// 4 workers
val sc = new SparkContext("local[4]", "naivebayes")
// Load documents (one per line).
val documents: RDD[Seq[String]] = sc.textFile("/tmp/test.txt").map(_.split(" ").toSeq)
documents.zipWithIndex.foreach{
case (e, i) =>
val collectedResult = Tokenizer.tokenize(e.mkString)
}
val hashingTF = new HashingTF()
//pass collectedResult instead of document
val tf: RDD[Vector] = hashingTF.transform(documents)
tf.cache()
val idf = new IDF().fit(tf)
val tfidf: RDD[Vector] = idf.transform(tf)
in the above code snippet, i would want to extract collectedResult to reuse it for hashingTF.transform, How can this be achieved where the signature of tokenize function is
def tokenize(content: String): Seq[String] = {
...
}
Looks like you want map rather than foreach. I don't understand what you're using zipWithIndex for, nor why you're calling split on your lines only to join them straight back up again with mkString.
val lines: Rdd[String] = sc.textFile("/tmp/test.txt")
val tokenizedLines = lines.map(tokenize)
val hashes = tokenizedLines.map(hashingTF)
hashes.cache()
...
Related
I came across the following example from the book "Fast Processing with Spark" by Holden Karau. I did not understand what the following line of code does in the program:
val splitLines = inFile.map(line => {
val reader = new CSVReader(new StringReader(line))
reader.readNext()
})
val numericData = splitLines.map(line => line.map(_.toDouble))
val summedData = numericData.map(row => row.sum)
The program is :
package pandaspark.examples
import spark.SparkContext
import spark.SparkContext._
import spark.SparkFiles;
import au.com.bytecode.opencsv.CSVReader
import java.io.StringReader
object LoadCsvExample {
def main(args: Array[String]) {
if (args.length != 2) {
System.err.println("Usage: LoadCsvExample <master>
<inputfile>")
System.exit(1)
}
val master = args(0)
val inputFile = args(1)
val sc = new SparkContext(master, "Load CSV Example",
System.getenv("SPARK_HOME"),
Seq(System.getenv("JARS")))
sc.addFile(inputFile)
val inFile = sc.textFile(inputFile)
val splitLines = inFile.map(line => {
val reader = new CSVReader(new StringReader(line))
reader.readNext()
})
val numericData = splitLines.map(line => line.map(_.toDouble))
val summedData = numericData.map(row => row.sum)
println(summedData.collect().mkString(","))
}
}
I briefly know the functionality of the above program. It parses the input
CSV and sums all the rows. But how exactly those 3 lines of code work to achieve is what I am unable to understand.
Also could anyone explain how the output would change if those lines are replaced with flatMap? Like:
val splitLines = inFile.flatMap(line => {
val reader = new CSVReader(new StringReader(line))
reader.readNext()
})
val numericData = splitLines.flatMap(line => line.map(_.toDouble))
val summedData = numericData.map(row => row.sum)
val splitLines = inFile.map(line => {
val reader = new CSVReader(new StringReader(line))
reader.readNext()
})
val numericData = splitLines.map(line => line.map(_.toDouble))
val summedData = numericData.map(row => row.sum)
so in this code is basically reading a CSV file data and adding it's value.
suppose your CSV file is something like -
10,12,13
1,2,3,4
1,2
so here inFile we are fetching a data from CSV file like -
val inFile = sc.textFile("your CSV file path")
so Here inFile is an RDD Which has text formatted data.
and when you apply collect on it then it will look like this -
Array[String] = Array(10,12,13 , 1,2,3,4 , 1,2)
and when you apply map over it then you will find -
line = 10,12,13
line = 1,2,3,4
line = 1,2
and for reading this data in CSV format it is using -
val reader = new CSVReader(new StringReader(line))
reader.readNext()
so after reading data in CSV format, splitLines look like -
Array(
Array(10,12,13),
Array(1,2,3,4),
Array(1,2)
)
on splitLines, it's applying
splitLines.map(line => line.map(_.toDouble))
here in line you will get Array(10,12,13) and after it, it's using
line.map(_.toDouble)
so it's changing all elements type from string to Double.
so in numericData you will get same
Array(Array(10.0, 12.0, 13.0), Array(1.0, 2.0, 3.0, 4.0), Array(1.0, 2.0))
but all elements now in form of Double
and it's applying the sum of the individual row or array so answer something like -
Array(35.0, 10.0, 3.0)
you will get it when you will apply susummedData.collect()
First of all there is no any flatMap operation in your code sample, so title is misleading. But in general map called on collection returns new collection with function applied to each element of collection.
