I had written a SQL query which is has a subquery in it. It is a correct mySQL query but it does not get implemented on Pyspark
from pyspark import SparkContext, SparkConf
from pyspark.sql import SparkSession
from pyspark.sql import HiveContext
from pyspark.sql.types import *
from pyspark.sql.window import Window
from pyspark.sql.functions import *
sc = spark.sparkContext
sqlcontext = HiveContext(sc)
select location, postal, max(spend), max(revenue)
from (select a.*,
(select sum(r.revenue)
from revenue r
where r.user = a.user and
r.dte >= a.dt - interval 10 minute and
r.dte <= a.dte + interval 10 minute
) as revenue
from auction a
where a.event in ('Mid', 'End', 'Show') and
a.cat_id in (3) and
a.cat = 'B'
) a
group by location, postal;
The error eveytime I am getting is
AnalysisException: u"Correlated column is not allowed in a non-equality predicate:\nAggregate [sum(cast(revenue#17 as double)) AS sum(CAST(revenue AS DOUBLE))#498]\n+- Filter (((user#2 = outer(user#85)) && (dt#0 >= cast(cast(outer(dt#67) - interval 10 minutes as timestamp) as string))) && ((dt#0 <= cast(cast(outer(dt#67) + interval 10 minutes as timestamp) as string))
Any insights on this will be helpful.
Correlated subquery using sql syntax in PySpark is not an option, so in this case I ran the queries seperately with some twigs in sql query and left joined it using df.join to get the desired output through PySpark, this is how this issue was resolved
The code below ran perfectly well on the standalone version of PySpark 2.4 on Mac OS (Python 3.7) when the size of the input data (around 6 GB) was small. However, when I ran the code on HDInsight cluster (HDI 4.0, i.e. Python 3.5, PySpark 2.4, 4 worker nodes and each has 64 cores and 432 GB of RAM, 2 header nodes and each has 4 cores and 28 GB of RAM, 2nd generation of data lake) with larger input data (169 GB), the last step, which is, writing data to the data lake, took forever (I killed it after 24 hours of execution) to complete. Given the fact that HDInsight is not popular in the cloud computing community, I could only reference posts that complained about the low speed when writing dataframe to S3. Some suggested to repartition the dataset, which I did, but it did not help.
from pyspark.sql import SparkSession
from pyspark.sql.types import ArrayType, StringType, IntegerType, BooleanType
from pyspark.sql.functions import udf, regexp_extract, collect_set, array_remove, col, size, asc, desc
from pyspark.ml.fpm import FPGrowth
import os
os.environ["PYSPARK_PYTHON"] = "/usr/bin/python3.5"
os.environ["PYSPARK_DRIVER_PYTHON"] = "/usr/bin/python3.5"
def work(order_path, beer_path, corpus_path, output_path, FREQ_THRESHOLD=1000, LIFT_THRESHOLD=1):
print("Creating Spark Environment...")
spark = SparkSession.builder.appName("Menu").getOrCreate()
print("Spark Environment Created!")
print("Working on Checkpoint1...")
orders = spark.read.csv(order_path)
orders.createOrReplaceTempView("orders")
orders = spark.sql(
"SELECT _c14 AS order_id, _c31 AS in_menu_id, _c32 AS in_menu_name FROM orders"
)
orders.createOrReplaceTempView("orders")
beer = spark.read.csv(
beer_path,
header=True
)
beer.createOrReplaceTempView("beer")
beer = spark.sql(
"""
SELECT
order_id AS beer_order_id,
in_menu_id AS beer_in_menu_id,
'-999' AS beer_in_menu_name
FROM beer
"""
)
beer.createOrReplaceTempView("beer")
orders = spark.sql(
"""
WITH orders_beer AS (
SELECT *
FROM orders
LEFT JOIN beer
ON orders.in_menu_id = beer.beer_in_menu_id
)
SELECT
order_id,
in_menu_id,
CASE
WHEN beer_in_menu_name IS NOT NULL THEN beer_in_menu_name
WHEN beer_in_menu_name IS NULL THEN in_menu_name
END AS menu_name
FROM orders_beer
"""
)
print("Checkpoint1 Completed!")
