I am trying to run unit test from terminal but it is failing each time. The following message is what I get when I try to run otest in terminal.
objc[42339]: GC: forcing GC OFF because OBJC_DISABLE_GC is set
objc[42339]: found old-ABI metadata in image /Developer/Tools/otest !
Segmentation fault
I need the output of the unit test for Hudson integration and I have the iOS deployment target set to 4.2. Here is what I am attempting to run.
export SDKROOT=/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator4.2.sdk
export BUILD_DIR=~/Documents/XCode/MyApp/build
export BUILD_PRODUCTS_DIR=~/Documents/XCode/MyApp/build/Debug-iphonesimulator
export DYLD_ROOT_PATH=$SDKROOT
export DYLD_FRAMEWORK_PATH=$BUILD_PRODUCTS_DIR:$SDKROOT
export IPHONE_SIMULATOR_ROOT=$SDKROOT
export CFFIXED_USER_HOME="~/Library/Application Support/iPhone Simulator/User/"
export OBJC_DISABLE_GC=YES
export DYLD_LIBRARY_PATH=$BUILD_PRODUCTS_DIR:$SDKROOT
export DYLD_NEW_LOCAL_SHARED_REGIONS=YES
export DYLD_NO_FIX_PREBINDING=YES
arch -i386 /Developer/Tools/otest MyApp.octest
bbum is correct I was using the wrong otest. Described here I needed to run the following
$ find /Developer -name otest
/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator3.2.sdk/Developer/usr/bin/otest
/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator4.0.sdk/Developer/usr/bin/otest
/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator4.1.sdk/Developer/usr/bin/otest
/Developer/Platforms/iPhoneSimulator.platform/Developer/SDKs/iPhoneSimulator4.2.sdk/Developer/usr/bin/otest
/Developer/Tools/otest
Obviously by the output I chose the correct otest for my application and it worked perfectly.
Related
My goal is to use bcftools to check that the reference alleles in my dataset (vcf file) match with a reference genome (fasta file) using the fixref plugin.
Working on command line, I first set the following environment:
export BCFTOOLS_PLUGINS=/path/to/bcftools/plugins
The following code is recommended for test datasets with mismatches:
bcftools +fixref test.bcf -Ob -o output.bcf -- -f ref.fa -m top
When I run this code using my own files (please note that my data is .vcf, not .bcf) I get the following error:
[main] Unrecognized command
If I simply enter:
bcftools
I get a list of the only 5 commands (view, index, cat, ld, ldpair) that I can use. So although I've set the environment, does it somehow need to be activated? Do I need to run my command through a bash script?
bcftools
was pointing to a deprecated version of bcftools (0.1.19) in ../bin/, while
BCFTOOLS_PLUGINS=/path/to/bcftools/plugins
was pointing to the plugins for bcftools version 1.10.2 outside /bin/
Replacing ../bin/bcftools (0.1.19 with 1.10.2) was the fix.
I have installed through Mainteinance Tool Qt 5.12.5 and the sources. I have the next directories:
C:\Qt\5.12.5\Src
C:\Qt\Tools\mingw730_32\
C:\Qt\Tools\mingw730_64\
On the other hand, I have read that downloable Postgres version is compiled with MSVC, and I must to compile my own version. I have do it following link, and now I have a postgresql version in c:\pgsql
Finally I have added c:\pgsql to user Path
Next step, I have opened PowerShell in Admin mode and I´ve gone to C:\Qt\5.12.5\Src\.
Next, set the env path for this PowerShell session:
$env:Path += ";C:\Qt\Tools\mingw730_64\bin\;C:\Qt\5.12.5\Src;C:\pgsql\include\;C:\pgsql\lib\;C:\pgsql\bin\" (setting the pgsql path again....)
After that, I execute configure.bat like that:
configure -v -static -release -static-runtime -platform win32-g++ -prefix C:\Qt\5.12.5\Estatico\ -opensource -confirm-license -qt-zlib -qt-pcre -qt-libpng -qt-libjpeg -qt-freetype -opengl desktop -no-openssl -opensource -confirm-license -skip webengine -make libs -nomake tools -nomake examples -nomake tests -sql-psql
But I have get this error:
ERROR: Feature 'sql-psql' was enabled, but the pre-condition 'libs.psql' failed.
Searching in config.log I can read those lines:
loaded result for library config.qtbase_sqldrivers.libraries.psql
Trying source 0 (type pkgConfig) of library psql ...
pkg-config use disabled globally.
=> source produced no result.
Trying source 1 (type psqlConfig) of library psql ...
pg_config not found.
=> source produced no result.
Trying source 2 (type psqlEnv) of library psql ...
None of [liblibpq.dll.a liblibpq.a libpq.dll.a libpq.a libpq.lib] found in [] and global paths.
=> source produced no result.
Trying source 3 (type psqlEnv) of library psql ...
=> source failed condition '!config.win32'.
test config.qtbase_sqldrivers.libraries.psql FAILED
What can I do or what is the properly way to do that?
Thank you in advance.
UPDATE
There are similar question here but it hasn´t been solved, and those question ask about Visual Studio.
I want to compile it under mingw.
The solution suggested by #Soheil Armin doesn´t work too
The solution suggested by #Soheil Armin works fine, but I need to delete the entire source tree and reinstall it as he suggested. If not, a new configure won't work.
