How to send data to command line after calling .sh file? - sh

I want to install Anaconda through EasyBuild. EasyBuild is a software to manage software installation on clusters. Anaconda can be installed with sh Anaconda.sh.
However, after running I have to accept the License agreement and give the installation location on the command line by entering <Enter>, yes <Enter>, path/where/to/install/ <Enter>.
Because this has to be installed automatically I want to do the accepting of terms and giving the install location in one line. I tried to do it like this:
sh Anaconda.sh < <(echo) >/dev/null < <(echo yes) >/dev/null \
< <(echo /apps/software/Anaconda/1.8.0-Linux-x86_64/) > test.txt
From the test.txt I can read that the first echo works as <Enter>, but I can't figure out how to accept the License agreement, as it sees it now as not sending yes:
Do you approve the license terms? [yes|no]
[no] >>> The license agreement wasn't approved, aborting installation.
How can I send the yes correctly to the script input?

Edit: Sorry, I missed the part about having to enter more then one thing. You can take a look at writing expect scripts. thegeekstuff.com/2010/10/expect-examples. You may need to install it however.
You could try piping with the following command: yes yes | sh Anaconda.sh. Read the man pages for more information man yes.

Expect is a great way to go and probably the most error proof way. If you know all the questions I think you could do this by just writing a file with the answers in the correct order, one per line and piping it in.
That install script is huge so as long as you can verify you know all the questions you could give this a try.
In my simple tests it works.
I have a test script that looks like this:
#!/bin/sh
echo -n "Do you accept "
read ANS
echo $ANS
echo -n "Install path: "
read ANS
echo $ANS
and an answers file that looks like this:
Y
/usr
Running it like so works... perhaps it will work for your monster install file as well.
cat answers | ./test.sh
Do you accept Y
Install path: /usr
If that doesn't work then the script is likely flushing and you will have to use expect or pexpect.
Good luck!
Actually, I downloaded and looked at the anaconda install script. Looks like it takes command line arguments.
/bin/bash Anaconda-2.2.0-Linux-x86_64.sh -h
usage: Anaconda-2.2.0-Linux-x86_64.sh [options]
Installs Anaconda 2.2.0
-b run install in batch mode (without manual intervention),
it is expected the license terms are agreed upon
-f no error if install prefix already exists
-h print this help message and exit
-p PREFIX install prefix, defaults to /home/cody.stevens/anaconda
Use the -b and -p options...
so use it like so:
/bin/bash Anaconda-2.2.0-Linux-x86_64.sh -b -p /usr
Also of note.. that script explicitly says not to run with '.' or 'sh' but 'bash' so they must have some dependency on a feature of bash.
--
Cody

Related

Azure Pipelines is it possible to run bash command with sudo? [duplicate]