print("Working on Checkpoint2...")
corpus = spark.read.csv(
corpus_path,
header=True
)
keywords = corpus.select("Food_Name").rdd.flatMap(lambda x: x).collect()
orders = orders.withColumn(
"keyword",
regexp_extract(
"menu_name",
"(?=^|\s)(" + "|".join(keywords) + ")(?=\s|$)",
0
)
)
orders.createOrReplaceTempView("orders")
orders = spark.sql("""
SELECT order_id, in_menu_id, keyword
FROM orders
WHERE keyword != ''
""")
orders.createOrReplaceTempView("orders")
orders = orders.groupBy("order_id").agg(
collect_set("keyword").alias("items")
)
print("Checkpoint2 Completed!")
print("Working on Checkpoint3...")
fpGrowth = FPGrowth(
itemsCol="items",
minSupport=0,
minConfidence=0
)
model = fpGrowth.fit(orders)
print("Checkpoint3 Completed!")
print("Working on Checkpoint4...")
frequency = model.freqItemsets
frequency = frequency.filter(col("freq") > FREQ_THRESHOLD)
frequency = frequency.withColumn(
"items",
array_remove("items", "-999")
)
frequency = frequency.filter(size(col("items")) > 0)
frequency = frequency.orderBy(asc("items"), desc("freq"))
frequency = frequency.dropDuplicates(["items"])
frequency = frequency.withColumn(
"antecedent",
udf(
lambda x: "|".join(sorted(x)), StringType()
)(frequency.items)
)
frequency.createOrReplaceTempView("frequency")
lift = model.associationRules
lift = lift.drop("confidence")
lift = lift.filter(col("lift") > LIFT_THRESHOLD)
lift = lift.filter(
udf(
lambda x: x == ["-999"], BooleanType()
)(lift.consequent)
)
lift = lift.drop("consequent")
lift = lift.withColumn(
"antecedent",
udf(
lambda x: "|".join(sorted(x)), StringType()
)(lift.antecedent)
)
lift.createOrReplaceTempView("lift")
result = spark.sql(
"""
SELECT lift.antecedent, freq AS frequency, lift
FROM lift
INNER JOIN frequency
ON lift.antecedent = frequency.antecedent
"""
)
print("Checkpoint4 Completed!")
print("Writing Result to Data Lake...")
result.repartition(1024).write.mode("overwrite").parquet(output_path)
print("All Done!")
def main():
work(
order_path=169.1 GB of txt,
beer_path=4.9 GB of csv,
corpus_path=210 KB of csv,
output_path="final_result.parquet"
)
if __name__ == "__main__":
main()
I first thought this was caused by the file format parquet. However, when I tried csv, I met with the same problem. I tried result.count() to see how many rows the table result has. It took forever to get the row number, just like writing the data to the data lake.
There was a suggestion to use broadcast hash join instead of the default sort-merge join if a large dataset is joined with a small dataset. I thought it was worth trying because the smaller samples in the pilot study told me the row number of frequency is roughly 0.09% of that of lift (See the query below if you have difficulty tracking frequency and lift).
SELECT lift.antecedent, freq AS frequency, lift
FROM lift
INNER JOIN frequency
ON lift.antecedent = frequency.antecedent
With that in mind, I revised my code:
from pyspark.sql import SparkSession
from pyspark.sql.types import ArrayType, StringType, IntegerType, BooleanType
from pyspark.sql.functions import udf, regexp_extract, collect_set, array_remove, col, size, asc, desc
from pyspark.ml.fpm import FPGrowth
import os
os.environ["PYSPARK_PYTHON"] = "/usr/bin/python3.5"
os.environ["PYSPARK_DRIVER_PYTHON"] = "/usr/bin/python3.5"
def work(order_path, beer_path, corpus_path, output_path, FREQ_THRESHOLD=1000, LIFT_THRESHOLD=1):
print("Creating Spark Environment...")
spark = SparkSession.builder.appName("Menu").getOrCreate()
print("Spark Environment Created!")
print("Working on Checkpoint1...")
