I use '.md' to generate '(index).html' and '(refman*).rtf' documentation with doxygen 1.8.14.
The mathematical equation in '*.md' gives a correct equation in html output but not in the file 'refman.rtf'. The other theoretical parts like paragraph and other stuff work well between *.md and rtf output.
I guess *.rtf is not recognizing the equation part of the *.md document.
Does the RTF generation through doxygen read the *.md files?
Do I need to change any tag to make *.md work with rtf output?
Not only for markdown but also for "normal" doxygen input formulas do not work.
From the documentation:
Doxygen allows you to put LATEX formulas in the output (this works
only for the HTML and LATEX output, not for the RTF nor for the man
page output).
A workaround workflow, at the moment for non inline formulas, is to do something like:
Create an image with the formula e.g in a dummy doxygen run where one does not use MATHJAX, this will result in an image with a name like: 'form_0.png'.
In the code one has to place an if construct like:
\if rtf_run
\image rtf form_0.png
\else
\f... with the formula
\endif
One now has to run doxygen twice:
once for the output without rtf, i.e. without setting rtf_run in ENABLED_SECTIONS
once for rtf output by setting rtf_run in ENABLED_SECTIONS
EDIT June 5, 2018: I've just pushed a proposed patch to github pull request 756. Here the formulas are rendered as png images and included in the RTF documentation.
EDIT: 2018/06/10: The push request has been integrated in the master version on github.
Is there any way to render LaTex in README.md in a GitHub repository? I've googled it and searched on stack overflow but none of the related answers seems feasible.
For short expresions and not so fancy math you could use the inline HTML to get your latex rendered math on codecogs and then embed the resulting image. Here an example:
- <img src="https://latex.codecogs.com/gif.latex?O_t=\text { Onset event at time bin } t " />
- <img src="https://latex.codecogs.com/gif.latex?s=\text { sensor reading } " />
- <img src="https://latex.codecogs.com/gif.latex?P(s | O_t )=\text { Probability of a sensor reading value when sleep onset is observed at a time bin } t " />
Which should result in something like the next
Update: This works great in eclipse but not in github unfortunately. The only work around is the next:
Take your latex equation and go to http://www.codecogs.com/latex/eqneditor.php, at the bottom of the area where your equation appears displayed there is a tiny dropdown menu, pick URL encoded and then paste that in your github markdown in the next way:
I upload repositories with equations to Gitlab because it has native support for LaTeX in .md files:
```math
SE = \frac{\sigma}{\sqrt{n}}
```
The syntax for inline latex is $`\sqrt{2}`$.
Gitlab renders equations with JavaScript in the browser instead of showing images, which improves the quality of equations.
More info here.
Let's hope Github will implement this as well in the future.
My trick is to use the Jupyter Notebook.
GitHub has built-in support for rendering .ipynb files. You can write inline and display LaTeX code in the notebook and GitHub will render it for you.
Here's a sample notebook file: https://gist.github.com/cyhsutw/d5983d166fb70ff651f027b2aa56ee4e
Readme2Tex
I've been working on a script that automates most of the cruft out of getting LaTeX typeset nicely into Github-flavored markdown: https://github.com/leegao/readme2tex
There are a few challenges with rendering LaTeX for Github. First, Github-flavored markdown strips most tags and most attributes. This means no Javascript based libraries (like Mathjax) nor any CSS styling.
The natural solution then seems to be to embed images of precompiled equations. However, you'll soon realize that LaTeX does more than just turning dollar-sign enclosed formulas into images.
Simply embedding images from online compilers gives this really unnatural look to your document. In fact, I would argue that it's even more readable in your everyday x^2 mathematical slang than jumpy .
I believe that making sure that your documents are typeset in a natural and readable way is important. This is why I wrote a script that, beyond compiling formulas into images, also ensures that the resulting image is properly fitted and aligned to the rest of the text.
For example, here is an excerpt from a .md file regarding some enumerative properties of regular expressions typeset using readme2tex:
As you might expect, the set of equations at the top is specified by just starting the corresponding align* environment
**Theorem**: The translation $[\![e]\!]$ given by
\begin{align*}
...
