Is there a way to handle the last case differently in a Scala for loop? - scala

For example suppose I have
for (line <- myData) {
println("}, {")
}
Is there a way to get the last line to print
println("}")

Can you refactor your code to take advantage of built-in mkString?
scala> List(1, 2, 3).mkString("{", "}, {", "}")
res1: String = {1}, {2}, {3}

Before going any further, I'd recommend you avoid println in a for-comprehension. It can sometimes be useful for tracking down a bug that occurs in the middle of a collection, but otherwise leads to code that's harder to refactor and test.
More generally, life usually becomes easier if you can restrict where any sort of side-effect occurs. So instead of:
for (line <- myData) {
println("}, {")
}
You can write:
val lines = for (line <- myData) yield "}, {"
println(lines mkString "\n")
I'm also going to take a guess here that you wanted the content of each line in the output!
val lines = for (line <- myData) yield (line + "}, {")
println(lines mkString "\n")
Though you'd be better off still if you just used mkString directly - that's what it's for!
val lines = myData.mkString("{", "\n}, {", "}")
println(lines)
Note how we're first producing a String, then printing it in a single operation. This approach can easily be split into separate methods and used to implement toString on your class, or to inspect the generated String in tests.

I agree fully with what has been said before about using mkstring, and distinguishing the first iteration rather than the last one. Would you still need to distinguish on the last, scala collections have an init method, which return all elements but the last.
So you can do
for(x <- coll.init) workOnNonLast(x)
workOnLast(coll.last)
(init and last being sort of the opposite of head and tail, which are the first and and all but first). Note however than depending on the structure, they may be costly. On Vector, all of them are fast. On List, while head and tail are basically free, init and last are both linear in the length of the list. headOption and lastOption may help you when the collection may be empty, replacing workOnlast by
for (x <- coll.lastOption) workOnLast(x)

You may take the addString function of the TraversableOncetrait as an example.
def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder = {
var first = true
b append start
for (x <- self) {
if (first) {
b append x
first = false
} else {
b append sep
b append x
}
}
b append end
b
}
In your case, the separator is }, { and the end is }

If you don't want to use built-in mkString function, you can make something like
for (line <- lines)
if (line == lines.last) println("last")
else println(line)
UPDATE: As didierd mentioned in comments, this solution is wrong because last value can occurs several times, he provides better solution in his answer.
It is fine for Vectors, because last function takes "effectively constant time" for them, as for Lists, it takes linear time, so you can use pattern matching
#tailrec
def printLines[A](l: List[A]) {
l match {
case Nil =>
case x :: Nil => println("last")
case x :: xs => println(x); printLines(xs)
}
}

Other answers are rightfully pointed to mkString, and for a normal amount of data I would also use that.
However, mkString builds (accumulates) the end-result in-memory through a StringBuilder. This is not always desirable, depending on the amount of data we have.
In this case, if all we want is to "print" we don't need to build the big-result first (and maybe we even want to avoid this).
Consider the implementation of this helper function:
def forEachIsLast[A](iterator: Iterator[A])(operation: (A, Boolean) => Unit): Unit = {
while(iterator.hasNext) {
val element = iterator.next()
val isLast = !iterator.hasNext // if there is no "next", this is the last one
operation(element, isLast)
}
}
It iterates over all elements and invokes operation passing each element in turn, with a boolean value. The value is true if the element passed is the last one.
In your case it could be used like this:
forEachIsLast(myData) { (line, isLast) =>
if(isLast)
println("}")
else
println("}, {")
}
We have the following advantages here:
It operates on each element, one by one, without necessarily accumulating the result in memory (unless you want to).
Because it does not need to load the whole collection into memory to check its size, it's enough to ask the Iterator if it's exhausted or not. You could read data from a big file, or from the network, etc.

