I have got a nx3 adjacency matrix that contains nodes in the first two dimension and the correspondant weight in the third dimension. I want to filter the matrix for specific thresholds (for nodes indexing). For example, I want to keep the adjacency matrix for nodes smaller than 10.000, 20.000, etc. Which is the most efficient way to do so in matlab? I tried to do the following, find the index which correspond to nodes:
counter = 1;
for i=1: size(graph4, 1)
if (graph4(i,1) >30000) | (graph4(i,2) >30000)
bucket(counter) = i;
counter=counter+1;
end
end
Suppose the adjacency matrix is A as given below:
A =
8 1 6
3 5 7
4 9 2
11 4 9
6 8 10
7 12 5
17 10 15
12 14 16
13 18 11
If you want both column 1 and column 2 to be less than a value, you can do:
value = 10;
T = A(A(:,1) < value & A(:,2) < value, :)
T =
8 1 6
3 5 7
4 9 2
6 8 10
The following line seems to give the same results as your sample code (but it doesn't seem like it fits your description.
value = 10000;
bucket = find((A(:,1)>value) | A(:,2)>value)
I guess you made a mistake and want to increment the counter above the bucket-line and initialize it as counter = 0 before the loop? As it is now, it will be one more than the number of elements in the bucket-list.
Related
I would like to sum specific columns of each row in a matrix using a for loop. Below I have included a simplified version of my problem. As of right now, I am calculating the column sums individually, but this is not effective as my actual problem has multiple matrices (data sets).
a = [1 2 3 4 5 6; 4 5 6 7 8 9];
b = [2 2 3 4 4 6; 3 3 3 4 5 5];
% Repeat the 3 lines of code below for row 2 of matrix a
% Repeat the entire process for matrix b
c = sum(a(1,1:3)); % Sum columns 1:3 of row 1
d = sum(a(1,4:6)); % Sum columns 4:6 of row 1
e = sum(a(1,:)); % Sum all columns of row 1
I would like to know how to create a for loop that automatically loops through and sums the specific columns of each row for each matrix that I have.
Thank you.
Here is a solution that you don't need to use for loop.
Assuming that you have a matrix a of size 2x12, and you want to do the row sums every 4 columns, then you can use reshape() and squeeze() to get the final result:
k = 4;
a = [1:12
13:24];
% a =
% 1 2 3 4 5 6 7 8 9 10 11 12
% 13 14 15 16 17 18 19 20 21 22 23 24
s = squeeze(sum(reshape(a,size(a,1),k,[]),2));
and you will get
s =
10 26 42
58 74 90
I have a 4x8 matrix which I want to select two different columns of it then derive dot product of them and then divide to norm values of that selected columns, and then repeat this for all possible two different columns and save the vectors in a new matrix. can anyone provide me a matlab code for this purpose?
The code which I supposed to give me the output is:
A=[1 2 3 4 5 6 7 8;1 2 3 4 5 6 7 8;1 2 3 4 5 6 7 8;1 2 3 4 5 6 7 8;];
for i=1:8
for j=1:7
B(:,i)=(A(:,i).*A(:,j+1))/(norm(A(:,i))*norm(A(:,j+1)));
end
end
I would approach this a different way. First, create two matrices where the corresponding columns of each one correspond to a unique pair of columns from your matrix.
Easiest way I can think of is to create all possible combinations of pairs, and eliminate the duplicates. You can do this by creating a meshgrid of values where the outputs X and Y give you a pairing of each pair of vectors and only selecting out the lower triangular part of each matrix offsetting by 1 to get the main diagonal just one below the diagonal.... so do this:
num_columns = size(A,2);
[X,Y] = meshgrid(1:num_columns);
X = X(tril(ones(num_columns),-1)==1); Y = Y(tril(ones(num_columns),-1)==1);
In your case, here's what the grid of coordinates looks like:
>> [X,Y] = meshgrid(1:num_columns)
X =
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
1 2 3 4 5 6 7 8
Y =
1 1 1 1 1 1 1 1
2 2 2 2 2 2 2 2
3 3 3 3 3 3 3 3
4 4 4 4 4 4 4 4
5 5 5 5 5 5 5 5
6 6 6 6 6 6 6 6
7 7 7 7 7 7 7 7
8 8 8 8 8 8 8 8
As you can see, if we select out the lower triangular part of each matrix excluding the diagonal, you will get all combinations of pairs that are unique, which is what I did in the last parts of the code. Selecting the lower-part is important because by doing this, MATLAB selects out values column-wise, and traversing the columns of the lower-triangular part of each matrix gives you the exact orderings of each pair of columns in the right order (i.e. 1-2, 1-3, ..., 1-7, 2-3, 2-4, ..., etc.)