Going line by line through your code snippet:
val splitLines = inFile.map(line => {
val reader = new CSVReader(new StringReader(line))
reader.readNext()
})
Type of inFile is RDD[String]. You take every such string, create csv reader out of it and call readNext (which returns array of strings). So at the end you will get RDD[String[]].
val numericData = splitLines.map(line => line.map(_.toDouble))
A bit more tricky line with 2 maps operations nested. Again, you take each element of RDD collection (which is now String[]) and apply _.toDouble function to every element of String[]. At the end you will get RDD[Double[]].
val summedData = numericData.map(row => row.sum)
You take elements of RDD and apply sum function to them. Since every element is Double[], sum will produce single Double value. At the end you will get RDD[Double].
I'm trying out my first Scala program to sort the following output such that when the value is identical, words are sorted alphabetically.
cookie 8
document 6
function 5
name 5
start 5
My current code is as follows:
object Problem1{
def main(args: Array[String]){
val inputFile = args(0)
val outputFolder = args(1)
val kValue = args(2)
val conf = new SparkConf().setAppName("Problem1").setMaster("local")
val sc = new SparkContext(conf)
val input = sc.textFile(inputFile)
val words = input.flatMap(line => line.toLowerCase().split( [\\s*&#^'''\\,..:;?!\\[\\](){}<>~\\-_]+"))
.filter(x => x.matches("[A-Za-z]+")&& x.length >2)
.map(word => (word,1)).reduceByKey(_+_).map(_.swap)
val freq = words.sortByKey(false,1).map(_.swap).take(kValue.toInt)
val topKrdd = sc.parallelize(freq)
val tabSeperated = topKrdd.map(f => f._1 +"\t" + f._2)
tabSeperated.saveAsTextFile(outputFolder)
}
}
Can someone help me with the alphabetical sort for the lines where the numerical value is identical?
Usually Scala provides and uses an implicit Ordering for methods like sortByKey, but you can also construct a custom one and pass it in explicitly. The Ordering trait and companion object have a fair few helpful methods for this. You could do this:
val ord = Ordering.Tuple2(Ordering[Int].reverse, Ordering[String])
val freq = words.takeOrdered(kValue.toInt)(ord).map(_.swap)
I'm making some code with scala & spark and want to make CSV file from RDD or LIST[Row].
I wanted to process 'ListRDD' data parellel so I thouth output data would be more than one file.
val conf = new SparkConf().setAppName("Csv Application").setMaster("local[2]")
val sc = new SparkContext(conf)
val sqlContext = new SQLContext(sc)
val logFile = "data.csv "
val rawdf = sqlContext.read.format("com.databricks.spark.csv")....
val rowRDD = rawdf.map { row =>
Row(
row.getAs( myMap.ID).toString,
row.getAs( myMap.Dept)
.....
)
}
val df = sqlContext.createDataFrame(rowRDD, mySchema)
val MapRDD = df.map { x => (x.getAs[String](myMap.ID), List(x)) }
val ListRDD = MapRDD.reduceByKey { (a: List[Row], b: List[Row]) => List(a, b).flatten }
myClass.myFunction( ListRDD)
in myClass..
def myFunction(ListRDD: RDD[(String, List[Row])]) = {
var rows: RDD[Row]
ListRDD.foreach( row => {
rows.add? gather? ( make(row._2)) // make( row._2) will return List[Row]
})
rows.saveAsFile(" path") // it's my final goal
}
def make( list: List[Row]) : List[Row] = {
data processing from List[Row]
}
I tried to make RDD data from List by sc.parallelize( list) BUT somehow nothing works. anyidea to make RDD type data from make function.