\end{align*}
...
Notice that while inline equations ($...$) run with the text, display equations (those that are delimited by \begin{ENV}...\end{ENV} or $$...$$) are centered. This makes it easy for people who are already accustomed to LaTeX to keep being productive.
If this sounds like something that could help, make sure to check it out. https://github.com/leegao/readme2tex
Since May 2022, this has been officially supported:
Inline:
Where $x = 0$, evaluate $x + 1$
Blocks:
Where
$$x = 0$$
Evaluate
$$x + 1$$
One can also use this online editor: https://www.codecogs.com/latex/eqneditor.php which generates SVG files on the fly. You can put a link in your document like this:
 which results in:
.
I test some solution proposed by others and I would like to recommend TeXify created and proposed in comment by agurodriguez and further described by Tom Hale - I would like develop his answer and give some reason why this is very good solution:
TeXify is wrapper of Readme2Tex (mention in Lee answer). To use Readme2Tex you must install a lot of software in your local machine (python, latex, ...) - but TeXify is github plugin so you don't need to install anything in your local machine - you only need to online installation that plugin in you github account by pressing one button and choose repositories for which TeXify will have read/write access to parse your tex formulas and generate pictures.
When in your repository you create or update *.tex.md file, the TeXify will detect changes and generate *.md file where latex formulas will be exchanged by its pictures saved in tex directory in your repo. So if you create README.tex.md file then TeXify will generate README.md with pictures instead tex formulas. So parsing tex formulas and generate documentation is done automagically on each commit&push :)
Because all your formulas are changed into pictures in tex directory and README.md file use links to that pictures, you can even uninstall TeXify and all your old documentation will still works :). The tex directory and *.tex.md files will stay on repository so you have access to your original latex formulas and pictures (you can also safely store in tex directory your other documentation pictures "made by hand" - TeXify will not touch them).
You can use equations latex syntax directly in README.tex.md file (without loosing .md markdown syntax) which is very handy. Julii in his answer proposed to use special links (with formulas) to external service e.g . http://latex.codecogs.com/gif.latex?s%3D%5Ctext%20%7B%20sensor%20reading%20%7D which is good however has some drawbacks: the formulas in links are not easy (handy) to read and update, and if there will be some problem with that third-party service your old documentation will stop work... In TeXify your old documentation will works always even if you uninstall that plugin (because all your pictures generated from latex formulas are stay in repo in tex directory).
The Yuchao Jiang in his answer, proposed to use Jupyter Notebook which is also nice however have som drawbacks: you cannot use formulas directly in README.md file, you need to make link there to other file *.ipynb in your repo which contains latex (MathJax) formulas. The file *.ipynb format is JSON which is not handy to maintain (e.g. Gist don't show detailed error with line number in *.ipynb file when you forgot to put comma in proper place...).
Here is link to some of my repo where I use TeXify for which documentation was generated from README.tex.md file.
Update
Today 2020.12.13 I realised that TeXify plugin stop working - even after reinstallation :(
For automatic conversion upon push to GitHub, take a look at the TeXify app:
GitHub App that looks in your pushes for files with extension *.tex.md and renders it's TeX expressions as SVG images
How it works (from the source repository):
Whenever you push TeXify will run and seach for *.tex.md files in your last commit. For each one of those it'll run readme2tex which will take LaTeX expressions enclosed between dollar signs, convert it to plain SVG images, and then save the output into a .md extension file (That means that a file named README.tex.md will be processed and the output will be saved as README.md). After that, the output file and the new SVG images are then commited and pushed back to your repo.
I just published a new version of xhub, a browser extension that renders LaTeX (and other things) in GitHub pages.
Cons:
You have to install the extension once.
Pros:
No need to set up anything.
Just write Markdown with math
Display math:
```math
e^{i\pi} + 1 = 0
```
and line math $`a^2 + b^2 = c^2`$.
(Syntax like on GitLab.)
