Currently I am working a project that has have been using the pathlib library so I can work on my Windows desktop when I need too and on my MacBook Pro. Essentially be able to work between both operating systems. I have not have any issues at all until right now. Here is the set up:
I have a pipeline set up to automatically save a .joblib and a whole lot of .png files that will go to a directory called
output_dir = Path('../Trained_Models/Differential_gene_analysis/A Kidney Cancer Transcriptome Molecular Signature Identifies Tumors with Tumor Thrombus/Models train on TCGA data and test on Rodriguez data/Oct-XX-20XX')
For example, if I want to save a .joblib file under the name RandomForest_TumorThrombus_104.joblib,I would use the command
joblib.dump(model ,output_dir / 'RandomForest_TumorThrombus_104.joblib')
On my MacBook Pro, I have no issues when this is ran, but on Windows it gives me the following error
FileNotFoundError: [Errno 2] No such file or directory: '..\\Trained_Models\\Differential_gene_analysis\\A Kidney Cancer Transcriptome Molecular Signature Identifies Tumors with Tumor Thrombus\\Models train on TCGA data and test on Rodriguez data\\Oct-17-2022\\RandomForest_TumorThrombus_104.joblib'
I have tried to use the .resolve() method to get the absolute path but still gives me the same error. I have tried to experiment to try to see what is goin on such as using os.path.exists(). When using the os.path.exists() method I get True for the follwoing command:
os.path.exists(output_dir)
So it does indeed recognize that the directory exists. The next thing I tried was to rename the file to something like dddddd.joblib and that worked. But I find that only a few names for the file would allow me to save the files. During debug I found that the most recent Traceback occurs here:
with open(filename, 'wb') as f:```
I was wondering if anyone here had any idea what was going on here and how I can fix this issue? Please and Thank you.
The solution was to enable long paths on Windows.
I tried to train the tesseract 4.1 using OCRD project but after training completed I copied the lang.traineddata but getting above error.
The tesseractWiki page is very confusing to understand asking to use combine_lang_model after making lstmf file. So Actually I have the lstmf file. I created these file by using tif/box pair.
Please help me for further step.
Related discussions：Failed to load any lstm-specific dictionaries for lang xxx
Suppose your training folder like this:
OCRD/makefile
OCRD/data/foo-ground-truth.
You could try as following steps:
Find the WORDLIST_FILE/NUMBERS_FILE/PUNC_FILE in the makefile, and change them to:
WORDLIST_FILE := data/$(MODEL_NAME).wordlist
NUMBERS_FILE := data/$(MODEL_NAME).numbers
PUNC_FILE := data/$(MODEL_NAME).punc
Suppose your base traineddata is eng.traineddata.
2.1 Download the .wordlist/.numbers/.punc files from the langdata_lstm.
2.2 Place them in OCRD/data
2.3 if the MODEL_NAME = foo, rename them as: foo.wordlist, foo.numbers, foo.punc
if you don't have the base traineddata, you could try this too. But if your base traineddata is afr, you should download the files from langdata_lstm/afr.
make training again
The cause of this error：
In OCRD, the default path of the above three files is $ (OUTPUT_DIR) = data / $ (MODEL_NAME), and all files in this path are automatically generated during the training process.
If the variable START_MODEL is not assigned, the makefile will not generate any related files under this path;
If the variable START_MODEL has been assigned, the foo.lstm-number-dawg、foo.lstm-punc-dawg、foo.lstm-word-dawg and so on will be produced in data / $ (MODEL_NAME). But they are not the right one. So there may be a bug in OCRD.
In the book "Embedded Linux Systems with the Yocto Project", Chapter 4 contains a sample called "HelloWorld - BitBake style". I encountered a bunch of problems trying to get the old example working against the "Sumo" release 2.5.
If you're like me, the first error you encountered following the book's instructions was that you copied across bitbake.conf and got:
ERROR: ParseError at /tmp/bbhello/conf/bitbake.conf:749: Could not include required file conf/abi_version.conf
And after copying over abi_version.conf as well, you kept finding more and more cross-connected files that needed to be moved, and then some relative-path errors after that... Is there a better way?
Here's a series of steps which can allow you to bitbake nano based on the book's instructions.
Unless otherwise specified, these samples and instructions are all based on the online copy of the book's code-samples. While convenient for copy-pasting, the online resource is not totally consistent with the printed copy, and contains at least one extra bug.