I am trying to compile some sources using a makefile. In the makefile there is a bunch of commands that need to be ran as sudo.
When I compile the sources from a terminal all goes fine and the make is paused the first time a sudo command is ran waiting for password. Once I type in the password, make resumes and completes.
But I would like to be able to compile the sources in NetBeans. So, I started a project and showed netbeans where to find the sources, but when I compile the project it gives the error:
sudo: no tty present and no askpass program specified
The first time it hits a sudo command.
I have looked up the issue on the internet and all the solutions I found point to one thing: disabling the password for this user. Since the user in question here is root. I do not want to do that.
Is there any other solution?
Granting the user to use that command without prompting for password should resolve the problem. First open a shell console and type:
sudo visudo
Then edit that file to add to the very end:
username ALL = NOPASSWD: /fullpath/to/command, /fullpath/to/othercommand
eg
john ALL = NOPASSWD: /sbin/poweroff, /sbin/start, /sbin/stop
will allow user john to sudo poweroff, start and stop without being prompted for password.
Look at the bottom of the screen for the keystrokes you need to use in visudo - this is not vi by the way - and exit without saving at the first sign of any problem. Health warning: corrupting this file will have serious consequences, edit with care!
Try:
Use NOPASSWD line for all commands, I mean:
jenkins ALL=(ALL) NOPASSWD: ALL
Put the line after all other lines in the sudoers file.
That worked for me (Ubuntu 14.04).
Try:
ssh -t remotehost "sudo <cmd>"
This will remove the above errors.
After all alternatives, I found:
sudo -S <cmd>
The -S (stdin) option causes sudo to read the password from the standard input instead of the terminal device.
Source
Above command still needs password to be entered. To remove entering password manually, in cases like jenkins, this command works:
echo <password> | sudo -S <cmd>
sudo by default will read the password from the attached terminal. Your problem is that there is no terminal attached when it is run from the netbeans console. So you have to use an alternative way to enter the password: that is called the askpass program.
The askpass program is not a particular program, but any program that can ask for a password. For example in my system x11-ssh-askpass works fine.
In order to do that you have to specify what program to use, either with the environment variable SUDO_ASKPASS or in the sudo.conf file (see man sudo for details).
You can force sudo to use the askpass program by using the option -A. By default it will use it only if there is not an attached terminal.
Try this one:
echo '' | sudo -S my_command
For Ubuntu 16.04 users
There is a file you have to read with:
cat /etc/sudoers.d/README
Placing a file with mode 0440 in /etc/sudoers.d/myuser with following content:
myuser ALL=(ALL) NOPASSWD: ALL
Should fix the issue.
Do not forget to:
chmod 0440 /etc/sudoers.d/myuser
Login into your linux. Fire following commands. Be careful, as editing sudoer is a risky proposition.
$ sudo visudo
Once vi editor opens make the following changes:
Comment out Defaults requiretty
# Defaults requiretty
Go to the end of the file and add
jenkins ALL=(ALL) NOPASSWD: ALL
If by any chance you came here because you can't sudo inside the Ubuntu that comes with Windows10
Edit the /etc/hosts file from Windows (with Notepad), it'll be located at: %localappdata\lxss\rootfs\etc, add 127.0.0.1 WINDOWS8, this will get rid of the first error that it can't find the host.
To get rid of the no tty present error, always do sudo -S <command>
This worked for me:
echo "myuser ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers
where your user is "myuser"
for a Docker image, that would just be:
RUN echo "myuser ALL=(ALL) NOPASSWD:ALL" >> /etc/sudoers
In Jenkins:
echo '<your-password>' | sudo -S command
Eg:-
echo '******' | sudo -S service nginx restart
You can use Mask Password Plugin to hide your password
Make sure the command you're sudoing is part of your PATH.
If you have a single (or multi, but not ALL) command sudoers entry, you'll get the sudo: no tty present and no askpass program specified when the command is not part of your path (and the full path is not specified).
You can fix it by either adding the command to your PATH or invoking it with an absolute path, i.e.
sudo /usr/sbin/ipset
Instead of
sudo ipset
Command sudo fails as it is trying to prompt on root password and there is no pseudo-tty allocated (as it's part of the script).
You need to either log-in as root to run this command or set-up the following rules in your /etc/sudoers
(or: sudo visudo):
# Members of the admin group may gain root privileges.
%admin ALL=(ALL) NOPASSWD:ALL
Then make sure that your user belongs to admin group (or wheel).
Ideally (safer) it would be to limit root privileges only to specific commands which can be specified as %admin ALL=(ALL) NOPASSWD:/path/to/program
I think I can help someone with my case.
First, I changed the user setting in /etc/sudoers referring to above answer. But It still didn't work.
myuser ALL=(ALL) NOPASSWD: ALL
%mygroup ALL=(ALL:ALL) ALL
In my case, myuser was in the mygroup.
And I didn't need groups. So, deleted that line.
(Shouldn't delete that line like me, just marking the comment.)
myuser ALL=(ALL) NOPASSWD: ALL
It works!
Running shell scripts that have contain sudo commands in them from jenkins might not run as expected. To fix this, follow along
Simple steps:
On ubuntu based systems, run " $ sudo visudo "
this will open /etc/sudoers file.
If your jenkins user is already in that file, then modify to look like this:
jenkins ALL=(ALL) NOPASSWD: ALL
save the file
Relaunch your jenkins job
you shouldnt see that error message again :)
This error may also arise when you are trying to run a terminal command (that requires root password) from some non-shell script, eg sudo ls (in backticks) from a Ruby program. In this case, you can use Expect utility (http://en.wikipedia.org/wiki/Expect) or its alternatives.
For example, in Ruby to execute sudo ls without getting sudo: no tty present and no askpass program specified, you can run this:
require 'ruby_expect'
exp = RubyExpect::Expect.spawn('sudo ls', :debug => true)
exp.procedure do
each do
expect "[sudo] password for _your_username_:" do
send _your_password_
end
end
end
[this uses one of the alternatives to Expect TCL extension: ruby_expect gem].
For the reference, in case someone else encounter the same issue, I was stuck during a good hour with this error which should not happen since I was using the NOPASSWD parameter.
What I did NOT know was that sudo may raise the exact same error message when there is no tty and the command the user try to launch is not part of the allowed command in the /etc/sudoers file.
Here a simplified example of my file content with my issue:
bguser ALL = NOPASSWD: \
command_a arg_a, \
command_b arg_b \
command_c arg_c