Works on light and dark background. (Math has text-color)
You can copy-and-paste the math just like text
As an example, check out this GitHub README:
You can get a continuous integration service (e.g. Travis CI) to render LaTeX and commit results to github. CI will deploy a "cloud" worker after each new commit. The worker compiles your document into pdf and either cuses ImageMagick to convert it to an image or uses PanDoc to attempt LaTeX->HTML conversion where success may vary depending on your document. Worker then commits image or html to your repository from where it can be shown in your readme.
Sample TravisCi config that builds a PDF, converts it to a PNG and commits it to a static location in your repo is pasted below. You would need to add a line that fetches pdfconverts PDF to an image
sudo: required
dist: trusty
os: linux
language: generic
services: docker
env:
global:
- GIT_NAME: Travis CI
- GIT_EMAIL: builds#travis-ci.org
- TRAVIS_REPO_SLUG: your-github-username/your-repo
- GIT_BRANCH: master
# I recommend storing your GitHub Access token as a secret key in a Travis CI environment variable, for example $GH_TOKEN.
- secure: ${GH_TOKEN}
script:
- wget https://raw.githubusercontent.com/blang/latex-docker/master/latexdockercmd.sh
- chmod +x latexdockercmd.sh
- "./latexdockercmd.sh latexmk -cd -f -interaction=batchmode -pdf yourdocument.tex -outdir=$TRAVIS_BUILD_DIR/"
- cd $TRAVIS_BUILD_DIR
- convert -density 300 -quality 90 yourdocument.pdf yourdocument.png
- git checkout --orphan $TRAVIS_BRANCH-pdf
- git rm -rf .
- git add -f yourdoc*.png
- git -c user.name='travis' -c user.email='travis' commit -m "updated PDF"
# note we are again using GitHub access key stored in the CI environment variable
- git push -q -f https://your-github-username:$GH_TOKEN#github.com/$TRAVIS_REPO_SLUG $TRAVIS_BRANCH-pdf
notifications:
email: false
This Travis Ci configuration launches a Ubuntu worker downloads a latex docker image, compiles your document to pdf and commits it to a branch called branchanme-pdf.
For more examples see this github repo and its accompanying sx discussion, PanDoc example,
https://dfm.io/posts/travis-latex/, and this post on Medium.
I have been looking around and found that this answer in another question works best for me. i.e. use githubcontent math renderer, e.g. to display:
Use this link
Beware of the latex needs to be url encoded, but otherwise work quite well for me.
If you are having issues with https://www.codecogs.com/latex/eqneditor.php, I found that https://alexanderrodin.com/github-latex-markdown/ worked for me. It generates the Markdown code you need, so you just cut and paste it into your README.md document.
You may also take a look on my tool latexMarkdown2Markdown which convert LaTeX to SVG and generate a table of content with chapter numbering.
Good news!
According to this blogpost, now GitHub supports Mathjax in readme files.
You can use in-line LaTeX inspired syntax using $ delimiters, or in-blocks using $$ delimiters.
Writing inline expressions:
This sentence uses $ delimiters to show math inline:
$\sqrt{3x-1}+(1+x)^2$
Writing expressions as blocks:
The Cauchy-Schwarz Inequality
$$\left( \sum_{k=1}^n a_k b_k \right)^2 \leq \left( \sum_{k=1}^n a_k^2
\right) \left( \sum_{k=1}^n b_k^2 \right)$$
Source: https://docs.github.com/en/get-started/writing-on-github/working-with-advanced-formatting/writing-mathematical-expressions
You can use markdowns, e.g.
=\beta_0&space;+&space;\beta_1&space;x&space;+&space;u)
Code can be typed here: https://www.codecogs.com/latex/eqneditor.php.
Edit: As germanium pointed out, it does not work for README.md but other git pages though no explanation is available.
My quick solution is this
step 1. Add latex to your .md file
$$x=\sqrt{2}$$
Note: math eqns must be in $$...$$ or \\(... \\).
step 2. Add the following to your scripts.html or theme file (append this code at the end)
<script type="text/javascript" async
src="https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-MML-AM_CHTML">
Done!. See your eq. by loading the page.
