I am trying to run a comsol matlab livelink script on a cluster. I am trying to do this in non-interactive mode. In interactive mode, I just do "comsol mphserver matlab matlabscript -nodesktop -mlnosplash" and it works. I can't get it to work in non-interactive mode. I am using comsol/6.0. Has anyone ever had this issue? How did you solve it?
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At the company I work for, we use Bit9 as part of our security stack. We are in the process of upgrade the version to 8.0 (and eventually 8.2) on all of our devices. Between the automatic upgrades and a different script I wrote, I was able to upgrade about 1000. But there are still about 700 left where the CLI password from Bit9 is not working, and the devices are not checking in to allow auto upgrade.
Bit9 has come back and suggested the following:
Boot the endpoint into Safe Mode w/ Networking
Run a script that executes the following Administrative commands from a CMD prompt (please note the proper spacing between start= disabled):
sc config parity start= disabled
sc config paritydriver start= disabled
Boot into Normal Mode
I've written a script that is supposed to do all of this, except I cannot for the life of me get the script to run once the device starts in safe mode. I've tried everything that I can think of:
HKLM:\SOFTWARE\Microsoft\Windows\CurrentVersion\Run
HKLM:\SOFTWARE\Microsoft\Windows\CurrentVersion\RunOnce
Placing a batch file in the Startup folder
Scheduled task
Nothing I do is working.
And one other caveat, the user that is logging in (safe mode & normal mode) is not an administrator. It is a regular user. I am kicking off the initial script with BigFix, which does run as an administrator.
Thanks in advance.
I was finally able to get it to work. The service idea was the starting point, though instead of creating a "fake" service, I actually wrote a service in C# that calls the PS script. I was then able to edit the registry, where I made that service able to start in safe mode. That seemed to do the trick. Now the only issue is that I can't seem to disable safe mode programmatically, but I will ask that as a separate question.
Is it possible to setup Matlab to run a specific script in the background when the user is NOT logged in? The script works fine on its own on a Windows Server 2008 machine with Matlab R2014a. It doesn't need a gui for the script to complete, but I'm guessing that Matlab requires user-specific environments to be set. Is there a place where this can be set ahead of time maybe?
I have tried "Task Scheduler" and it works just fine, but you have to set the setting to run only when that particular user is logged in or else nothing happens. The problem, of course, is the user session would require continuous monitoring in order to remain logged in (power outage, updates, etc.).
Has anyone dealt with this in the past? We've considered compiling it, but apparently there are certain functions and objects that the script uses (I didn't write it) that don't carryover during compilation.
Any thoughts or suggestions are welcome!
I've done some work for a client where we have an instance of MATLAB running continuously on a server, doing some stuff. The server occasionally fails (power outages, IT dept screw-ups etc), and it needs to be brought back up automatically.
Note that MATLAB does need to be run as a user for licensing reasons, so our MATLAB instance always runs under a designated account, with a license dedicated to running that instance continuously.
We have a Windows batch file to start up a suitable MATLAB instance, that contains a command similar to the following:
CALL matlab.exe -nosplash -nodesktop -sd "myStartupFolder" -r "myMATLABCommand"
We then have a scheduled task set up so that 5 minutes after that account logs in, the batch file runs, and we have Windows set up so that when Windows starts, that account is automatically logged in (I'm no Windows admin, but I think we had to do some weird stuff in order to enable that, such as adding the account to some special domain group, or giving the account special privileges - you may need to research that a little more).
Anyway, that solved the issue for us. If the server goes down and then recovers (perhaps IT bring it back up), the account is automatically logged in, the batch file runs, and the MATLAB instance is brought back up. If we need (rarely) to log in directly under that account without the task running, we have a 5 minute window to stop the scheduled task from running, which is no problem.
Hope that helps!
Unfortunately and afaik, Matlab can only be startet without GUI on Linux (maybe on Mac OS X too?).
~$ cat /tmp/stackoverflow.m
s='stackoverflow';
length(s)
~$ ./R2013a/bin/matlab -nodisplay -nojvm -nodesktop -nosplash -r "run /tmp/stackoverflow.m, exit"
< M A T L A B (R) >
Copyright 1984-2013 The MathWorks, Inc.
R2013a (8.1.0.604) 64-bit (glnxa64)
February 15, 2013
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
ans =
13
~$
However Matlab itself is not capable of Shebang #! in a Bash script. So it's always a workaround.
A better solution might be to run your Matlab instance continuously and write a daemon/script, which will run you .m script time-dependent for example.
A much better way is to use the Matlab Coder Toolbox (if you have it) and compile a stand-alone binary from you .m file. This binary should be easily runable with task schedular on Windows.
Can I connect to matlab GUI remotely via ssh and "screen" simultaneously?
Using commands ssh, "screen" and "maltlab -nodesktop" seem to work without graphic interface ,but I need GUI to use specific toolbox.
And I need to disconnect and reconnect it later, because the process takes long time.
My environment is :
Server (matlab) - linux ubuntu
Client - mac osx
Can anyone help me with this?
I don't think so - your best bet is probably a remote desktop solution.
https://www.nomachine.com/ is the first coming to my mind...