When bguser will try to launch "sudo command_b arg_b" without any tty (bguser being used for some daemon), then he will encounter the error "no tty present and no askpass program specified".
Why?
Because a comma is missing at the end of line in the /etc/sudoers file...
(I even wonder if this is an expected behavior and not a bug in sudo since the correct error message for such case shoud be "Sorry, user bguser is not allowed to execute etc.")
I was getting this error because I had limited my user to only a single executable 'systemctl' and had misconfigured the visudo file.
Here's what I had:
jenkins ALL=NOPASSWD: systemctl
However, you need to include the full path to the executable, even if it is on your path by default, for example:
jenkins ALL=NOPASSWD: /bin/systemctl
This allows my jenkins user to restart services but not have full root access
If you add this line to your /etc/sudoers (via visudo) it will fix this problem without having to disable entering your password and when an alias for sudo -S won't work (scripts calling sudo):
Defaults visiblepw
Of course read the manual yourself to understand it, but I think for my use case of running in an LXD container via lxc exec instance -- /bin/bash its pretty safe since it isn't printing the password over a network.
Using pipeline:
echo your_pswd | sudo -S your_cmd
Using here-document:
sudo -S cmd <<eof
pwd
eof
#remember to put the above two lines without "any" indentations.
Open a terminal to ask password (whichever works):
gnome-terminal -e "sudo cmd"
xterm -e "sudo cmd"
I faced this issue when working on an Ubuntu 20.04 server.
I was trying to run a sudo command from a remote machine to deploy an app to the server. However when I run the command I get the error:
sudo: no tty present and no askpass program specified
The remote script failed with exit code 1
Here's how I fixed it:
The issue is caused by executing a sudo command which tries to request for a password, but sudo does not have access to a tty to prompt the user for a passphrase. As it can’t find a tty, sudo falls back to an askpass method but can’t find an askpass command configured, so the sudo command fails.
To fix this you need to be able to run sudo for that specific user with no password requirements. The no password requirements is configured in the /etc/sudoers file. To configure it run either of the commands below:
sudo nano /etc/sudoers
OR
sudo visudo
Note: This opens the /etc/sudoers file using your default editor.
Next, Add the following line at the bottom of the file:
# Allow members to run all commands without a password
my_user ALL=(ALL) NOPASSWD:ALL
Note: Replace my_user with your actual user
If you want the user to run specific commands you can specify them
# Allow members to run specific commands without a password
my_user ALL=(ALL) NOPASSWD:/bin/myCommand
OR
# Allow members to run specific commands without a password
my_user ALL=(ALL) NOPASSWD: /bin/myCommand, /bin/myCommand, /bin/myCommand
Save the changes and exit the file.
For more help, read the resource in this link: sudo: no tty present and no askpass program specified
That's all.
I hope this helps
The solution to the problem is
If you came across this issue anywhere else apart from the Jenkins instance follow this from the 2nd step. The first step is for the user who is having issue with the Jenkins instance.
Go to Jenkins instance of Google Cloud Console.
Enter the commands
sudo su
visudo -f /etc/sudoers
Add following line at the end
jenkins ALL= NOPASSWD: ALL
Checkout here to understand the rootcause of this issue
No one told what could cause this error, in case of migration from one host to another, remember about checking hostname in sudoers file:
So this is my /etc/sudoers config
User_Alias POWERUSER = user_name
Cmnd_Alias SKILL = /root/bin/sudo_auth_wrapper.sh
POWERUSER hostname=(root:root) NOPASSWD: SKILL
if it doesn't match
uname -a
Linux other_hostname 3.10.17 #1 SMP Wed Oct 23 16:28:33 CDT 2013 x86_64 Intel(R) Core(TM) i3-4130T CPU # 2.90GHz GenuineIntel GNU/Linux
it will pop up this error:
no tty present and no askpass program specified
Other options, not based on NOPASSWD:
Start Netbeans with root privilege ((sudo netbeans) or similar) which will presumably fork the build process with root and thus sudo will automatically succeed.
Make the operations you need to do suexec -- make them owned by root, and set mode to 4755. (This will of course let any user on the machine run them.) That way, they don't need sudo at all.
Creating virtual hard disk files with bootsectors shouldn't need sudo at all. Files are just files, and bootsectors are just data. Even the virtual machine shouldn't necessarily need root, unless you do advanced device forwarding.
Although this question is old, it is still relevant for my more or less up-to-date system. After enabling debug mode of sudo (Debug sudo /var/log/sudo_debug all#info in /etc/sudo.conf) I was pointed to /dev: "/dev is world writable". So you might need to check the tty file permissions, especially those of the directory where the tty/pts node resides in.
I was able to get this done but please make sure to follow the steps properly.
This is for the anyone who is getting import errors.
Step1: Check if files and folders have got execute permission issue.
Linux user use:
chmod 777 filename
Step2: Check which user has the permission to execute it.
Step3: open terminal type this command.
sudo visudo
add this lines to the code below
www-data ALL=(ALL) NOPASSWD:ALL
nobody ALL=(ALL) NOPASSWD:/ALL
this is to grant permission to execute the script and allow it to use all the libraries. The user generally is 'nobody' or 'www-data'.
now edit your code as
echo shell_exec('sudo -u the_user_of_the_file python your_file_name.py 2>&1');
go to terminal to check if the process is running
type this there...
ps aux | grep python
this will output all the process running in python.
Add Ons:
use the below code to check the users in your system
cut -d: -f1 /etc/passwd
Thank You!
1 open /etc/sudoers
type sudo vi /etc/sudoers. This will open your file in edit mode.
2 Add/Modify linux user
Look for the entry for Linux user. Modify as below if found or add a new line.
<USERNAME> ALL=(ALL) NOPASSWD: ALL
3 Save and Exit from edit mode
I had the same error message when I was trying to mount sshfs which required sudo : the command is something like this :
sshfs -o sftp_server="/usr/bin/sudo /usr/lib/openssh/sftp-server" user#my.server.tld:/var/www /mnt/sshfs/www
by adding the option -o debug
sshfs -o debug -o sftp_server="/usr/bin/sudo /usr/lib/openssh/sftp-server" user#my.server.tld:/var/www /mnt/sshfs/www
I had the same message of this question :
sudo: no tty present and no askpass program specified
So by reading others answer I became to make a file in /etc/sudoer.d/user on my.server.tld with :
user ALL=NOPASSWD: /usr/lib/openssh/sftp-server
and now I able to mount the drive without giving too much extra right to my user.
Below actions work for on ubuntu20
edit /etc/sudoers
visudo
or
vi /etc/sudoers
add below content
userName ALL=(ALL) NOPASSWD: ALL
%sudo ALL=(ALL:ALL) NOPASSWD:ALL
I'm not sure if this is a more recent change, but I just had this problem and sudo -S worked for me.