After investigating, I've found mathjax can do this. But when I write some example in my markdown file, it doesn't show the correct equations:
I have added this in the head of markdown file:
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=default"></script>
And type the mathjax statement:
\(E=mc^2\)，$$x_{1,2} = \frac{-b \pm \sqrt{b^2-4ac}}{2b}.$$
But github shows nothing for the math symbols! Please help me, thanks!
Tell me how to show math symbols in github markdown pages.
But github show nothing for the math symbols! please help me, thanks!
GitHub markdown parsing is performed by the SunDown (ex libUpSkirt) library.
The motto of the library is "Standards compliant, fast, secure markdown processing library in C". The important word being "secure" there, considering your question :).
Indeed, allowing javascript to be executed would be a bit off of the MarkDown standard text-to-HTML contract.
Moreover, everything that looks like a HTML tag is either escaped or stripped out.
Tell me how to show math symbols in general github markdown.
Your best bet would be to find a website similar to yuml.me which can generate on-the-fly images from by parsing the provided URL querystring.
Update
I've found some sites providing users with such service: codedogs.com (no longer seems to support embedding) or iTex2Img.
You may want to try them out. Of course, others may exist and some Google-fu will help you find them.
given the following markdown syntax
it will display the following image
Note: In order for the image to be properly displayed, you'll have to ensure the querystring part of the url is percent encoded. You can easily find online tools to help you with that task, such as www.url-encode-decode.com
Markdown supports inline HTML. Inline HTML can be used for both quick and simple inline equations and, with and external tool, more complex rendering.
Quick and Simple Inline
For quick and simple inline items use HTML ampersand entity codes. An example that combines this idea with subscript text in markdown is: hθ(x) = θo x + θ1x, the code for which follows.
h<sub>θ</sub>(x) = θ<sub>o</sub> x + θ<sub>1</sub>x
HTML ampersand entity codes for common math symbols can be found here. Codes for Greek letters here. An extensive list html entity codes to Unicode characters can be found here.
While this approach has limitations it works in practically all markdown and does not require any external libraries.
Complex Scalable Inline Rendering with LaTeX and Codecogs
If your needs are greater use an external LaTeX renderer like CodeCogs. Create an equation with CodeCogs editor. Choose svg for rendering and HTML for the embed code. Svg renders well on resize. HTML allows LaTeX to be easily read when you are looking at the source. Copy the embed code from the bottom of the page and paste it into your markdown.
<img src="https://latex.codecogs.com/svg.latex?\Large&space;x=\frac{-b\pm\sqrt{b^2-4ac}}{2a}" title="\Large x=\frac{-b\pm\sqrt{b^2-4ac}}{2a}" />
Expressed in markdown becomes
This combines this answer and this answer.
GitHub support only somtimes worked using the above raw html syntax for readable LaTeX for me. If the above does not work for you another option is to instead choose URL Encoded rendering and use that output to manually create a link like:
This manually incorporates LaTex in the alt image text and uses an encoded URL for rendering on GitHub.
Multi-line Rendering
If you need multi-line rendering check out this answer.
It ’s 2020 now, let me summarize the progress of the mathematical formula rendering support of source code repository hosts.
GitHub & Bitbucket
GitHub and Bitbucket still do not support the rendering of mathematical formulas, whether it is the default delimiters or other.
Bitbucket Cloud / BCLOUD-11192 -- Add LaTeX Support in MarkDown Documents (BB-12552)
GitHub / markup -- Rendering math equations
GitHub / markup -- Support latex
GitHub Community Forum -- [FEATURE REQUEST] LaTeX Math in Markdown
talk.commonmark.org -- Can math formula added to the markdown
GitHub has hardly made any substantial progress in recent years.
GitLab
GitLab is already supported, but not the most common way. It uses its own delimiter.
This math is inline $`a^2+b^2=c^2`$.
This is on a separate line
```math
a^2+b^2=c^2
```
GitLab Flavored Markdown -- Math
Who supports the universal delimiters?
A Markdown parser used by Hugo
Other ways to render
Use web api to render according to A hack for showing LaTeX formulas in GitHub markdown, you can even write jupyter notebook.
readme2tex
It is officially supported since May 2022:
Render mathematical expressions in Markdown
You can now use LaTeX style syntax to render math expressions within Markdown inline (using $ delimiters) or in blocks (using $$ delimiters).
