I hava a quick question:
I see that you have the high-level charts in the version 0.11.0:
http://docs.bokeh.org/en/0.11.0/docs/user_guide/charts.html
But I can't find the same topic in the last version (1.0.3)? Did bokeh team remove it?
I have been working on adapting histograms to my project but can't find the histograms section in the last version?
Any ideas?
The bokeh.charts API was deprecated and scheduled to be removed in version 1.0 several years ago. However, even that schedule was also eventually accelerated, due to lack of interest and better alternatives. It has been completely gone from the project since late 2017.
For very high level APIs on top of Bokeh, consider Chartify or Holoviews. Or just create histograms directly with the stable bokeh.plotting API. e.g.
from bokeh.plotting import figure, output_file, show
from bokeh.sampledata.autompg import autompg as df
from numpy import histogram
p = figure(plot_height=300)
hist, edges = histogram(df.hp, density=True, bins=20)
p.quad(top=hist, bottom=0, left=edges[:-1], right=edges[1:], line_color="white")
show(p)
Related
I am trying profiling my code in GPflow 2 as I need to know which part of my code consumes the most CPU time. In GPflow 1 there was a gpflowrc file where you could set dump_timeline = True but this has changed in GPflow 2 (to the gpflow.config module) and I can't find a similar option in there.
Working with TensorFlow 2 is much simpler than TensorFlow 1, so with GPflow 2 we're relying a lot more on TensorFlow built-ins instead of adding extra code - GPflow 2 is "just another TensorFlow graph". So you should be able to directly use the TensorFlow profiler: see this blog post for an introduction and the guide in the TensorFlow documentation for more details.
(According to https://github.com/tensorflow/tensorboard/issues/2874, TensorBoard's "Trace Viewer" for the timeline should now work fine in Firefox, but if you encounter any issues on the visualization side it's worth trying out Chrome.)
import pyLDAvis.gensim
# Visualize the topics
pyLDAvis.enable_notebook()
vis = pyLDAvis.gensim.prepare(lda_model, corpus, id2word)
vis
The above code displayed the visualization of LDA model in google colab but then after reopening the notebook it stopped displaying.
I even tried
pyLDAvis.display(vis, template_type='notebook')
still not working
When I set
pyLDAvis.enable_notebook(local=True)
it does display the result but not the labels.. Any help would be appreciated!!
when you install LDAvis make sure to specify the version to be 2.1.2 with:
!pip install pyLDAvis==2.1.2
the new versions don't seem to play well with colab.
they changed the package name. use it like:
import pyLDAvis.gensim_models
vis = pyLDAvis.gensim_models.prepare(lda_model, corpus, id2word)
vis
I want to make a network graph which shows the distribution of our documents in our folder structure.
I have the nodefile, edgefile and gephi graph file in this location:
https://1drv.ms/f/s!AuVfRBdVHkO7hgs5K9r9f7jBBAUH
What I do is:
Run the algorithm ForceAtlas2 with scaling 10-20, dissuade hub marked and prevent overlap marked, all other standard setting.
What I get is a graph with groups radial/spherical distributed. However, what I want is a tree directed network graph.
Anyone know how I can adjust Gephi to make this?
Thanks!
I just found a solution.
I tested the file format as shown on the Yed site "import excel file" page
http://yed.yworks.com/support/manual/import_excel.html
This gave me the Yed import dialog (took a life time to figure out that it's a pop up menu and not selectable through the standard menu)
Anyway, it worked and I've adjusted the test files with the data prepared for the Gehpi. This was pretty easy, I could used the source target ID's etc. Just copy paste.
I load it into Yed and used some directed and radial clustering algorithms on it. Works fine!
Below you can find the excel node/edge file used to import in Yed and the graph file you can open with Yed to see the final radial result.
https://1drv.ms/f/s!AuVfRBdVHkO7hg6DExK_eVkm5_mR
Only thing to figure out is how to combine the weight (which represents the number of documents) with the node size.
Unfortunately, as of version 0.9.0, Gephi no longer supports hierarchical graphs. Maybe try using a previous version?
Other alternatives involve more complex software, such as Graphviz, but you need a .dot file instead of your .csv. I looked all over, but could not find an easy-to-use csv to dot converter.
You could try looking at d3-hierarchy, a node.js program, but then again you need to use the not-so-user-friendly npm. If you look at the link, it looks like it can produce the kind of diagram you're looking for.
Is it possible to include LaTeX-style math in any way with github repo wikis? Googling implies github no longer allows things like MathJax, but most references are years old. What (if any) alternatives are there to including LaTeX-formatted math in github wikis?
You can use chart.apis.google.com to render LaTeX formulas as PNG.