Initial workspace setup
This guide assumes that you're working with Yocto release 2.5 ("sumo"), installed into /tmp/poky, and that the build environment will go into /tmp/bbhello. If you don't the Poky tools+libraries already, the easiest way is to clone it with:
$ git clone -b sumo git://git.yoctoproject.org/poky.git /tmp/poky
Then you can initialize the workspace with:
$ source /tmp/poky/oe-init-build-env /tmp/bbhello/
If you start a new terminal window, you'll need to repeat the previous command which will get get your shell environment set up again, but it should not replace any of the files created inside the workspace from the first time.
Wiring up the defaults
The oe-init-build-env script should have just created these files for you:
bbhello/conf/local.conf
bbhello/conf/templateconf.cfg
bbhello/conf/bblayers.conf
Keep these, they supersede some of the book-instructions, meaning that you should not create or have the files:
bbhello/classes/base.bbclass
bbhello/conf/bitbake.conf
Similarly, do not overwrite bbhello/conf/bblayers.conf with the book's sample. Instead, edit it to add a single line pointing to your own meta-hello folder, ex:
BBLAYERS ?= " \
${TOPDIR}/meta-hello \
/tmp/poky/meta \
/tmp/poky/meta-poky \
/tmp/poky/meta-yocto-bsp \
"
Creating the layer and recipe
Go ahead and create the following files from the book-samples:
meta-hello/conf/layer.conf
meta-hello/recipes-editor/nano/nano.bb
We'll edit these files gradually as we hit errors.
Can't find recipe error
The error:
ERROR: BBFILE_PATTERN_hello not defined
It is caused by the book-website's bbhello/meta-hello/conf/layer.conf being internally inconsistent. It uses the collection-name "hello" but on the next two lines uses _test suffixes. Just change them to _hello to match:
# Set layer search pattern and priority
BBFILE_COLLECTIONS += "hello"
BBFILE_PATTERN_hello := "^${LAYERDIR}/"
BBFILE_PRIORITY_hello = "5"
Interestingly, this error is not present in the printed copy of the book.
No license error
The error:
ERROR: /tmp/bbhello/meta-hello/recipes-editor/nano/nano.bb: This recipe does not have the LICENSE field set (nano)
ERROR: Failed to parse recipe: /tmp/bbhello/meta-hello/recipes-editor/nano/nano.bb
Can be fixed by adding a license setting with one of the values that bitbake recognizes. In this case, add a line onto nano.bb of:
LICENSE="GPLv3"
Recipe parse error
ERROR: ExpansionError during parsing /tmp/bbhello/meta-hello/recipes-editor/nano/nano.bb
[...]
bb.data_smart.ExpansionError: Failure expanding variable PV_MAJOR, expression was ${#bb.data.getVar('PV',d,1).split('.')[0]} which triggered exception AttributeError: module 'bb.data' has no attribute 'getVar'
This is fixed by updating the special python commands being used in the recipe, because #bb.data was deprecated and is now removed. Instead, replace it with #d, ex:
PV_MAJOR = "${#d.getVar('PV',d,1).split('.')[0]}"
PV_MINOR = "${#d.getVar('PV',d,1).split('.')[1]}"
License checksum failure
ERROR: nano-2.2.6-r0 do_populate_lic: QA Issue: nano: Recipe file fetches files and does not have license file information (LIC_FILES_CHKSUM) [license-checksum]
This can be fixed by adding a directive to the recipe telling it what license-info-containing file to grab, and what checksum we expect it to have.
We can follow the way the recipe generates the SRC_URI, and modify it slightly to point at the COPYING file in the same web-directory. Add this line to nano.bb:
LIC_FILES_CHKSUM = "${SITE}/v${PV_MAJOR}.${PV_MINOR}/COPYING;md5=f27defe1e96c2e1ecd4e0c9be8967949"
The MD5 checksum in this case came from manually downloading and inspecting the matching file.
Done!