Writing expressions as blocks
To add math as a multiline block displayed separately from surrounding text, start a new line and delimit the expression with two dollar symbols $$.
**The Cauchy-Schwarz Inequality**
$$\left( \sum_{k=1}^n a_k b_k \right)^2 \leq \left( \sum_{k=1}^n a_k^2 \right) \left( \sum_{k=1}^n b_k^2 \right)$$
Writing inline expressions
To include a math expression inline with your text, delimit the expression with a dollar symbol $.
This sentence uses `$` delimiters to show math inline: $\sqrt{3x-1}+(1+x)^2$
GitHub's math rendering capability uses MathJax; an open source, JavaScript-based display engine.
MathJax supports a wide range of LaTeX macros and a number of useful accessibility extensions.
For more information, see the MathJax documentation and the MathJax Accessibility Extensions documentation.
Some users have previously used a workaround to generate images of mathematical expressions through API requests.
Images generated this way will remain viewable, but this technique will no longer work.
Going forward, expressions should be written directly in Markdown using LaTeX syntax as described above.
For more information about authoring content with advanced formatting, see Working with advanced formatting in the GitHub documentation.
This is still beta, and criticised.
See "Math on GitHub: The Good, the Bad and the Ugly" from Nico Schlömer.
The syntax introduces:
Competing Markdown and math renderer
A math block hard to interpret
As noted by brc-dd in the comments:
June 2022:
Fenced block syntax for mathematical expressions
Users can now delineate mathematical expressions using ```math fenced code block syntax in addition to the already supported delimiters.
Two dollar sign $$ delimiters are not required if this method is used.
**Here is some math!**
```math
\sqrt{3}
.```
becomes:
Read more about working with advanced formatting.
Another possibility is to rely on GitHub's own notebook renderer. This even works right here in SO.
To render x_{1,2} = \frac{-b \pm \sqrt{b^2-4ac}}{2b} use the following HTML img tag:
<img src="https://render.githubusercontent.com/render/math?math=x_{1,2} = \frac{-b \pm \sqrt{b^2-4ac}}{2b}">
Live Demo:
What's great about this approach is that you can edit your formula directly in Markdown and the preview will update accordingly.
You can try it out by editing this answer. (Just throw away your edits if they don't add to the answer ;))
Source: https://gist.github.com/a-rodin/fef3f543412d6e1ec5b6cf55bf197d7b
One other work-around is to use jupyter notebooks and use the markdown mode in cells to render equations.
Basic stuff seems to work perfectly, like centered equations
\begin{equation}
...
\end{equation}
or inline equations
$ \sum_{\forall i}{x_i^{2}} $
Although, one of the functions that I really wanted did not render at all in github was \mbox{}, which was a bummer. But, all in all this has been the most successful way of rendering equations on github.
If just wanted to show math in the browser for yourself, you could try the Chrome extension GitHub with MathJax. It's quite convenient.
While GitHub won't interpret the MathJax formulas, you can automatically generate a new Markdown document with the formulae replaced by images.
I suggest you look at the GitHub app TeXify:
GitHub App that looks in your pushes for files with extension *.tex.md and renders it's TeX expressions as SVG images
How it works (from the source repository):
Whenever you push TeXify will run and seach for *.tex.md files in your last commit. For each one of those it'll run readme2tex which will take LaTeX expressions enclosed between dollar signs, convert it to plain SVG images, and then save the output into a .md extension file (That means that a file named README.tex.md will be processed and the output will be saved as README.md). After that, the output file and the new SVG images are then commited and pushed back to your repo.
I use the below mentioned process to convert equations to markdown. This works very well for me. Its very simple!!
Let's say, I want to represent matrix multiplication equation
Step 1:
Get the script for your formulae from here - https://csrgxtu.github.io/2015/03/20/Writing-Mathematic-Fomulars-in-Markdown/
My example: I wanted to represent Z(i,j)=X(i,k) * Y(k, j); k=1 to n into a summation formulae.