It work nicely with Githhub's markdown:
Example (Markdown):
The ratio of the momentum to the velocity is
the relativistic mass, m.
![f1]
And the relativistic mass and the relativistic
kinetic energy are related by the formula:
![f2]
Einstein wanted to omit the unnatural second term
on the right-hand side, whose only purpose is
to make the energy at rest zero, and to declare
that the particle has a total energy, which obeys:
![f3] which is a sum of the rest energy ![f4]
and the kinetic energy.
[f1]: http://chart.apis.google.com/chart?cht=tx&chl=m=\frac{m_0}{\sqrt{1-{\frac{v^2}{c^2}}}}
[f2]: http://chart.apis.google.com/chart?cht=tx&chl=E_k=mc^2-m_0c^2
[f3]: http://chart.apis.google.com/chart?cht=tx&chl=E=mc^2
[f4]: http://chart.apis.google.com/chart?cht=tx&chl=m_0c^2
https
Some installations of Github Enterprise reject http and work only if you use https
Rendered:
For simple formulas (such as exponents etc) you may one just to use the available render languages. For example, using Textile, you can do:
_E = mc ^2^_
Thiw will be rendered as:
_ is used for italic style and ^ for superscript.
You can do the same thing in Markdown adding some HTML:
*E = mc<sup>2</sup>*
You can see it in action in this very place:
E = mc2
If you're looking for support for complex math formulas, then you have no better option than using a third-party service generating images for you. mathUrl looks interesting.
As input we give it E = mc ^ 2 and it generates the following link:
http://mathurl.com/render.cgi?E%20%3D%20mc%20%5E%202%5Cnocache
There is good solution for your problem - use TeXify github plugin - more details about this plugin and explanation why this is good approach you can find in that answer.
GitLab Wiki and markdown supports formulas. I moved multiple repos for this reason.
Now GitHub officially supports showing Mathjax in the wiki!
In Markdown, just use $ as the deliminator of inline formulas, and $$ as the deliminator of display formulas.
To add math equations to a GitHub wiki, I used mathURL as suggested by Ionică. It will render your LaTeX equations. Append .png to the generated url and use that url as an image (either block or inline) in your markdown.
So I need a few simple pointers with the BIRT chart API.
I am trying to draw a simple line chart of a numeric value over time. I have a vector of (Date,Double) pairs as input. I have read through the examples in org.eclipse.birt.chart.examples but not yet gained enough traction with the API to start making use of it. Just composing a org.eclipse.birt.chart.model.impl.ChartWithAxesImpl has me stumped.
The eventual destination is an Eclipse editor, and that I can do. Is there a tutorial or book anyone can recommend that might get me going with the BIRT chart side?
I should be very grateful
M.
Well. There is this example: http://www.eclipse.org/articles/article.php?file=Article-BIRTChartEngine/index.html
But I am having some problems actually getting it to work myself. All I end up with is an exception like this:
java.lang.NullPointerException
at org.eclipse.birt.chart.device.swt.SwtTextMetrics.getHeight(SwtTextMetrics.java:178)
at org.eclipse.birt.chart.computation.Methods.computeFontHeight(Methods.java:1272)
at org.eclipse.birt.chart.computation.BIRTChartComputation.computeFontHeight(BIRTChartComputation.java:30)
at org.eclipse.birt.chart.computation.EllipsisHelper$SimpleTester.<init>(EllipsisHelper.java:213)
at org.eclipse.birt.chart.computation.EllipsisHelper.createSimpleTester(EllipsisHelper.java:176)
at org.eclipse.birt.chart.computation.EllipsisHelper.simpleInstance(EllipsisHelper.java:183)
at org.eclipse.birt.chart.computation.LabelLimiter.limitLabelSize(LabelLimiter.java:256)
at org.eclipse.birt.chart.computation.LabelLimiter.limitLabelSize(LabelLimiter.java:211)
at org.eclipse.birt.chart.model.layout.impl.TitleBlockImpl.computeBox(TitleBlockImpl.java:288)
at org.eclipse.birt.chart.model.layout.impl.LabelBlockImpl.getPreferredSize(LabelBlockImpl.java:266)
at org.eclipse.birt.chart.internal.layout.LayoutManager$ChartLayout.<init>(LayoutManager.java:111)
at org.eclipse.birt.chart.internal.layout.LayoutManager.doLayout_tmp(LayoutManager.java:1145)
at org.eclipse.birt.chart.internal.layout.LayoutManager.doLayout(LayoutManager.java:1310)
at org.eclipse.birt.chart.factory.Generator.build(Generator.java:1092)
I had the same trouble with the examples from org.eclipse.birt.chart.examples. There are some good java code snippets, but you do not see to what they correspond. This is why I decided to generate all the examples and put them on a web site: BIRT Charts Gallery.