orders = spark.read.csv(order_path)
orders.createOrReplaceTempView("orders")
orders = spark.sql(
"SELECT _c14 AS order_id, _c31 AS in_menu_id, _c32 AS in_menu_name FROM orders"
)
orders.createOrReplaceTempView("orders")
beer = spark.read.csv(
beer_path,
header=True
)
beer.createOrReplaceTempView("beer")
beer = spark.sql(
"""
SELECT
order_id AS beer_order_id,
in_menu_id AS beer_in_menu_id,
'-999' AS beer_in_menu_name
FROM beer
"""
)
beer.createOrReplaceTempView("beer")
orders = spark.sql(
"""
WITH orders_beer AS (
SELECT *
FROM orders
LEFT JOIN beer
ON orders.in_menu_id = beer.beer_in_menu_id
)
SELECT
order_id,
in_menu_id,
CASE
WHEN beer_in_menu_name IS NOT NULL THEN beer_in_menu_name
WHEN beer_in_menu_name IS NULL THEN in_menu_name
END AS menu_name
FROM orders_beer
"""
)
print("Checkpoint1 Completed!")
print("Working on Checkpoint2...")
corpus = spark.read.csv(
corpus_path,
header=True
)
keywords = corpus.select("Food_Name").rdd.flatMap(lambda x: x).collect()
orders = orders.withColumn(
"keyword",
regexp_extract(
"menu_name",
"(?=^|\s)(" + "|".join(keywords) + ")(?=\s|$)",
0
)
)
orders.createOrReplaceTempView("orders")
orders = spark.sql("""
SELECT order_id, in_menu_id, keyword
FROM orders
WHERE keyword != ''
""")
orders.createOrReplaceTempView("orders")
orders = orders.groupBy("order_id").agg(
collect_set("keyword").alias("items")
)
print("Checkpoint2 Completed!")
print("Working on Checkpoint3...")
fpGrowth = FPGrowth(
itemsCol="items",
minSupport=0,
minConfidence=0
)
model = fpGrowth.fit(orders)
print("Checkpoint3 Completed!")
print("Working on Checkpoint4...")
frequency = model.freqItemsets
frequency = frequency.filter(col("freq") > FREQ_THRESHOLD)
frequency = frequency.withColumn(
"antecedent",
array_remove("items", "-999")
)
frequency = frequency.drop("items")
frequency = frequency.filter(size(col("antecedent")) > 0)
frequency = frequency.orderBy(asc("antecedent"), desc("freq"))
frequency = frequency.dropDuplicates(["antecedent"])
frequency = frequency.withColumn(
"antecedent",
udf(
lambda x: "|".join(sorted(x)), StringType()
)(frequency.antecedent)
)
lift = model.associationRules
lift = lift.drop("confidence")
lift = lift.filter(col("lift") > LIFT_THRESHOLD)
lift = lift.filter(
udf(
lambda x: x == ["-999"], BooleanType()
)(lift.consequent)
)
lift = lift.drop("consequent")
lift = lift.withColumn(
"antecedent",
udf(
lambda x: "|".join(sorted(x)), StringType()
)(lift.antecedent)
)
result = lift.join(
frequency.hint("broadcast"),
["antecedent"],
"inner"
)
print("Checkpoint4 Completed!")
print("Writing Result to Data Lake...")
result.repartition(1024).write.mode("overwrite").parquet(output_path)
print("All Done!")
def main():
work(
order_path=169.1 GB of txt,
beer_path=4.9 GB of csv,
corpus_path=210 KB of csv,
output_path="final_result.parquet"
)
if __name__ == "__main__":
main()
The code ran perfectly well with the same sample data on my Mac OS and as expected took less time (34 seconds vs. 26 seconds). Then I decided to run the code to HDInsight with full datasets. In the last step, which is writing data to the data lake, the task failed and I was told Job cancelled because SparkContext was shut down. I am rather new to big data and have no idea with this means. Posts on the internet said there could be many reasons behind it. Whatever the method I should use, how to optimize my code so I can get the desired output in the data lake within bearable amount of time?
I would try several things, ordered by the amount of energy they require:
Check if the ADL storage is in the same region as your HDInsight cluster.
Add calls for df = df.cache() after heavy calculations, or even write and then read the dataframes into and from a cache storage in between these calculations.