How can I simply redirect text containing $HOME into /etc/zshenv with sudo?

I want a script to set up a better (but non-default) location for my .zshrc file:
% sudo echo "ZDOTDIR=$HOME/.config/zsh" >> /etc/zshenv
but this fails:
zsh: permission denied: /etc/zshenv
The problem is related to the redirection being done first, but there is no obvious way to solve this. I can hear you saying 'use zsh -c' but that fails:
sudo zsh -c 'echo "ZDOTDIR=$HOME/.config/zsh" >> /etc/zshenv'
results in $HOME being evaluated inside the shell launched with sudo, so my /etc/zshenv file contains
ZDOTDIR=/var/root/.config/zsh
Trust me: my home directory is not /var/root.
I tried --preserve-env but that did not work:
sudo --preserve-env zsh -c 'echo "ZDOTDIR=$HOME/.config/zsh" >> /etc/zshenv'
Obviously I can find a workaround for this, such as saving $HOME to a local variable in the script, but it seems like there must be a more direct and simple and straightforward way to do it.
I just realized I was thinking about the problem all wrong. I want to prevent $HOME from being evaluated. Of course escaping a single quote inside a single quote is a new kind of PITA, but here it is:
sudo zsh -c 'echo '"'"'ZDOTDIR=$HOME/.config/zsh'"'"' >> /etc/zshenv'

