I'm trying to upgrade a system from Postgresql 9.6 to Postgresql 13 using pg_upgrade shipped with Postgresql 13. This upgrade fails with the error:
Your installation references loadable libraries that are missing from the new installation. You
can add these libraries to the new installation,
or remove the functions using them from the old installation. A list of
problem libraries is in the file:
loadable_libraries.txt
Failure, exiting
-bash-4.2$ cat loadable_libraries.txt
could not load library "$libdir/plpython2": ERROR: could not access file "$libdir/plpython2": No such file or directory
In database: infohub
This error seems clear to me, the infohub database uses the plpython2 extension, which isn't installed (and doesn't even exist) for postgresql 13.
My problem is that I've tried removing the extension and pg_upgrade still fails with the above error.
postgres=# \c infohub
psql (13.0, server 9.6.19)
You are now connected to database "infohub" as user "postgres".
infohub=# DROP EXTENSION plpythonu CASCADE ;
DROP EXTENSION
I tried using this statement to check if there are any function
infohub=# select DISTINCT l.lanname as function_language
from pg_proc p
left join pg_language l on p.prolang = l.oid
;
function_language
-------------------
internal
sql
c
plpgsql
(4 rows)
Best I can tell, there are no functions that depend on plpythonu (or plpython2), however pg_upgrade still gives me the above error about a missing extension.
Any help or idea would be greatly appreciated.
Run the following statement in all databases:
SELECT oid::regprocedure
FROM pg_catalog.pg_proc
WHERE probin = '$libdir/plpython2';
Then you know which functions are at fault and can remove them.
I’m trying to CREATE TABLE command in Postgresql.
After creating a table, if I punch in TABLE table name, it works.
But I punch in \d table name, I keep getting an error below.
ERROR: column c.relhasoids does not exist
LINE 1: ...riggers, c.relrowsecurity, c.relforcerowsecurity, c.relhasoi...
I attempted DROP DATABASE table name recreated a database and recreated a table again several times. But it didn't work.
Any suggestions would be appreciated! Thank you.
I am able to reproduce your error if I am using Postgres v.12 and an older client (v.11 or earlier):
[root#def /]# psql -h 172.17.0.3
psql (11.5, server 12.0)
WARNING: psql major version 11, server major version 12.
Some psql features might not work.
Type "help" for help.
postgres=# create table mytable (id int, name text);
CREATE TABLE
postgres=# table mytable;
id | name
----+------
(0 rows)
postgres=# \d mytable;
ERROR: column c.relhasoids does not exist
LINE 1: ...riggers, c.relrowsecurity, c.relforcerowsecurity, c.relhasoi...
^
postgres=#
This is because in v. 12, table OIDs are no longer treated as special columns, and hence the relhasoids column is no longer necessary. Please make sure you're using a v. 12 psql binary so you don't encounter this error.
You may not necessarily be using psql, so the more general answer here is to make sure you’re using a compatible client.
For anyone running Postgres as a Docker container:
Instead of running psql from the host, run it from inside the container e.g.
docker exec -it postgres_container_name psql your_connection_string
The Postgres image always ships with the corresponding—and thus always updated—version of psql so you don't have to worry about having the correct version installed on the host machine.
If you're using DataGrip, there's an easy fix:
Try using "Introspect using JDBC metadata". This fixed it for me when (I think) I had a version mismatch between postgresql server and DataGrip client.
Under your connection settings -> Options tab -> check Introspect using JDBC metadata
According to https://www.jetbrains.com/help/datagrip/data-sources-and-drivers-dialog.html#optionsTab :
Switch to the JDBC-based introspector.
To retrieve information about database objects (DB metadata), DataGrip
uses the following introspectors:
A native introspector (might be unavailable for certain DBMS). The
native introspector uses DBMS-specific tables and views as a source of
metadata. It can retrieve DBMS-specific details and produce a more
precise picture of database objects.
A JDBC-based introspector (available for all the DBMS). The JDBC-based
introspector uses the metadata provided by the JDBC driver. It can
retrieve only standard information about database objects and their
properties.
Consider using the JDBC-based intorspector when the native
introspector fails or is not available.
The native introspector can fail, when your database server version is
older than the minimum version supported by DataGrip.
You can try to switch to the JDBC-based introspector to fix problems
with retrieving the database structure information from your database.
