I usually build my library ./configure && make && sudo make install. However the Travis docs discourage using sudo http://docs.travis-ci.com/user/workers/container-based-infrastructure/
So I changed the build command to ./configure --prefix=$HOME && make && make install. This worked, however at the next step (building a Python extension) I got an error
/usr/bin/ld: cannot find -lprimesieve
Any ideas? Do I need to add $HOME/lib to some environment variables, because I changed prefix?
My travis config https://github.com/hickford/primesieve-python/blob/travis-ci/.travis.yml
Build log with error https://travis-ci.org/hickford/primesieve-python/jobs/69536543#L382
Try setting set LD_LIBRARY_PATH which is like PATH for libraries. For example:
LD_LIBRARY_PATH= $HOME/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH
More detailed information about library path variables is here.
Environment variables that specifically influence how the configure script passes arguments to compilation are LIBS and LD_FLAGS. bash ./configure --help mentions these.
And as you mention in the comments LIBRARY_PATH also needs to be set. See LD_LIBRARY_PATH vs LIBRARY_PATH for an explanation of the difference.
Related
I am trying to activate cpplint within vs code. I have installed it in Anacanda environment where executable
/home/ubuntu/anaconda3/bin/cpplint
I have a link to it
ls -l /home/ubuntu/anaconda3/bin/cpplint
Unfortunately per visual code cpplint extension still getting error of "Cpplint could not find executable"
Please, advice to configure it correctly.
Download and install
sudo apt-get install python-pip
pip install --user cpplint
Verify install result
ls -l /usr/local/bin/cpplint
If you still have issues check cpplint.cpplintPath and verify the execution path is set correctly.
Also, if you installed cpplint into ~/.local/ directories, by default ~/.local/bin is not included in PATH. So to fix just that add:
export PATH=$PATH:~/.local/bin/
to your ~/.bashrc
I am trying to use apache kafka with go, things look good when i execute the project with go run but when i use docker build i get error....
# pkg-config --cflags rdkafka
Package rdkafka was not found in the pkg-config search path.
Perhaps you should add the directory containing `rdkafka.pc'
to the PKG_CONFIG_PATH environment variable
No package 'rdkafka' found
pkg-config: exit status 1
I installed librdkafka from https://github.com/confluentinc/confluent-kafka-go
git clone https://github.com/edenhill/librdkafka.git
cd librdkafka
./configure --prefix /usr
make
sudo make install
I tried
PKG_CONFIG_PATH=/usr/lib/pkgconfig
source ~/.bashrc
but not luck. Any help is appreciated.
Probably you should include librdkafka.dll, msvcr120.dll and zlib.dll in your project root. At least this is what i should do to get this work on Windows. Not sure about Linux.
This below line inside the Dockerfile worked for me as this sets the environmental variable and this will persist when a container is run from the resulting image.
ENV PKG_CONFIG_PATH ${PKG_CONFIG_PATH}:/usr/lib/pkgconfig/
I am trying to compile matconvnet-1.0-beta20 with Matlab 2016a on Ubuntu 16.04. Initial phase of compilation works fine:
untar('http://www.vlfeat.org/matconvnet/download/matconvnet-1.0-beta20.tar.gz') ;
cd matconvnet-1.0-beta20
run matlab/vl_compilenn
The error happens when I run vl_simplenn(network, image) which gives following error:
Invalid MEX-file '/home/matconvnet-1.0-beta20/matlab/mex/vl_nnconv.mexa64':
/usr/local/MATLAB/R2016a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by /home/matconvnet-1.0-beta20/matlab/mex/vl_nnconv.mexa64)
To understand the cause of problem, I run /usr/lib/x86_64-linux-gnu/libstdc++.so.6 | grep GLIBC which doesn't give any output bash: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: Permission denied
Also more /usr/lib/x86_64-linux-gnu/libstdc++.so.6 gives no output:
******** /usr/lib/x86_64-linux-gnu/libstdc++.so.6: Not a text file ********
I did some research and found some possible solutions:
http://it.mathworks.com/matlabcentral/newsreader/view_thread/162466
The problem is that MATLAB secretly changes LD_LIBRARY_PATH on startup
to point to the MATLAB version of GLIBC++, so that GLIBC++ 3.4.9 can
no longer be found. The solution is to modify matlab/bin/.matlab7rc.sh
so that "LDPATH_PREFIX" contains the path to the version of GLIB
installed with your compiler, then this is found before the
matlab-supplied library.
so I edited /usr/local/MATLAB/R2016a/bin/.matlab7rc.sh and modified LDPATH_PREFIX='' in 195th line to LDPATH_PREFIX='/usr/lib/x86_64-linux-gnu'.
After applying this change, the problem still exist.
As suggested here, I copied .matlab7rc.sh to current working directory of project, but still error persist.
https://askubuntu.com/questions/719028/version-glibcxx-3-4-21-not-found
According to first answer, running this command
ln -s /usr/lib/x86_64-linux-gnu/libstdc++.so.6 usr/local/MATLAB/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6
gives an error:
ln: failed to create symbolic link 'usr/local/MATLAB/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6': No such file or directory
Seems like second solution suggests changes of LD_PRELOAD path in .matlab7rc.sh, but it is not anywhere inside the file.
How to tell mex to link with the libstdc++.so.6 in /usr/lib instead of the one in the MATLAB directory?
From Matlab directory in /usr/local/MATLAB/R2016a/bin$ I run
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu/libstdc++.so.6
but the problem still exist.
Maybe there I didn't apply the solution in the correct way Or maybe there is another solution elsewhere that I didn't find. Please let me know, I am very confused!!!