The point of all of this is that can then use X and Y to create two new matrices that contain the columns located at each pair of X and Y, then use dot to apply the dot product to each matrix column-wise. We also need to divide the dot product by the multiplication of the magnitudes of the two vectors respectively. You can't use MATLAB's built-in function norm for this because it will compute the matrix norm for matrices. As such, you have to sum over all of the rows for each column respectively for each of the two matrices then multiply both of the results element-wise then take the square root - this is the last step of the process:
matrix1 = A(:,X);
matrix2 = A(:,Y);
B = dot(matrix1, matrix2, 1) ./ sqrt(sum(matrix1.^2,1).*sum(matrix2.^2,1));
I get this for B:
>> B
B =
Columns 1 through 11
1 1 1 1 1 1 1 1 1 1 1
Columns 12 through 22
1 1 1 1 1 1 1 1 1 1 1
Columns 23 through 28
1 1 1 1 1 1
Well.. this isn't useful at all. Why is that? What you are actually doing is finding the cosine angle between two vectors, and since each vector is a scalar multiple of another, the angle that separates each vector is in fact 0, and the cosine of 0 is 1.
You should try this with different values of A so you can see for yourself that it works.
To make this code compatible for copying and pasting, here it is:
%// Define A here:
A = repmat(1:8, 4, 1);
%// Code to produce dot products here
num_columns = size(A,2);
[X,Y] = meshgrid(1:num_columns);
X = X(tril(ones(num_columns),-1)==1); Y = Y(tril(ones(num_columns),-1)==1);
matrix1 = A(:,X);
matrix2 = A(:,Y);
B = dot(matrix1, matrix2, 1) ./ sqrt(sum(matrix1.^2,1).*sum(matrix2.^2,1));
Minor Note
If you have a lot of columns in A, this may be very memory intensive. You can get your original code to work with loops, but you need to change what you're doing at each column.
You can do something like this:
num_columns = nchoosek(size(A,2),2);
B = zeros(1, num_columns);
counter = 1;
for ii = 1 : size(A,2)
for jj = ii+1 : size(A,2)
B(counter) = dot(A(:,ii), A(:,jj), 1) / (norm(A(:,ii))*norm(A(:,jj)));
counter = counter + 1;
end
end
Note that we can use norm because we're specifying vectors for each of the inputs into the function. We first preallocate a matrix B that will contain the dot products of all possible combinations. Then, we go through each pair of combinations - take note that the inner for loop starts from the outer most for loop index added with 1 so you don't look at any duplicates. We take the dot product of the corresponding columns referenced by positions ii and jj and store the results in B. I need an external counter so we can properly access the right slot to place our result in for each pair of columns.
How do I change the list of value to all 1? I need the top right to bottom left also end up with 1.
rc = input('Please enter a value for rc: ');
mat = ones(rc,rc);
for i = 1:rc
for j = 1:rc
mat(i,j) = (i-1)+(j-1);
end
end
final = mat
final(diag(final)) = 1 % this won't work?
Code for the original problem -
final(1:size(final,1)+1:end)=1
Explanation: As an example consider a 5x5 final matrix, the diagonal elements would have indices as (1,1), (2,2) .. (5,5). Convert these to linear indices - 1, 7 and so on till the very last element, which is exactly what 1:size(final,1)+1:end gets us.
Edit : If you would like to set the diagonal(from top right to bottom left elements) as 1, one approach would be -
final(fliplr(eye(size(final)))==1)=1
Explanation: In this case as well we can use linear indexing, but just for more readability and maybe a little fun, we can use logical indexing with a proper mask, which is being created with fliplr(eye(size(final)))==1.
But, if you care about performance, you can use linear indexing here as well, like this -
final(sub2ind(size(final),1:size(final,1),size(final,2):-1:1))=1
Explanation: Here we are creating the linear indices with the rows and columns indices of the elements to be set. The rows here would be - 1:size(final,1) and columns are size(final,2):-1:1. We feed these two to sub2ind to get us the linear indices that we can use to index into final and set them to 1.