My desktop runs in Ubuntu 12.04 LTS and the matlab is R2013a. I'm doing local parallel computing(use multicores of my desktop).
Before using the following command to start matlabpool, I've already validated the local configuration of parallel computing toolbox. To verify this point, I've attached the figure 1.
figure 1
matlabpool local 4
But it takes like forever to start the matlabpool. After running 10 minutes, the command line is still like:
Starting matlabpool using the 'local' profile ...
So I use ctrl+c to stop it. It always give me:
Operation terminated by user during
parallel.internal.pool.InteractiveClient>iGetSingleConnection (line
737)
Based on the above information, it seems that it get stuck at iGetSingleConnection.
Thanks,
I don't know about Ubuntu, but in Windows when you install a new version of MATLAB, the old firewall rules do not apply to the new executables. So, you need to open the firewall to allow access to the smpd.exe, mpiexec.exe and MATLAB.exe processes. For example, in Windows, I get one of these:
Then I need to go into Windows firewall settings and make the rules. Here is how to create an inbound program rule in Windows 7/8. Maybe there is something similar in Ubuntu.
Howdy, I am trying to run matlab remotely on windows via OpenSSH installed with Cygwin, but launching matlab in windows without the GUI seems to be impossible.
If i am logged in locally, I can launch matlab -nodesktop -nodisplay -r script, and matlab will launch up a stripped down GUI and do the command.
However, this is impossible to do remotely via ssh, as, matlab needs to display the GUI.
Does anyone have any suggestions or work arounds?
Thanks,
Bob
Short story: is your script calling exit()? Are you using "-wait"?
Long story: I think you're fundamentally out of luck if you want to interact with it, but this should work if you just want to batch jobs up. Matlab on Windows is a GUI application, not a console application, and won't interact with character-only remote connectivity. But you can still launch the process. Matlab will actually display the GUI - it will just be in a desktop session on the remote computer that you have no access to. But if you can get it to do your job without further input, this can be made to work, for some value of "work".
Your "-r script" switch is the right direction. But realize that on Windows, Matlab's "-r" behavior is to finish the script and then go back to the GUI, waiting for further input. You need to explicitly include an "exit()" call to get your job to finish, and add try/catches to make sure that exit() gets reached. Also, you should use a "-logfile" switch to capture a copy of all the command window output to a log file so you can see what it's doing (since you can't see the GUI) and have a record of prior runs.
Also, matlab.exe is asynchronous by default. Your ssh call will launch Matlab and return right away unless you add the "-wait" switch. Check the processes on the machine you're sshing to; Matlab may actually be running. Add -wait if you want it to block until finished.
One way to do this stuff just use -r to call to a standard job wrapper script that initializes your libraries and paths, runs a job, and does cleanup and exit. You'll also want to make a .bat wrapper that sets up the -logfile switch to point to a file with the job name, timestamp, and other info in it. Something like this at the M-code level.
function run_batch_job(jobname)
try
init_my_matlab_library(); % By calling classpath(), javaclasspath(), etc
feval(jobname); % assumes jobname is an M-file on the path
catch err
warning('Error occurred while running job %s: %s', jobname, err.message)
end
try
exit();
catch err
% Yes, exit() can throw errors
java.lang.System.exit(1); % Scuttle the process hard to make sure job finishes
end
% If your code makes it to here, your job will hang
I've set up batch job systems using this style in Windows Scheduler, Tidal, and TWS before. I think it should work the same way under ssh or other remote access.
A Matlab batch system on Windows like this is brittle and hard to manage. Matlab on Windows is fundamentally not built to be a headless batch execution system; assumptions about an interactive GUI are pervasive in it and hard to work around. Low-level errors or license errors will pop up modal dialog boxes and hang your job. The Matlab startup sequence seems to have race conditions. You can't set the exit status of MATLAB.exe. There's no way of getting at the Matlab GUI to debug errors the job throws. The log file may be buffered and you lose output near hangs and crashes. And so on.
Seriously consider porting to Linux. Matlab is much more suitable as a batch system there.
If you have the money or spare licenses, you could also use the Matlab Distributed Computing toolbox and server to run code on remote worker nodes. This can work for parallelization or for remote batch jobs.
There are two undocumented hacks that reportedly fix a similar problem - they are not guarantied to solve your particular problem but they are worth a try. Both of them depend on modifying the java.opts file:
-Dsun.java2d.pmoffscreen=false
Setting this option fixes a problem of extreme GUI slowness when launching Matlab on a remote Linux/Solaris computer.
-Djava.compiler=NONE
This option disables the Java just-in-time compiler (JITC). Note that it has no effect on the Matlab interpreter JITC. It has a similar effect to running Matlab with the '–nojvm' command-line option. Note that this prevents many of Matlab's GUI capabilities. Unfortunately, in some cases there is no alternative. For example, when running on a remote console or when running pre-2007 Matlab releases on Intel-based Macs. In such cases, using the undocumented '-noawt' command-line option, which enables the JVM yet prevents JAVA GUI, is a suggested compromise.
Using putty use ssh -X remote "matlab" it should work