Related

Unable to get println working in Grouped Integer Range map function

I am experimenting with below code:
def TestRun(n: Int): Unit = {
(1 to n)
.grouped(4)
.map(grp => { println("Group length is: " + grp.length)})
}
TestRun(100)
And I am a bit surprised that I am not able to see any output of println after executing the program. Code compiled successfully and ran, but without any expected output.
Kindly point me what mistake I am doing.
The reason there is no output is that Range gives an Iterator which is lazy. This means that it won't create any data until it is asked. Likewise the grouped and map methods also return a lazy Iterator, so the result is a Iterator that will return a set of values only when asked. TestRun never asks for the data, so it is never generated.
One way round this is to use foreach rather than map because foreach is eager (the opposite of lazy) and will take each value from the Iterator in turn.
Another way would be to force the Iterator to become a concrete collection using something like toList:
def TestRun(n: Int): Unit = {
(1 to n)
.grouped(4)
.map(grp => { println("Group length is: " + grp.length)})
.toList
}
TestRun(100)

Scala: what is the interest in using Iterators?

I have used Iterators after have worked with Regexes in Scala but I don't really understand the interest.
I know that it has a state and if I call the next() method on it, it will output a different result every time, but I don't see anything I can do with it and that is not possible with an Iterable.
And it doesn't seem to work as Akka Streams (for example) since the following example directly prints all the numbers (without waiting one second as I would expect it):
lazy val a = Iterator({Thread.sleep(1000); 1}, {Thread.sleep(1000); 2}, {Thread.sleep(1000); 3})
while(a.hasNext){ println(a.next()) }
So what is the purpose of using Iterators?
Perhaps, the most useful property of iterators is that they are lazy.
Consider something like this:
(1 to 10000)
.map { x => x * x }
.map { _.toString }
.find { _ == "4" }
This snippet will square 10000 numbers, then generate 10000 strings, and then return the second one.
This on the other hand:
(1 to 10000)
.iterator
.map { x => x * x }
.map { _.toString }
.find { _ == "4" }
... only computes two squares, and generates two strings.
Iterators are also often useful when you need to wrap around some poorly designed (java?) objects in order to be able to handle them in functional style:
val rs: ResultSet = jdbcQuery.executeQuery()
new Iterator {
def next = rs
def hasNext = rs.next
}.map { rs =>
fetchData(rs)
}
Streams are similar to iterators - they are also lazy, and also useful for wrapping:
Stream.continually(rs).takeWhile { _.next }.map(fetchData)
The main difference though is that streams remember the data that gets materialized, so that you can traverse them more than once. This is convenient, but may be costly if the original amount of data is very large, especially, if it gets filtered down to much smaller size:
Source
.fromFile("huge_file.txt")
.getLines
.filter(_ == "")
.toList
This only uses, roughly (ignoring buffering, object overhead, and other implementation specific details), the amount of memory, necessary to keep one line in memory, plus however many empty lines there are in the file.
This on the other hand:
val reader = new FileReader("huge_file.txt")
Stream
.continually(reader.readLine)
.takeWhile(_ != null)
.filter(_ == "")
.toList
... will end up with the entire content of the huge_file.txt in memory.
Finally, if I understand the intent of your example correctly, here is how you could do it with iterators:
val iterator = Seq(1,2,3).iterator.map { n => Thread.sleep(1000); n }
iterator.foreach(println)
// Or while(iterator.hasNext) { println(iterator.next) } as you had it.
There is a good explanation of what iterator is http://www.scala-lang.org/docu/files/collections-api/collections_43.html
An iterator is not a collection, but rather a way to access the
elements of a collection one by one. The two basic operations on an
iterator it are next and hasNext. A call to it.next() will return the
next element of the iterator and advance the state of the iterator.
Calling next again on the same iterator will then yield the element
one beyond the one returned previously. If there are no more elements
to return, a call to next will throw a NoSuchElementException.
First of all you should understand what is wrong with your example:
lazy val a = Iterator({Thread.sleep(1); 1}, {Thread.sleep(1); 2},
{Thread.sleep(2); 3}) while(a.hasNext){ println(a.next()) }
if you look at the apply method of Iterator, you'll see there are no calls by name,so all Thread.sleep are calling at the same time when apply method calls. Also Thread.sleep takes parameter of time to sleep in milliseconds, so if you want to sleep your thread on one second you should pass Thread.sleep(1000).
The companion object has additional methods which allow you do the next:
val a = Iterator.iterate(1)(x => {Thread.sleep(1000); x+1})
Iterator is very useful when you need to work with large data. Also you can implement your own:
val it = new Iterator[Int] {
var i = -1
def hasNext = true
def next(): Int = { i += 1; i }
}
I don't see anything I can do with it and that is not possible with an Iterable
In fact, what most collection can do can also be done with Array, but we don't do that because it's much less convenient
So same reason apply to iterator, if you want to model a mutable state, then iterator makes more sense.
For example, Random is implemented in a way resemble to iterator because it's use case fit more naturally in iterator, rather than iterable.