Replace your UDFs with "native" Spark code, since UDFs are one of the performance bad practices of Spark.
I have figured it out after five days' struggle. Here are the approaches that I took to optimize the code. The time of code execution dropped from more than 24 hours to around 10 minutes. Code optimization is really really important.
As David Taub below pointed out, use df.cache() after heavy computation or before feeding the data to the model. I used df.cache().count() since calling .cache() on its own is lazily evaluated but the following .count() forces an evaluation of the entire dataset.
Use flashtext instead of regular expression to extract keywords. This greatly improves code performance.
Be careful with joins / merge. It might get extremely slow due to data skewness. Always think about ways to avoid unnecessary joins.
Set minSupport for FPGrowth. This significantly reduces the time when calling model.freqItemsets.
I want to replace an column in an dataframe. need to get the scala
syntax code for this
Controlling_Area = CC2
Hierarchy_Name = CC2HIDNE
Need to write as : HIDENE
ie: remove the Controlling_Area present in Hierarchy_Name .
val dfPC = ReadLatest("/Full", "parquet")
.select(
LRTIM( REPLACE(col("Hierarchy_Name"),col("Controlling_Area"),"") ),
Col(ColumnN),
Col(ColumnO)
)
notebook:3: error: not found: value REPLACE
REPLACE(col("Hierarchy_Name"),col("Controlling_Area"),"")
^
Expecting to get the LTRIM and replace code in scala
You can use withColumnRenamed to achieve that:
import org.apache.spark.sql.functions
val dfPC = ReadLatest("/Full", "parquet")
.withColumnRenamed("Hierarchy_Name","Controlling_Area")
.withColumn("Controlling_Area",ltrim(col("Controlling_Area")))
Below is the T-SQL code attached. I tried to convert it to pyspark using window functions which is also attached.
case
when eventaction = 'IN' and lead(eventaction,1) over (PARTITION BY barcode order by barcode,eventdate,transactionid) in('IN','OUT')
then lead(eventaction,1) over (PARTITION BY barcode order by barcode,eventdate,transactionid)
else ''
end as next_action
Pyspark code giving error using window function lead
Tgt_df = Tgt_df.withColumn((('Lead', lead('eventaction').over(Window.partitionBy("barcode").orderBy("barcode","transactionid", "eventdate")) == 'IN' )|
('1', lead('eventaction').over(Window.partitionBy("barcode").orderBy("barcode","transactionid", "eventdate")) == 'OUT')
, (lead('eventaction').over(Window.partitionBy("barcode").orderBy("barcode","transactionid", "eventdate"))).otherwise('').alias("next_action")))
But it's not working. What to do!?
The withColumn method should be used as df.withColumn('name_of_col', value_of_column), that's why you have an error.
From your T-SQL requests, the corresponding pyspark code should be :
import pyspark.sql.functions as F
from pyspark.sql.window import Window
w = Window.partitionBy("barcode").orderBy("barcode","transactionid", "eventdate")
Tgt_df = Tgt_df.withColumn('next_action',
F.when((F.col('event_action')=='IN')&(F.lead('event_action', 1).over(w).isin(['IN', 'OUT'])),
F.lead('event_action', 1).over(w)
).otherwise('')
)
I have a code similar to this:
from pyspark.sql.functions import udf
from pyspark.sql.types import BooleanType
def regex_filter(x):
regexs = ['.*123.*']
if x and x.strip():
for r in regexs:
if re.match(r, x, re.IGNORECASE):
return True
return False
filter_udf = udf(regex_filter, BooleanType())
df_filtered = df.filter(filter_udf(df.fieldXX))
I want to use "regexs" var to verify if any digit "123" is in "fieldXX"
i don't know what i did wrong!
Could anyone help me with this?
Regexp is incorrect.
I think it should be something like:
regexs = '.*[123].*'
You can use SQL function to attain this
df.createOrReplaceTempView("df_temp")
df_1 = spark.sql("select *, case when col1 like '%123%' then 'TRUE' else 'FALSE' end col2 from df_temp")
Disadvantage in using UDF is you cannot save the data frame back or do any manipulations in that data frame further.