Also, the ^ character can be saved:
configure <your parameters>
PSQL_LIBS="C:\pgsql\lib\libpq.a"
-I "C:\pgsql\include"
-L "C:\pgsql\lib"
You need to explicitly define library paths of Postgres.
configure <your parameters> ^
PSQL_LIBS="C:\pgsql\lib\libpq.a" ^
-I "C:\pgsql\include" ^
-L "C:\pgsql\lib"
To all,
I'm trying to run a makefile using the 'mex' command through Matlab. However,
when I try to run my test .m script using 'compile_mex;" I get the following error:
>> compile_mex
xcodebuild: error: SDK "macosx10.7" cannot be located.
xcrun: error: unable to find utility "clang++", not a developer tool or in PATH
mex: compile of ' "mex/perform_nlmeans_mex.cpp"' failed.
I've read through a couple of sources that a shell script may need to be written
to physically add the clang++ utility through a library that I need to import into
Matlab directly. Does anyone know how to fix/perform this? A sample or example shell
script and directions on how to use that script within or in coordination with
Matlab would be great if anyone can provide me this. Thanks!
A temporary workaround is given here. Effectively it amounts to getting MATLAB to use a different SDK (as the 10.7 SDK is removed in Mavericks). From the link:
Just for clarity in case someone else runs into the same issue, I
changed four lines in mexopts.sh:
# CC='xcrun -sdk macosx10.7 clang'
CC='xcrun -sdk macosx10.8 clang'
# MW_SDK_TEMP="find `xcode-select -print-path` -name MacOSX10.7.sdk"
MW_SDK_TEMP="find `xcode-select -print-path` -name MacOSX10.8.sdk"
# MACOSX_DEPLOYMENT_TARGET='10.7'
MACOSX_DEPLOYMENT_TARGET='10.8'
# CXX='xcrun -sdk macosx10.7 clang++'
CXX='xcrun -sdk macosx10.8 clang++'
I also had to do "mex -setup" from inside matlab in order to copy
mexopts.sh to my user directory.
When I did this change I directly edited ~/.matlab/R2013a/mexopts.sh rather than .matlab/R2013a/mexopts.sh – I felt this was slightly safer. It also removes the requirement to rerun mex -setup, but of course this means that the file can be overwritten.
For 10.9:
CC='xcrun -sdk macosx10.9 clang'
MW_SDK_TEMP="find `xcode-select -print-path` -name MacOSX10.9.sdk"
MACOSX_DEPLOYMENT_TARGET='10.9'
CXX='xcrun -sdk macosx10.9 clang++'
I am new to S-Functions and Real TIme WorkShop. The S-Function has been created using an Embedded Matlab Function. The S-Function Works fine, but when i try to build the same, i get the following error report:
It appears that the build process was unable to locate some utility (e.g. make, compiler, linker, etc.). Please verify your path and tool environment variables are correct. You should be able to execute the make command: .\Radius_S_func2.bat at an MS DOS Command Prompt in the directory: C:\Users\skaushik\Desktop\Matlab Models\WIP\TESTs\Sfunc_2\Radius_S_func2_Source Currently, this generates the following error:
C:\Users\skaushik\Desktop\Matlab Models\WIP\TESTs\Sfunc_2\Radius_S_func2_Source>set MATLAB=C:\MATLAB\R2010b
C:\Users\skaushik\Desktop\Matlab Models\WIP\TESTs\Sfunc_2\Radius_S_func2_Source>.......\u_Utils\Build\make -f Radius_S_func2.mk GENERATE_REPORT=0 INCLUDE_MDL_TERMINATE_FCN=0 COMBINE_OUTPUT_UPDATE_FCNS=1 MAT_FILE=0 MULTI_INSTANCE_CODE=0 INTEGER_CODE=0 PORTABLE_WORDSIZES=0 GENERATE_ERT_S_FUNCTION=0 GENERATE_ASAP2=0 EXT_MODE=0 EXTMODE_STATIC_ALLOC=0 EXTMODE_STATIC_ALLOC_SIZE=1000000 EXTMODE_TRANSPORT=0 TMW_EXTMODE_TESTING=0 MODELLIB=Radius_S_func2lib.lib RELATIVE_PATH_TO_ANCHOR=.. MODELREF_TARGET_TYPE=NONE OPTS="-DRT -DUSE_RTMODEL -DERT" The system cannot find the path specified.
PLease guide me how to understand the error, so i can take care of it myself.
Thank you!!
Solution: The build target was not specified therefore matlab gave the above mentioned error. To resolve this one should specify the build environment for a specific target.
I am trying to load a graph in fuseki. The server is working as it should.
But when I try s-put inside the fuseki folder it tells me s-put is not found?!
hdeus$ ls
DEPENDENCIES config.ttl s-delete
Data fuseki s-get
LICENSE fuseki-server s-head
NOTICE fuseki-server.bat s-post
ReleaseNotes.txt fuseki-server.jar s-put
config-examples.ttl fuseki_config.ttl s-query
config-inf-tdb.ttl log4j.properties s-update
config-tdb.ttl pages s-update-form
hdeus$ sudo ./s-put http://localhost:3030/ds/data default Data/books.ttl
sudo: ./s-put: command not found
Any idea what the problem might be? I tried copy/paste s-put from the ls output but stil nothing... I am working in mac os X
Is the file executable? If you unpacked from the zip file, you need to set the s-* executable. Also, you need ruby installed.