Scala - return empty Option if value contained in array

I'm splitting an input of type Option[String] into an Option[Array[String]] as follows:
val input:Option[String] = Option("a=b,1000,what?")
val result: Option[Array[String]] = input map { _.split(",") }
I want to add a test whereby if any member of the array matches (eg, is an Long less than 0), the whole array is discarded and an empty Option returned.
Use filter to perform a test on the content of an Option.
Use exists to check whether any member of the collection fullfils a condition.
result.filter(! _.exists(s => test(s)))
or
result.filterNot(_.exists(s => test(s)))
Have you considered using find() on the collection ? If it returns a Some(x), then something has satisfied the condition.
list.find(_ < 0) match {
case Some(x) => None
case None => Some(list)
}
Of course you know that you can split and then filter as #ziggystar suggests, but if you have a really big Stringand an element at the beginning matches then it's pointless to finish splitting the string when you know it's going to be discarded.
In this case, if you're worried about time efficiency, you can use a Stream and re-implement the split operation, something like this:
def result(input:Option[String]):Option[Seq[String]] = {
def split(c: Char, chars:Stream[Char]):Stream[String] = {
val (head,tail) = chars span(_ != c)
head.mkString #:: (if(tail isEmpty) Stream.empty else split(c, tail tail))
}
input map {s => split(',', Stream(s:_*)) } filter (_.forall (s => !test(s)))
}
Note that the map/filter structure stays the same, but it is now short-circuiting due to the use of Stream.
If it's a really big string you probably have it as a Stream[Char] already which means you don't even have the memory overhead of hanging on the original String.

Why scala's pattern maching does not work in for loops for type matching?

I'm coding against an API that gives me access to remote file system. The API returns a list of files and directories as list of node objects (parent to file and directory).
I want to work only on a directories, ignoring files. I've tried to use type pattern matching in for loop but it does not work:
for {
dir: CSDir <- workarea.getChildren() // <-- I'm getting an error here complaining about type conversion
} {
println(dir)
}
Here is a similar example using scala basic objects to run it without dependencies:
val listOfBaseObjects:List[Any] = List[Any]("a string", 1:Integer);
for (x: String <- listOfObjects) {
println(x)
}
I end up using a regular pattern matching in side of for loop and that works fine:
// This works fien
for (child <- workarea.getChildren()) {
child match {
case dir: CSDir => println(dir)
case _ => println("do not nothing")
}
}
Question:
Can you tell me why the first /second example does not work in scala 1.9?
In the "Programming in Scala" the for loop is advertised to use the same pattern matching as the match so it should work.
If the for and match are different it would be great if you could point me to some articles with more details. What about pattern matching in assignment?
Update:
I can't accept an answer that states that it is impossible to skip elements in for loop as this contradicts with the "Prog. in scala". Here is a fragment from section 23.1:
pat <- expr ... The pattern pat gets matched one-by-one against all elements of that list. ... if the match fails, no MatchError is thrown. Instead, the element is simply discarded from the iteration
and indeed the following example works just fine:
scala> val list = List( (1,2), 1, 3, (3,4))
scala> for ((x,y) <- list) { println (x +","+ y) }
1,2
3,4
Why then type matching does not work?
This is the long-standing issue 900 and has been discussed many times before. The common workaround is to use something like:
for (y#(_y:String) <- listOfBaseObjects) {
println(y)
}
A nicer version is provided by Jason Zaugg in the comments to the above-mentioned ticket:
object Typed { def unapply[A](a: A) = Some(a) }
for (Typed(y : String) <- listOfBaseObjects) {
println(y)
}
What you want to do is essentially: iterate over all elements of workarea.getChildren() that are of type CSDir (in other words: matching some criteria). Ordinary loop/for comprehension iterates over all elements. You cannot say: iterate over all elements having this type and skip others. You must be more explicit.
What do you think about:
workarea.getChildren() collect {case dir: CSDir => dir} foreach println
It does exactly what you want: collect all elements of workarea.getChildren() and for each of them call println.
How about this:
val listOfBaseObjects: List[Any] = List[Any]("a string", 1:Integer);
for (x <- listOfBaseObjects if x.isInstanceOf[String]) {
println(x)
}

