I have a list of HBase row keys in form or Array[Row] and want to create a Spark DataFrame out of the rows that are fetched from HBase using these RowKeys.
Am thinking of something like:
def getDataFrameFromList(spark: SparkSession, rList : Array[Row]): DataFrame = {
val conf = HBaseConfiguration.create()
val mlRows : List[RDD[String]] = new ArrayList[RDD[String]]
conf.set("hbase.zookeeper.quorum", "dev.server")
conf.set("hbase.zookeeper.property.clientPort", "2181")
conf.set("zookeeper.znode.parent","/hbase-unsecure")
conf.set(TableInputFormat.INPUT_TABLE, "hbase_tbl1")
rList.foreach( r => {
var rStr = r.toString()
conf.set(TableInputFormat.SCAN_ROW_START, rStr)
conf.set(TableInputFormat.SCAN_ROW_STOP, rStr + "_")
// read one row
val recsRdd = readHBaseRdd(spark, conf)
mlRows.append(recsRdd)
})
// This works, but it is only one row
//val resourcesDf = spark.read.json(recsRdd)
var resourcesDf = <Code here to convert List[RDD[String]] to DataFrame>
//resourcesDf
spark.emptyDataFrame
}
I can do recsRdd.collect() in the for loop and convert it to string and append that json to an ArrayList[String but am not sure if its efficient, to call collect() in a for loop like this.
readHBaseRdd is using newAPIHadoopRDD to get data from HBase
def readHBaseRdd(spark: SparkSession, conf: Configuration) = {
val hBaseRDD = spark.sparkContext.newAPIHadoopRDD(conf, classOf[TableInputFormat],
classOf[ImmutableBytesWritable],
classOf[Result])
hBaseRDD.map {
case (_: ImmutableBytesWritable, value: Result) =>
Bytes.toString(value.getValue(Bytes.toBytes("cf"),
Bytes.toBytes("jsonCol")))
}
}
}
Use spark.union([mainRdd, recsRdd]) instead of a list or RDDs (mlRows)
And why read only one row from HBase? Try to have the largest interval as possible.
Always avoid calling collect(), do it only for debug/tests.
Well I am new to spark and scala and have been trying to implement cleaning of data in spark. below code checks for the missing value for one column and stores it in outputrdd and runs loops for calculating missing value. code works well when there is only one missing value in file. Since hdfs does not allow writing again on the same location it fails if there are more than one missing value. can you please assist in writing finalrdd to particular location once calculating missing values for all occurrences is done.
def main(args: Array[String]) {
val conf = new SparkConf().setAppName("app").setMaster("local")
val sc = new SparkContext(conf)
val sqlContext = new org.apache.spark.sql.SQLContext(sc)
val files = sc.wholeTextFiles("/input/raw_files/")
val file = files.map { case (filename, content) => filename }
file.collect.foreach(filename => {
cleaningData(filename)
})
def cleaningData(file: String) = {
//headers has column headers of the files
var hdr = headers.toString()
var vl = hdr.split("\t")
sqlContext.clearCache()
if (hdr.contains("COLUMN_HEADER")) {
//Checks for missing values in dataframe and stores missing values' in outputrdd
if (!outputrdd.isEmpty()) {
logger.info("value is zero then performing further operation")
val outputdatetimedf = sqlContext.sql("select date,'/t',time from cpc where kwh = 0")
val outputdatetimerdd = outputdatetimedf.rdd
val strings = outputdatetimerdd.map(row => row.mkString).collect()
for (i <- strings) {
if (Coddition check) {
//Calculates missing value and stores in finalrdd
finalrdd.map { x => x.mkString("\t") }.saveAsTextFile("/output")
logger.info("file is written in file")
}
}
}
}
}
}``
It is not clear how (Coddition check) works in your example.
In any case function .saveAsTextFile("/output") should be called only once.
So I would rewrite your example into this:
val strings = outputdatetimerdd
.map(row => row.mkString)
.collect() // perhaps '.collect()' is redundant
val finalrdd = strings
.filter(str => Coddition check str) //don't know how this Coddition works
.map (x => x.mkString("\t"))
// this part is called only once but not in a loop
finalrdd.saveAsTextFile("/output")
logger.info("file is written in file")
I have two RDD's of the form:
data_wo_header: RDD[String], data_test_wo_header: RDD[String]
scala> data_wo_header.first
res2: String = 1,2,3.5,1112486027
scala> data_test_wo_header.first
res2: String = 1,2
RDD2 is smaller than RDD 1. I am trying to filter RDD1 by removing the elements whose regEx matches with RDD2.
The 1,2 in the above example represent UserID,MovID. Since it's present in the test I want the new RDD such that it's removed from RDD1.
I have asked a similar ques but it is requiring to do unnecessary split of RDD.
I am trying to do something of this sort but it's not working:
def create_training(data_wo_header: RDD[String], data_test_wo_header: RDD[String]): List[String] = {
var ratings_train = new ListBuffer[String]()
data_wo_header.foreach(x => {
data_test_wo_header.foreach(y => {
if (x.indexOf(y) == 0) {
ratings_train += x
}
})
})
val ratings_train_list = ratings_train.toList
return ratings_train_list
}
How should I do a regex match and filter based on it.