For example, when the schemas that exist in your database or database
objects below the schema level are not shown in the Database tool
window.
The issue is the client (psql) is a different version from the postgres server. I have seen this issue with psql version 11 talking to postgres version 12. To solve this issue upgrade the psql version to 12.
If you are running a docker postgres, you can exec into the container then use the psql client installed there.
# get the container id with this
docker ps
# Then exec into the container, please note the host will now be 120.0.0.1
docker exec -it c12e8c6b8eb5 /bin/bash
I had this issue because my psql was 9.2 and the server version was 12.7.
So ... clearly the psql client needs to be updated. But how?
Before you go downloading/installing anything though you may already have the right version. In my case I did.
I executed which psql which showed my version was coming from /usr/bin/psql.
I then checked /usr/pgsql-12/bin and found there was a psql in there.
So all I needed to do was ensure psql was picked up from there.
There are a number of places that could be controlling this; in my case I just added this line to my .pgsql_profile (in the postgres user's home directory):
export PATH="/usr/pgsql-12/bin:$PATH"
Logging out and back in as postgres and executing which psql showed the change had been successful:
which psql
/usr/pgsql-12/bin/psql
This answer is specific to pgcli
If you are using pgcli you may be encountering this issue. It's solved by updating the python package pgspecial.
If you installed pgcli using pip, you can simply do, depending on your python version:
pip install -U pgspecial
or
pip3 install -U pgspecial
If you are using Ubuntu and intalled pgcli using apt, you can either switch it to pip with:
sudo apt remove --purge pgcli
pip3 install pgcli
or update the distribution package python-pgspecial or python3-pgspecial from the Ubuntu packages web site. In that case you may need to update its dependencies as well.
I had this issue today, was unable to continue work due to this, strangely the application code is working fine.
Later, found this issue is only occurring if I use OmniDb client I use to connect to DB.
I have switched client to default pgAdmin 4 that comes with postgres installation & issue is not occurring anymore pgAdmin 4. Link: https://www.pgadmin.org/download/pgadmin-4-windows/
Its possible that OmniDb client might be older, but no time to troubleshoot it, using pgAdmin 4 for now.
Hope that helps.
Just update DataGrip solved this issue, Datagrip updated to version DataGrip 2019.3.3, Build #DB-193.6494.42, built on February 12, 2020, Now working :)
Just for DataGrip users!
I had the same issue today too. In my case, the problem was solved when I deleted the version 12 and installed the version 11. Seems that v12 has some features that must be create along the others columns.
I had the same problem.
But I found the solution by downloading the latest build on 14/10/2019
Follow the link:
https://postbird.paxa.kuber.host/2019_10_14.06_42-master-7a9e949
I hope it helps
To fix this, edit Postgres.php file and comment the lines from hasObjectID function as shown below.
function hasObjectID($table) {
$c_schema = $this->_schema;
$this->clean($c_schema);
$this->clean($table);
/*
$sql = "SELECT relhasoids FROM pg_catalog.pg_class WHERE relname='{$table}'
AND relnamespace = (SELECT oid FROM pg_catalog.pg_namespace WHERE nspname='{$c_schema}')";
$rs = $this->selectSet($sql);
if ($rs->recordCount() != 1) return null;
else {
$rs->fields['relhasoids'] = $this->phpBool($rs->fields['relhasoids']);
return $rs->fields['relhasoids'];
}
*/
}
I had the same issue when using PgAdmin to query the database.
Once I installed the newest version of PgAdmin the error disappeared!
You might also try restarting pgadmin.
After upgrading from postgres96 to postgres12 I had the same issue. My pgadmin was running psql v12.0 so that wasn't the issue. I restarted pgadmin for a separate issue and the relhasoids issue went away.
If anyone could explain to me why this worked that would be appreciated.
Just use version 11.
how to install version 11
https://websiteforstudents.com/how-to-install-postgresql-11-on-ubuntu-16-04-18-04-servers/
I also got same issue with my postgresql tables. I have fixed this issue by below query.
ALTER Table MyDataBase.table_name add column column_name data_type default 0 not null;
commit;
I am unable to complete Moodle installation. I am hosting the site on NearlyFreeSpeech and using PHP 5.6. Moodle doesnt seem to be able to connect to the database and write any tables.
I created the moodledata folder in /protected/moodledata and moodle is in /public/moodle
I receive this error after accepting the terms and conditions.