Referencing the website, the script needed was => Z_i_j=\sum_{k=1}^{10} X_i_k * Y_k_j
Step 2:
Use URL encoder - https://www.urlencoder.org/ to convert the script to a valid url
My example:
Step 3:
Use this website to generate the image by copy-pasting the output from Step 2 in the "eq" request parameter - http://www.sciweavers.org/tex2img.php?eq=<b><i>paste-output-here</i></b>&bc=White&fc=Black&im=jpg&fs=12&ff=arev&edit=
- My example:
http://www.sciweavers.org/tex2img.php?eq=Z_i_j=\sum_{k=1}^{10}%20X_i_k%20*%20Y_k_j&bc=White&fc=Black&im=jpg&fs=12&ff=arev&edit=
Step 4:
Reference image using markdown syntax - 
- Copy this in your markdown and you are good to go:
Image below is the output of markdown. Hurray!!
I just released a little Chrome extension, xhub, that lets you use LaTeX math (and more) in GitHub pages.
Pros:
You don't have to set up anything in your repo, just use math in your Markdown (sytax from GitLab):
Some display math:
```math
e^{i\pi} + 1 = 0
```
and some inline math, $`a^2 + b^2 = c^2`$.
It works on light and dark backgrounds alike.
You can copy-and-paste the math
Cons:
You have to install a browser extension once.
There is good solution for your problem - use TeXify github plugin (mentioned by Tom Hale answer - but I developed his answer in given link below) - more details about this github plugin and explanation why this is good approach you can find in that answer.
I used the following in the head of mark down file
<script type="text/javascript" async
src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2/MathJax.js?
config=TeX-MML-AM_CHTML"
</script>
Then typed the following mathjax statement
$$x_{1,2} = \frac{-b \pm \sqrt{b^2-4ac}}{2b}.$$
It worked for me
A "quick and dirty" solution is to maintain a standard .md file using standard TeX equations, e.g. _README.md.
When you are satisfied, pass the entire file through Pandoc to convert from standard Markdown to Markdown (Github flavour), and copy the output to README.md.
You can do this online for a quick turnaround, or install/configure Pandoc locally.
Mathcha is a sophisticated mathematics editor, but it can be used to render individual equations and save them as pure html, which you can then add to your documents as inline html OR you can save as SVG and insert as an image. https://www.mathcha.io/
You can embed your LaTeX in an image URL rendered by render.githubusercontent.com such as this one:
<img src="https://render.githubusercontent.com/render/math?math={x + y}">
which will render like this:
Which you'll notice is missing the + sign. To fix that you can URL encode the plus sigh as %2b or URL encode the entire equation, which will render like so:
Unfortunately this will always render in black, so you'll want to use this GitHub specific trick to render white text for users using dark mode and black text to users using light mode, by including the equation once with the #gh-light-mode-only and again with the LaTeX comand \color{white} and the #gh-dark-mode-only tag:
<img src="https://render.githubusercontent.com/render/math?math={x - y}#gh-light-mode-only">
<img src="https://render.githubusercontent.com/render/math?math={\color{white}x - y}#gh-dark-mode-only">
which will display this to light mode users:
and display this to dark mode users:
Now since May 2022, Github accept LATEX directly into Markdown, the only thing to do is to put the LATEX code inside $$$$ on your markdown
One more thing, you can colorize the math using the {\color{nameColor}text} on markdown
$${\color{red}\sum\limits_{\color{lightblue}i=0}^{\color{orange}n} {\color{pink}i}} = \frac{\color{pink}n!}{\color{lightblue}k!(n-k)!}$$
Example in a picture:
$$\sum\limits_{i=0}^n i^2$$ create the sum:
Regarding tex→image conversion, the tool LaTeXiT produces much higher quality output. I believe it is standard in most TeX distributions but you can certainly find it online if you don't already have it. All you need to do is put it in the TeX, drag the image to your desktop, then drag from your desktop to an image hosting site (I use imgur).
TeXify is no longer working. Check my repo readme2tex-action on how to create Github actions.
Add action.yml file to your repo at .github/workflows/action.yml.
Change branch main name if it is necessary.