If you would to squeeze out the max performance here, go with this raw version of sub2ind -
final([size(final,2)-1:-1:0]*size(final,1) + [1:size(final,1)])=1
All of the approaches specified so far are great methods for doing what you're asking.
However, I'd like to provide another viewpoint and something that I've noticed in your code, as well as an interesting property of this matrix that may or may not have been noticed. All of the anti-diagonal values in your matrix have values equal to rc - 1.
As such, if you want to set all of the anti-diagonal values to 1, you can cheat and simply find those values equal to rc-1 and set these to 1. In other words:
final(final == rc-1) = 1;
Minor note on efficiency
As a means of efficiency, you can do the same thing your two for loops are doing when constructing mat by using the hankel command:
mat = hankel(0:rc-1,rc-1:2*(rc-1))
How hankel works in this case is that the first row of the matrix is specified by the vector of 0:rc-1. After, each row that follows incrementally shifts values to the left and adds an increasing value of 1 to the right. This keeps going until you encounter the vector seen in the second argument, and at this point we stop. In other words, if we did:
mat = hankel(0:3,3:6)
This is what we get:
mat =
0 1 2 3
1 2 3 4
2 3 4 5
3 4 5 6
Therefore, by specifying rc = 5, this is the matrix I get with hankel, which is identical to what your code produces (before setting the anti-diagonal to 1):
mat =
0 1 2 3 4
1 2 3 4 5
2 3 4 5 6
3 4 5 6 7
4 5 6 7 8
Tying it all together
With hankel and the cheat that I mentioned, we can compute what you are asking in three lines of code - with the first line of code asking for the dimensions of the matrix:
rc = input('Please enter a value for rc: ');
mat = hankel(0:rc-1, rc-1:2*(rc-1));
mat(mat == rc-1) = 1;
mat contains your final matrix. Therefore, with rc = 5, this is the matrix I get:
mat =
0 1 2 3 1
1 2 3 1 5
2 3 1 5 6
3 1 5 6 7
1 5 6 7 8
Here's a simple method where I just add/subtract the appropriate matrices to end up with the right thing:
final=mat-diag(diag(mat-1))+fliplr(diag([2-rc zeros(1,rc-2) 2-rc]))
Here is one way to do it:
Say we have a the square matrix:
a = ones(5, 5)*5
a =
5 5 5 5 5
5 5 5 5 5
5 5 5 5 5
5 5 5 5 5
5 5 5 5 5
You can remove the diagonal, then create a diagonal list of ones to replace it:
a = a - fliplr(diag(diag(fliplr(a)))) + fliplr(diag(ones(length(a), 1)))
a =
5 5 5 5 1
5 5 5 1 5
5 5 1 5 5
5 1 5 5 5
1 5 5 5 5
The diag(ones(length(a), 1)) can be any vector, ie. 1->5:
a = a - fliplr(diag(diag(fliplr(a)))) + fliplr(diag(1:length(a)))
a =
5 5 5 5 1
5 5 5 2 5
5 5 3 5 5
5 4 5 5 5
5 5 5 5 5
I have a fairly large 2x2 matrix containing date and temperatures. There is a cluster of NaNs and incorrect data. I used find to get the index that contains the incorrect data. These indexes are stored in another variable. How do i remove the rows (date and value) corresponding to the indices?
Thanks.
fairly large 2x2 matrix makes little or no sense.
This is part from MATLAB documentation
You can delete rows and columns from a matrix by assigning the empty array [] to those rows or columns. Start with
A = magic(4)
A =
16 2 3 13
5 11 10 8
9 7 6 12
4 14 15 1
Then, delete the second column of A using
A(:, 2) = []
This changes matrix A to
A =
16 3 13
5 10 8
9 6 12
4 15 1
Also you can delete multiple rows/columns at once:
A([1 3],:)=[]
A =
5 10 8
4 15 1
I have matrix a <500 x 500> and matrix b <500 x 2>.
Matrix b contains two types of values which are row and column coordinates for matrix a. I would like to use the values in matrix b to to copy all the values that fall on the row and column coordinates of matrix a.
see example below
matrix a matrix b output
1 2 3 4 5 1 5 1 2 3 4 5
6 7 8 9 10 2 5 7 8 9 10
11 12 13 14 15 1 3 11 12 13
Because every row will have a different length you'll need to save the values into a cell array.
Something like this should work:
output = cell( size(b,1),1);
for i = 1:size(a,1)
output{i} = a(i, b(i,1):b(i,2) )
end