If you want to make an RDD from a List[Row], here is a way to do so
//Assuming list is your List[Row]
val newRDD: RDD[Object] = sc.makeRDD(list.toArray());
I have an RDD[String], wordRDD. I also have a function that creates an RDD[String] from a string/word. I would like to create a new RDD for each string in wordRDD. Here are my attempts:
1) Failed because Spark does not support nested RDDs:
var newRDD = wordRDD.map( word => {
// execute myFunction()
(new MyClass(word)).myFunction()
})
2) Failed (possibly due to scope issue?):
var newRDD = sc.parallelize(new Array[String](0))
val wordArray = wordRDD.collect
for (w <- wordArray){
newRDD = sc.union(newRDD,(new MyClass(w)).myFunction())
}
My ideal result would look like:
// input RDD (wordRDD)
wordRDD: org.apache.spark.rdd.RDD[String] = ('apple','banana','orange'...)
// myFunction behavior
new MyClass('apple').myFunction(): RDD[String] = ('pple','aple'...'appl')
// after executing myFunction() on each word in wordRDD:
newRDD: RDD[String] = ('pple','aple',...,'anana','bnana','baana',...)
I found a relevant question here: Spark when union a lot of RDD throws stack overflow error, but it didn't address my issue.
Use flatMap to get RDD[String] as you desire.
var allWords = wordRDD.flatMap { word =>
(new MyClass(word)).myFunction().collect()
}
You cannot create a RDD from within another RDD.
However, it is possible to rewrite your function myFunction: String => RDD[String], which generates all words from the input where one letter is removed, into another function modifiedFunction: String => Seq[String] such that it can be used from within an RDD. That way, it will also be executed in parallel on your cluster. Having the modifiedFunction you can obtain the final RDD with all words by simply calling wordRDD.flatMap(modifiedFunction).
The crucial point is to use flatMap (to map and flatten the transformations):
def main(args: Array[String]) {
val sparkConf = new SparkConf().setAppName("Test").setMaster("local[*]")
val sc = new SparkContext(sparkConf)
val input = sc.parallelize(Seq("apple", "ananas", "banana"))
// RDD("pple", "aple", ..., "nanas", ..., "anana", "bnana", ...)
val result = input.flatMap(modifiedFunction)
}
def modifiedFunction(word: String): Seq[String] = {
word.indices map {
index => word.substring(0, index) + word.substring(index+1)
}
}
I have two strings of RDF Turtle data
val a: String = "<http://www.test.com/meta#0001> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class>"
val b: String = "<http://www.test.com/meta#0002> <http://www.test.com/meta#CONCEPT_hasType> \"BEAR\"^^<http://www.w3.org/2001/XMLSchema#string>"
Each line has 3 items in it. I want to run one line through an RDF parse and get:
val items : Array[String] = magicallyParse(a)
items(0) == "http://www.test.com/meta#0001"
Bonus if I can also extract the Local items from each parsed items
0001, type, Class
0002, CONCEPT_hasType, (BEAR, string)
Is there a library out there (java or scala) that would do this split for me? I have looked at Jena and OpenRDF but could not find a way to do this single-line split up.
Thanks to #AndyS 's suggestion I came out with this for triples
val line1: String = "<http://www.test.com/meta#0001> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Class> ."
val reader: Reader = new StringReader(line1) ;
val tokenizer = TokenizerFactory.makeTokenizer(reader)
val graph: Graph = GraphFactory.createDefaultGraph()
val sink: StreamRDF = StreamRDFLib.graph(graph)
val turtle: LangTurtle = new LangTurtle(tokenizer, new ParserProfileBase(new Prologue(), null), sink)
turtle.parse()
println("item is this: " + graph)
println(graph.size())
println(graph.find(null, null, null).next())
val trip = graph.find(null, null, null).next()
val sub = trip.getSubject
val pred = trip.getPredicate
val obj = trip.getObject
println(s"subject[$sub] predicate[$pred] object[$obj]")
val subLoc = sub.getLocalName
val predLoc = pred.getLocalName
val objLoc = obj.getLocalName
println(s"subject[$subLoc] predicate[$predLoc] object[$objLoc]")
and then for quads I referenced this code to get this
def extractRdfLineAsQuad(line: String): Option[Quad] = {
val reader: Reader = new StringReader(line)
val tokenizer = TokenizerFactory.makeTokenizer(reader)
val parser: LangNQuads = new LangNQuads(tokenizer, RiotLib.profile(Lang.NQUADS, null), null)
if (parser.hasNext) Some(parser.next())
else None
}
Far from pretty, it does what I require.