Error reading from database
More information about this error
It is usually not possible to recover from errors triggered during installation, you may need to create a new database or use a different database prefix if you want to retry the installation.
Normally my first instinct would point to the config.php file but if it's getting as far as telling you that a connection is established with the database but there's a read error ("Error reading from database"), then that generally means your config.php file is probably healthy, but your database is not.
Firstly, check that you're using one of the following database servers that Moodle is compatible with (minimum version)
PostgreSQL 9.1
MySQL 5.5.31
MariaDB 5.5.31
Microsoft SQL Server 2008
Oracle Database 10.2
source.
Secondly, ensure that the user assigned to access your database in config.php has ALL PRIVILEGES set on that database.
Moving on... If this is a fresh install and you have no data to lose, your best bet is to start with a clean database.
You can either delete your existing database and set up a new one, or you can drop all tables from your existing database.
Option 1. Delete your existing database.
Delete your config.php file
Jump to phpMyAdmin (from the 'actions' tab on the MySQL process page)
Click on "Databases"
Delete your existing database
Hit "Create database" to generate a fresh, empty database
Go to http://your.url/install.php and follow the instructions for a fresh install.
Option 2. Clear your existing database
Jump to phpMyAdmin and run the following query:
DECLARE #sql NVARCHAR(max)=''
SELECT #sql += ' Drop table '+TABLE_SCHEMA+'.'+ TABLE_NAME
FROM INFORMATION_SCHEMA.TABLES
WHERE TABLE_TYPE = 'BASE TABLE'
Exec Sp_executesql #sql
source.
Then go to http://your.url/install.php and follow the instructions for a fresh install.
If you managed to start with a fresh database and you get the same error, please ensure that you have all the prerequisites available from your host. You can find a list of Moodle PHP requirements here.
The only time I've seen that error is when using the wrong MySQL version. Eg currently MySQL 5.5 is supported but if you have 5.1 you would get that error.
Source: http://realtechtalk.com/moodle_install_error_Error_reading_from_database_-2072-articles
I am following this tutorial
http://technobytz.com/install-postgis-postgresql-9-3-ubuntu.html
and i created db with this command
createdb test_db -T template_postgis2.1
but i get this error
test_db2=# select postgis_version();
ERROR: function postgis_version() does not exist
LINE 1: select postgis_version();
This works if use
create extension postgis
i want to know that is that ok or i have error. because i made the template before. Didn't that template automatically make the db as postgis
According to the official documentation on the topic, you have to create the extension in each new database you create. Why? This has to do with a change in the way a database is PostGIS-enabled in PostgreSQL-9.1+ and PostGIS-2+. Previously, there were a series of scripts that had to be run to load the functions, types, and other features of PostGIS into a database. Consequently, the best practice was to create a template database (template_postgis, etc.), run all the scripts against that template, and create each new PostGIS-enabled database against that template. In newer versions of PostgreSQL (9.1+), you can enabled PostGIS support within a new database by simply executing the command CREATE EXTENSION postgis; as such, you should skip the template step entirely.
So to sum up:
CREATE EXTENSION postgis; is the way to go for PostgreSQL-9.1+ and PostGIS-2+
Making a template database is the way to go for prior versions of PostgreSQL or PostGIS.
I hope that helps clear it up!
I am using pgProvider on a MVC3 Mono application and had no issues on Windows Postgres 9.2. I am migrating to my production Linux/Mono environment, and received an error when attempting to access the provider:
"42704: language "plpgsql" does not exist"
I am using postgreSQL 8.4 on CentOS 6.3
I looked at some info, and ran the following:
createlang -d dbname plpgsql
When I run it again, it affirms that the database is already there.
I restarted postgresql and my app. However, I still get the above error.
Does anyone have any info on why I would still receive an "plpgsql does not exist -- after it is installed?"
In general this sort of error is an indication that something is not as you expect and you need to challenge your assumptions.
Please note that languages do not require restarting the database server to take effect on any version of PostgreSQL. Also note that what languages are allowed in PostgreSQL is a per-db catalog entry (languages, unlike users and roles, are not cluster-global).
So in troubleshooting this, you need to start with:
Is this the right db? The right server?
Is my application connecting to the same db/server I think it is?
Given that createlang affirms that the language exists after you run it, this can't be an issue with PostgreSQL raising a phony error. Instead it must be a problem with the changes you made not affecting the database your application is using.