How to run script in Solaris after boot once

I looking for the right way to run shell script first boot Solaris.
I need to run resize command, there is a my script
#!/bin/sh -ux
echo "#!/bin/sh -ux" > /etc/rc3.d/S90scale
echo "/sbin/zpool set autoexpand=on rpool" >> /etc/rc3.d/S90scale
echo "/sbin/zpool online -e rpool c1d0" >> /etc/rc3.d/S90scale
echo "rm /etc/rc3.d/S90scale" >> /etc/rc3.d/S90scale
echo "/sbin/shutdown -y -i6 -g0" >> /etc/rc3.d/S90scale
chmod a+x /etc/rc3.d/S90scale
actually script working properly, but unfortunately resize do not work. When I do the same things from user session everything just fine.
What exactly I doing wrong?
Your method is not the "right" one to run a script once after boot as it uses the legacy approach. The correct way would be to create an smf service that runs once. However, it does work anyway with Solaris 10 and 11 as the rc scripts while deprecated are still processed so I won't elaborate more about smf.
The main issue is you don't check for errors and whatever happens, it remove the script and reboot preventing any analysis to occur.
I would suggest to modify your script to log what is happening in a file and quit on error:
#!/bin/ksh
cat > /etc/rc3.d/S90scale <<%EOF%
exec > /var/tmp/S90scale.log 2>&1 # logs everything to file
set -xe # show commands and exits on error
/sbin/zpool set autoexpand=on rpool
/sbin/zpool online -e rpool c1d0
mv /etc/rc3.d/S90scale /etc/rc3.d/_S90scale
/sbin/shutdown -y -i6 -g0
%EOF%
chmod a+x /etc/rc3.d/S90scale
After the next reboot complete, you should have a look to the /var/tmp/S90scale.log file and possibly see an error message there.