Scala functional way of processing large scala data with lazy collections

I am trying to figure out memory-efficient AND functional ways to process a large scale of data using strings in scala. I have read many things about lazy collections and have seen quite a bit of code examples. However, I run into "GC overhead exceeded" or "Java heap space" issues again and again.
Often the problem is that I try to construct a lazy collection, but evaluate each new element when I append it to the growing collection (I don't now any other way to do so incrementally). Of course, I could try something like initializing an initial lazy collection first and and yield the collection holding the desired values by applying the ressource-critical computations with map or so, but often I just simply do not know the exact size of the final collection a priori to initial that lazy collection.
Maybe you could help me by giving me hints or explanations on how to improve following code as an example, which splits a FASTA (definition below) formatted file into two separate files according to the rule that odd sequence pairs belong to one file and even ones to aother one ("separation of strands"). The "most" straight-forward way to do so would be in a imperative way by looping through the lines and printing into the corresponding files via open file streams (and this of course works excellent). However, I just don't enjoy the style of reassigning to variables holding header and sequences, thus the following example code uses (tail-)recursion, and I would appreciate to have found a way to maintain a similar design without running into ressource problems!
The example works perfectly for small files, but already with files at around ~500mb the code will fail with the standard JVM setups. I do want to process files of "arbitray" size, say 10-20gb or so.
val fileName = args(0)
val in = io.Source.fromFile(fileName) getLines
type itType = Iterator[String]
type sType = Stream[(String, String)]
def getFullSeqs(ite: itType) = {
//val metaChar = ">"
val HeadPatt = "(^>)(.+)" r
val SeqPatt = "([\\w\\W]+)" r
#annotation.tailrec
def rec(it: itType, out: sType = Stream[(String, String)]()): sType =
if (it hasNext) it next match {
case HeadPatt(_,header) =>
// introduce new header-sequence pair
rec(it, (header, "") #:: out)
case SeqPatt(seq) =>
val oldVal = out head
// concat subsequences
val newStream = (oldVal._1, oldVal._2 + seq) #:: out.tail
rec(it, newStream)
case _ =>
println("something went wrong my friend, oh oh oh!"); Stream[(String, String)]()
} else out
rec(ite)
}
def printStrands(seqs: sType) {
import java.io.PrintWriter
import java.io.File
def printStrand(seqse: sType, strand: Int) {
// only use sequences of one strand
val indices = List.tabulate(seqs.size/2)(_*2 + strand - 1).view
val p = new PrintWriter(new File(fileName + "." + strand))
indices foreach { i =>
p.print(">" + seqse(i)._1 + "\n" + seqse(i)._2 + "\n")
}; p.close
println("Done bro!")
}
List(1,2).par foreach (s => printStrand(seqs, s))
}
printStrands(getFullSeqs(in))
Three questions arise for me:
A) Let's assume one needs to maintain a large data structure obtained by processing the initial iterator you get from getLines like in my getFullSeqs method (note the different size of in and the output of getFullSeqs), because transformations on the whole(!) data is required repeatedly, because one does not know which part of the data one will require at any step. My example might not be the best, but how to do so? Is it possible at all??
B) What when the desired data structure is not inherently lazy, say one would like to store the (header -> sequence) pairs into a Map()? Would you wrap it in a lazy collection?
C) My implementation of constructing the stream might reverse the order of the inputted lines. When calling reverse, all elements will be evaluated (in my code, they already are, so this is the actual problem). Is there any way to post-process "from behind" in a lazy fashion? I know of reverseIterator, but is this already the solution, or will this not actually evaluate all elements first, too (as I would need to call it on a list)? One could construct the stream with newVal #:: rec(...), but I would lose tail-recursion then, wouldn't I?