Now bitbake nano ought to work, and when it is complete you should see it built nano:
/tmp/bbhello $ find ./tmp/deploy/ -name "*nano*.rpm*"
./tmp/deploy/rpm/i586/nano-dbg-2.2.6-r0.i586.rpm
./tmp/deploy/rpm/i586/nano-dev-2.2.6-r0.i586.rpm
I have recently worked on that hands-on hello world project. As far as I am concerned, I think that the source code in the book contains some bugs. Below there is a list of suggested fixes:
Inheriting native class
In fact, when you build with bitbake that you got from poky, it builds only for the target, unless you mention in your recipe that you are building for the host machine (native). You can do the latter by adding this line at the end of your recipe:
inherit native
Adding license information
It is worth mentioning that the variable LICENSE is important to be set in any recipe, otherwise bitbake rises an error. In our case, we try to build the version 2.2.6 of the nano editor, its current license is GPLv3, hence it should be mentioned as follow:
LICENSE = "GPLv3"
Using os.system calls
As the book states, you cannot dereference metadata directly from a python function. Which means it is mandatory to access metadata through the d dictionary. Bellow, there is a suggestion for the do_unpack python function, you can use its concept to code the next tasks (do_configure, do_compile):
python do_unpack() {
workdir = d.getVar("WORKDIR", True)
dl_dir = d.getVar("DL_DIR", True)
p = d.getVar("P", True)
tarball_name = os.path.join(dl_dir, p+".tar.gz")
bb.plain("Unpacking tarball")
os.system("tar -x -C " + workdir + " -f " + tarball_name)
bb.plain("tarball unpacked successfully")
}
Launching the nano editor
After successfully building your nano editor package, you can find your nano executable in the following directory in case you are using Ubuntu (arch x86_64):
./tmp/work/x86_64-linux/nano/2.2.6-r0/src/nano
Should you have any comments or questions, Don't hesitate !
Hi would like to have multiple kickstart files which use a central kickstart file for the bulk of the install and a second file for the small differences. I'm building DVDs for distribution.
The first ks contains small config and has a %include line which points to a common ks file which should do most of the work.
I'm having trouble with %include line.
Fist of all have I understood what %include is for?
Second I think I have the syntax wrong because when I boot I get the following error message:
unable to open input kickstart file: Could not open/read file:///mnt/sysimage/media/dvd/ks/common.cfg
I am installing from a DVD what is the correct path or syntax to the files stored in a sub directory called /ks/ of the DVD's root?
I have tried the following:
%include /mnt/sysimage/media/dvd/ks/common.cfg
%include cdrom:/ks/common.cfg
Does anyone have any working examples?
Thanks in advance for your support
I eventually found part of the answer
%include /mnt/stage2/ks/common.cfg
The dvd is mounted as stage2
However I now get an error message saying it cant read the file
%%include
I can see the file and less it if I hit ctrl + alt + F1
Does anyone have a working simple example of how this should be written?
Open your isolinux/isolinux.cfg from the OS and give the ks file path as below . You can enter your kick start option in boot: prompt of dvd
label 1
kernel vmlinuz
append initrd=initrd.img nofb skipddc lang= devfs=nomount ramdisk_size=8192 ks=cdrom:/option1.cfg 1
label 2
kernel vmlinuz
append initrd=initrd.img nofb skipddc lang= devfs=nomount ramdisk_size=8192 ks=cdrom:/option2 2
label 3
kernel vmlinuz
append initrd=initrd.img nofb skipddc lang= devfs=nomount ramdisk_size=8192 ks=cdrom:/option3.cfg 3
Then edit /isolinux/boot.msg and add the enter the below details
Select installation:
1) option 1
2) option 2
3) option 3
I am using unoconv to convert an ods spreadsheet to a csv file.
Here is the command:
unoconv -vvv --doctype=spreadsheet --format=csv --output= ~/Dropbox
/mariners_site/textFiles/expenses.csv ~/Dropbox/Aldeburgh/expenses
/expenses.ods
It saves the output file in the same directory as the source file, not in the specified directory. The error message is:
Output file: /home/richard/Dropbox/mariners_site/textFiles/expenses.csv
unoconv: UnoException during export phase:
Unable to store document to file:///home/richard/Dropbox/mariners_site
/textFiles/expenses.csv (ErrCode 19468)
I'm sure that this worked initially, but it has since stopped.
I have checked for permissions and they are identical for both directories.
I translated ErrCode 19468 for you and it boils down to meaning ERRCODE_SFX_DOCUMENTREADONLY.
You can find more information about the specific meaning of LibreOffice ErrCode numbers from the unoconv documentation at: https://github.com/dagwieers/unoconv/blob/master/doc/errcode.adoc
The clue here is that you have a whitespace-character between --output= and the filename (--output= ~/Dropbox
/mariners_site/textFiles/expenses.csv) and because of that unoconv gets an empty output value (which means the current directory) and is given 2 files. And that explains why you get this specific error IMO