PintOS, kernel panic with -v option bochs on ubuntu

when i do "pintos -- run alarm-multiple" in .../build/ everything seems fine.
but when i do "make check" in .../build/ all 7 tests failed with the same
"Run didn't start up properly: no "pintos booting" message"
pintos -v -k -T 60 --bochs -- -q run alarm-single < /dev/null 2> tests/threads/alarm-single.errors > tests/threads/alarm-single.output
perl -I../.. ../../tests/threads/alarm-single.ck tests/threads/alarm-single tests/threads/alarm-single.result
FAIL tests/threads/alarm-single
Run didn't start up properly: no "Pintos booting" message
then I discovered "pintos -v -k -T 60 --bochs -- -q run alarm-single" in .../build
it gives a
Bochs is exiting with the following message:
[ ] bochsrc.txt:12: display library 'nogui' not available
if I take away the "-v" it will be fine.
How to fix this
display library 'nogui' not available
Nobody seems to answer me... I got that myself at last.
just need to change the bochs's configure : ./configer --with-nogui
and then compile it again:
make
sudo make install
After that pintos's make check will work.
i had same problem and i solved it.
open "/pintos/src/tests/Make.tests"
edit line 54 (delete -v)
TESTCMD = pintos -v -k -T $(TIMEOUT)
then, in "/threads/build" you can do
make check
Remember when you using Ubuntu 14.04 or 16.04, never forget doing such things when you download original pintos project or any pintos project from Github.
(Any line with no parentheses are terminal commands)
cd ~
gedit .bashrc
(add next line to the final of the file)
{export PATH="$PATH:/home/{username}/pintos/src/utils"}
(save)
bash
cd ~/pintos/src/utils
gedit Makefile
(You need to change one line)
{change LDFLAGS = -lm to LDLIBS = -lm}
(save)
make
Then you can compile and run "make check" for pintos with no error.
(Any ~/pintos should be changed to your pintos path)
Remember final make in ~/pintos/src/utils is ridiculously important. Otherwise you will get "Run didn't start up properly: no "Pintos booting" message".
You can check full version here. http://www.luosheng-parallelbgls.com.cn/2016/03/29/pintos-install/
Cause this is a Chinese version, I would appreciate for anyone who can translate it to English.

Cant access Coda application from command-line

I am having trouble accessing Coda from command-line. I installed the "command-line coda" plug-in, verified that my installation is in the correct location, yet I still can seem to access Coda. Coda sits in my "Applications" folder which is the default location for the plug-in.
Anyone have have this problem? Any tips? On the their site it is recommended that you change the path.
export CODEPATH=/Applications/Coda.app
So I included the above line in my .bash_profile which did not help.
$ Coda -v
-bash: Coda: command not found
Thanks for any direction you can provide.
The default way to open an application on a Mac is to use open -a AppName so you should be able to change your bash profile to use that:
$ open -a Coda
I've created a bash script (as opposed to using the plugin) that Gregory Tomlinson originally posted about (it looks like he's since taken it down but it looks like the following).
Create a new file in /bin called coda:
$ cd /bin
$ sudo touch coda
$ vim coda
Hit an i to enter insert mode. Then include the following code:
#! /bin/bash
if [ "$1" = "" ]; then
echo "Please specify a file to open or create"
exit 0
else
for ARG in $*
do
touch -a $ARG && open -a Coda $ARG
done
exit 0
fi
Save and quit (hit the esc to exit insert mode then type :w !sudo tee % >/dev/null followed by the return key, press L for load when prompted, then type :q to quit). Then give that file execute permissions:
$ chmod u+x coda
Start a new Terminal window and you should be able to use:
$ coda filename.foo
Or just:
$ coda
For some strange reason, my paid registered Coda 2 app just wouldn't open for me this morning. I found this terminal command that worked for me:
open -a Coda\ 2
You can also put the following in your ~/.bash_profile file:
alias coda='open -a "Coda 2"'
I had a similar problem. After installing the plug-in, I still couldn't launch coda from the command line. I took a closer look at /user/local/bin and somehow the permissions had gotten reset so I didn't have execute permissions for /user/local/bin.
I updated my permissions with:
sudo chmod o=rx,g=rx /usr/local/bin
This solved my problem. However, Coda won't launch if the specified file does not exist, which makes it hard to create a file from the command line.