You can use broadcast variable to share state of rdd2 and then filter rdd1 based on broadcasted variable of rdd2. I replicate your code and this works for me
def create_training(data_wo_header: RDD[String], data_test_wo_header: RDD[String]): List[String] = {
val rdd2array = sparkSession.sparkContext.broadcast(data_test_wo_header.collect())
val training_set = data_wo_header.filter{
case(x) => rdd2array.value.filter(y => x.matches(y)).length == 0
}
training_set.collect().toList
}
Also with scala and spark I recommend you if it is possible to avoid foreach and use more functional paradigm with map,flatMap and filter functions
input.csv:
200,300,889,767,9908,7768,9090
300,400,223,4456,3214,6675,333
234,567,890
123,445,667,887
What I want:
Read input file and compare with set "123,200,300" if match found, gives matching data
200,300 (from 1 input line)
300 (from 2 input line)
123 (from 4 input line)
What I wrote:
import org.apache.spark.{SparkConf, SparkContext}
import org.apache.spark.rdd.RDD
object sparkApp {
val conf = new SparkConf()
.setMaster("local")
.setAppName("CountingSheep")
val sc = new SparkContext(conf)
def parseLine(invCol: String) : RDD[String] = {
println(s"INPUT, $invCol")
val inv_rdd = sc.parallelize(Seq(invCol.toString))
val bs_meta_rdd = sc.parallelize(Seq("123,200,300"))
return inv_rdd.intersection(bs_meta_rdd)
}
def main(args: Array[String]) {
val filePathName = "hdfs://xxx/tmp/input.csv"
val rawData = sc.textFile(filePathName)
val datad = rawData.map{r => parseLine(r)}
}
}
I get the following exception:
java.lang.NullPointerException
Please suggest where I went wrong
Problem is solved. This is very simple.
val pfile = sc.textFile("/FileStore/tables/6mjxi2uz1492576337920/input.csv")
case class pSchema(id: Int, pName: String)
val pDF = pfile.map(_.split("\t")).map(p => pSchema(p(0).toInt,p(1).trim())).toDF()
pDF.select("id","pName").show()
Define UDF
val findP = udf((id: Int,
pName: String
) => {
val ids = Array("123","200","300")
var idsFound : String = ""
for (id <- ids){
if (pName.contains(id)){
idsFound = idsFound + id + ","
}
}
if (idsFound.length() > 0) {
idsFound = idsFound.substring(0,idsFound.length -1)
}
idsFound
})
Use UDF in withCoulmn()
pDF.select("id","pName").withColumn("Found",findP($"id",$"pName")).show()
For simple answer, why we are making it so complex? In this case we don't require UDF.
This is your input data:
200,300,889,767,9908,7768,9090|AAA
300,400,223,4456,3214,6675,333|BBB
234,567,890|CCC
123,445,667,887|DDD
and you have to match it with 123,200,300
val matchSet = "123,200,300".split(",").toSet
val rawrdd = sc.textFile("D:\\input.txt")
rawrdd.map(_.split("|"))
.map(arr => arr(0).split(",").toSet.intersect(matchSet).mkString(",") + "|" + arr(1))
.foreach(println)
Your output:
300,200|AAA
300|BBB
|CCC
123|DDD
What you are trying to do can't be done the way you are doing it.
Spark does not support nested RDDs (see SPARK-5063).
Spark does not support nested RDDs or performing Spark actions inside of transformations; this usually leads to NullPointerExceptions (see SPARK-718 as one example). The confusing NPE is one of the most common sources of Spark questions on StackOverflow:
call of distinct and map together throws NPE in spark library
NullPointerException in Scala Spark, appears to be caused be collection type?
Graphx: I've got NullPointerException inside mapVertices
(those are just a sample of the ones that I've answered personally; there are many others).
I think we can detect these errors by adding logic to RDD to check whether sc is null (e.g. turn sc into a getter function); we can use this to add a better error message.
// 4 workers
val sc = new SparkContext("local[4]", "naivebayes")
// Load documents (one per line).
val documents: RDD[Seq[String]] = sc.textFile("/tmp/test.txt").map(_.split(" ").toSeq)
documents.zipWithIndex.foreach{
case (e, i) =>
val collectedResult = Tokenizer.tokenize(e.mkString)
}
val hashingTF = new HashingTF()
//pass collectedResult instead of document
val tf: RDD[Vector] = hashingTF.transform(documents)
tf.cache()
val idf = new IDF().fit(tf)
val tfidf: RDD[Vector] = idf.transform(tf)
in the above code snippet, i would want to extract collectedResult to reuse it for hashingTF.transform, How can this be achieved where the signature of tokenize function is
def tokenize(content: String): Seq[String] = {
...
}
Looks like you want map rather than foreach. I don't understand what you're using zipWithIndex for, nor why you're calling split on your lines only to join them straight back up again with mkString.
val lines: Rdd[String] = sc.textFile("/tmp/test.txt")
val tokenizedLines = lines.map(tokenize)
val hashes = tokenizedLines.map(hashingTF)
hashes.cache()
...