So what I basically need is to add elements to a collection, which are not evaluated by the process of adding. So lazy val elem = "test"; elem :: lazyCollection is not what I am looking for.
EDIT: I have also tried using by-name parameter for the stream argument in rec .
Thank you so much for your attention and time, I really appreciate any help (again :) ).
/////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
FASTA is defined as a sequential set of sequences delimited by a single header line. A header is defined as a line starting with ">". Every line below the header is called part of the sequence associated with the header. A sequence ends when a new header is present. Every header is unique. Example:
>HEADER1
abcdefg
>HEADER2
hijklmn
opqrstu
>HEADER3
vwxyz
>HEADER4
zyxwv
Thus, sequence 2 is twice as big as seq 1. My program would split that file into a file A containing
>HEADER1
abcdefg
>HEADER3
vwxyz
and a second file B containing
>HEADER2
hijklmn
opqrstu
>HEADER4
zyxwv
The input file is assumed to consist of an even number of header-sequence pairs.
The key to working with really large data structures is to hold in memory only that which is critical to perform whatever operation you need. So, in your case, that's
Your input file
Your two output files
The current line of text
and that's it. In some cases you can need to store information such as how long a sequence is; in such events, you build the data structures in a first pass and use them on a second pass. Let's suppose, for example, that you decide that you want to write three files: one for even records, one for odd, and one for entries where the total length is less than 300 nucleotides. You would do something like this (warning--it compiles but I never ran it, so it may not actually work):
final def findSizes(
data: Iterator[String], sz: Map[String,Long] = Map(),
currentName: String = "", currentSize: Long = 0
): Map[String,Long] = {
def currentMap = if (currentName != "") sz + (currentName->currentSize) else sz
if (!data.hasNext) currentMap
else {
val s = data.next
if (s(0) == '>') findSizes(data, currentMap, s, 0)
else findSizes(data, sz, currentName, currentSize + s.length)
}
}
Then, for processing, you use that map and pass through again:
import java.io._
final def writeFiles(
source: Iterator[String], targets: Array[PrintWriter],
sizes: Map[String,Long], count: Int = -1, which: Int = 0
) {
if (!source.hasNext) targets.foreach(_.close)
else {
val s = source.next
if (s(0) == '>') {
val w = if (sizes.get(s).exists(_ < 300)) 2 else (count+1)%2
targets(w).println(s)
writeFiles(source, targets, sizes, count+1, w)
}
else {
targets(which).println(s)
writeFiles(source, targets, sizes, count, which)
}
}
}
You then use Source.fromFile(f).getLines() twice to create your iterators, and you're all set. Edit: in some sense this is the key step, because this is your "lazy" collection. However, it's not important just because it doesn't read all memory in immediately ("lazy"), but because it doesn't store any previous strings either!
More generally, Scala can't help you that much from thinking carefully about what information you need to have in memory and what you can fetch off disk as needed. Lazy evaluation can sometimes help, but there's no magic formula because you can easily express the requirement to have all your data in memory in a lazy way. Scala can't interpret your commands to access memory as, secretly, instructions to fetch stuff off the disk instead. (Well, not unless you write a library to cache results from disk which does exactly that.)
One could construct the stream with newVal #:: rec(...), but I would
lose tail-recursion then, wouldn't I?
Actually, no.
So, here's the thing... with your present tail recursion, you fill ALL of the Stream with values. Yes, Stream is lazy, but you are computing all of the elements, stripping it of any laziness.
Now say you do newVal #:: rec(...). Would you lose tail recursion? No. Why? Because you are not recursing. How come? Well, Stream is lazy, so it won't evaluate rec(...).
And that's the beauty of it. Once you do it that way, getFullSeqs returns on the first interaction, and only compute the "recursion" when printStrands asks for it. Unfortunately, that won't work as is...
The problem is that you are constantly modifying the Stream -- that's not how you use a Stream. With Stream, you always append to it. Don't keep "rewriting" the Stream.
Now, there are three other problems I could readily identify with printStrands. First, it calls size on seqs, which will cause the whole Stream to be processed, losing lazyness. Never call size on a Stream. Second, you call apply on seqse, accessing it by index. Never call apply on a Stream (or List) -- that's highly inefficient. It's O(n), which makes your inner loop O(n^2) -- yes, quadratic on the number of headers in the input file! Finally, printStrands keeps a reference to seqs throughout the execution of printStrand, preventing processing elements from being garbage collected.
So, here's a first approximation:
def inputStreams(fileName: String): (Stream[String], Stream[String]) = {
val in = (io.Source fromFile fileName).getLines.toStream
val SeqPatt = "^[^>]".r
def demultiplex(s: Stream[String], skip: Boolean): Stream[String] = {
if (s.isEmpty) Stream.empty
else if (skip) demultiplex(s.tail dropWhile (SeqPatt findFirstIn _ nonEmpty), skip = false)
else s.head #:: (s.tail takeWhile (SeqPatt findFirstIn _ nonEmpty)) #::: demultiplex(s.tail dropWhile (SeqPatt findFirstIn _ nonEmpty), skip = true)
}
(demultiplex(in, skip = false), demultiplex(in, skip = true))
}
The problem with the above, and I'm showing that code just to further guide in the issues of lazyness, is that the instant you do this:
val (a, b) = inputStreams(fileName)
You'll keep a reference to the head of both streams, which prevents garbage collecting them. You can't keep a reference to them, so you have to consume them as soon as you get them, without ever storing them in a "val" or "lazy val". A "var" might do, but it would be tricky to handle. So let's try this instead:
def inputStreams(fileName: String): Vector[Stream[String]] = {
val in = (io.Source fromFile fileName).getLines.toStream
val SeqPatt = "^[^>]".r
def demultiplex(s: Stream[String], skip: Boolean): Stream[String] = {
if (s.isEmpty) Stream.empty
else if (skip) demultiplex(s.tail dropWhile (SeqPatt findFirstIn _ nonEmpty), skip = false)
else s.head #:: (s.tail takeWhile (SeqPatt findFirstIn _ nonEmpty)) #::: demultiplex(s.tail dropWhile (SeqPatt findFirstIn _ nonEmpty), skip = true)
}
Vector(demultiplex(in, skip = false), demultiplex(in, skip = true))
}
inputStreams(fileName).zipWithIndex.par.foreach {
case (stream, strand) =>
val p = new PrintWriter(new File("FASTA" + "." + strand))
stream foreach p.println
p.close
}
That still doesn't work, because stream inside inputStreams works as a reference, keeping the whole stream in memory even while they are printed.
So, having failed again, what do I recommend? Keep it simple.
def in = (scala.io.Source fromFile fileName).getLines.toStream
def inputStream(in: Stream[String], strand: Int = 1): Stream[(String, Int)] = {
if (in.isEmpty) Stream.empty
else if (in.head startsWith ">") (in.head, 1 - strand) #:: inputStream(in.tail, 1 - strand)
else (in.head, strand) #:: inputStream(in.tail, strand)
}
val printers = Array.tabulate(2)(i => new PrintWriter(new File("FASTA" + "." + i)))
inputStream(in) foreach {
case (line, strand) => printers(strand) println line
}
printers foreach (_.close)
Now this won't keep anymore in memory than necessary. I still think it's too complex, however. This can be done more easily like this:
def in = (scala.io.Source fromFile fileName).getLines
val printers = Array.tabulate(2)(i => new PrintWriter(new File("FASTA" + "." + i)))
def printStrands(in: Iterator[String], strand: Int = 1) {
if (in.hasNext) {
val next = in.next
if (next startsWith ">") {
printers(1 - strand).println(next)
printStrands(in, 1 - strand)
} else {
printers(strand).println(next)
printStrands(in, strand)
}
}
}
printStrands(in)
printers foreach (_.close)
Or just use a while loop instead of recursion.
Now, to the other questions:
B) It might make sense to do so while reading it, so that you do not have to keep two copies of the data: the Map and a Seq.
C) Don't reverse a Stream -- you'll lose all of its laziness.