You need before execute (matlab in my case) add path of library:
In console execute this:
LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libstdc++.so.6 matlab
I had the same problem.
In my case, to solve it, I first ran "locate" to list all the possible versions of the library in the system.
locate libstdc++
As an example, I report the result on my system
I then set the most recent version of "lib" by exporting the environment variable:
export LD_PRELOAD="/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21"
So, the fullpath of the library to be set depends on where it is allocated in your system.
There are 2 possible solutions:
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu/libstdc++.so.6
Install this package:
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get upgrade
sudo apt-get dist-upgrade
MAYBE the second solution you mentioned really works, but you have done it before. So you cannot operate in the same way again because you have ever linked /usr/lib/x86_64-linux-gnu/libstdc++.so.6 to usr/local/MATLAB/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6. TRY rebooting?
Also, you use MATLAB R2016a, but this command applies to R2014a. Was it that you ignore this point?
I'm trying to get postgres server status with:
sudo /etc/init.d/postgres status -u postgres
But getting following error:
/home/alex/olddisk/usr/local/pgsql/bin/pg_ctl: error while loading shared libraries: libpq.so.5: cannot open shared object file: No such file or directory
I added:
export LD_LIBRARY_PATH=""
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib/"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/alex/olddisk/usr/local/pgsql/lib/"
to my .bashrc, but it didn't help.
Thank you.
I ran into this error when I built postgresql from source using the --prefix flag. Building from source installs the necessary shared libs to the libs folder under the prefix directory you specified, instead of the usual place installations put shared libs. To solve the problem I just added the [prefix].libs folder to the LD_LIBRARY_PATH environment variable. For example, after building postgres using --prefix /mike/sandbox/postgres, the below command solved the issue:
export LD_LIBRARY_PATH=/mike/sandbox/postgres/lib:$LD_LIBRARY_PATH
I think this issue is duplicated, I faced the same problem and posted a solution here.
try this:
1: Know the path of "libpq.so.5"
find / -name libpq.so.5
Output example: "/usr/pgsql-9.4/lib/libpq.so.5" If found nothing, check if you have already installed the suitable postgresql-libs for your postgresql version and your OS platform
2: Symbolic link that library in a "well known" library path like "/usr/lib":
ln -s /usr/pgsql-9.4/lib/libpq.so.5 /usr/lib/libpq.so.5
Attention: If your platform is 64 bit, you MUST also symbolic link to 64 bit libraries path:
ln -s /usr/pgsql-9.4/lib/libpq.so.5 /usr/lib64/libpq.so.5
3: Be happy !
Please ensure you have 'postgresql94' package installed as well (in addition to postgresql94-server, postgresql94-lib, postgresql94-devel and whatever other PG related package you already have). These libraries get installed along with that package.
Some ideas:
Your modified ~/.bashrc only takes effect when you start a new (interactive) shell. Though catching up on that will not help you because:
/etc/sudoers, your configuration file of sudo, probably specifies env_reset. This means, that /etc/init.d/postgres will not see the content of $LD_LIBRARY_PATH of your shell.
Insert debug statements in /etc/init.d/postgres to verify what I told you: echo "LDPATH: $LD_LIBRARY_PATH" >&2
Check /etc/init.d/postgres. Probably you will have to insert the third one of your export statements near the start of this script. Or you will have to update an existing export LD_LIBRARY_PATH= statement.
Have you installed the necessary libraries?
If you are using ubuntu try:
sudo apt-get install libpq libpq-dev
I've just updated to Kubuntu 12.04. Everything works fine except for the latest custom-build emacs. It says now:
emacs: symbol lookup error: emacs: undefined symbol: gtk_window_set_has_resize_grip
So I've decided to re-build emacs. For that I've git pull the latest snapshot, and have done everything as I usually do, but now I get an error during compilation:
In file included from /home/boris/its/blds/emacs/lib-src/emacsclient.c:76:0:
../lib/getopt.h:196:8: error: redefinition of ‘struct option’
/usr/include/getopt.h:106:8: note: originally defined here
../lib/getopt.h:245:12: error: conflicting types for ‘getopt_long’
/usr/include/getopt.h:175:12: note: previous declaration of ‘getopt_long’ was here
../lib/getopt.h:249:12: error: conflicting types for ‘getopt_long_only’
/usr/include/getopt.h:179:12: note: previous declaration of ‘getopt_long_only’ was here
make[1]: *** [emacsclient] Error 1
make[1]: Leaving directory `/home/boris/its/blds/emacs/lib-src'
make: *** [lib-src] Error 2
Google search reveals almost nothing on these errors.
Edit:
The following solves it (thanks to JSON):
git pull
./autogen.sh
./configure --prefix=/home/boris/its/soft/Emacs_24.1.50
make bootstrap
make install
The simplest way is to use PPA: emacs-snapshot.
sudo add-apt-repository ppa:cassou/emacs
sudo apt-get update
sudo apt-get install emacs-snapshot
I had these problems updating to Ubuntu 12.04, and got past it by going back to the instructions from INSTALL.BZR for first time checkout - it seems the configure file needs to be regenerated due to changes in libc in the new version of Ubuntu.
This is what I do to build emacs after a git pull (my script to do it nightly)
make distclean && autoreconf -i -I m4 && ./configure && make && sudo make install
i had the same problem than the op, and i just removed emacs from the system, and compiled from scratch.
and no, i didn't have to add a ppa, and every time i see an answer like that getting all the votes, it makes me wonder about stackexchange in general , it just misinforms and misleads others who may have the same problem.
and no, i said it once and i'll say it again, Just download the latest emacs from fsf.
let me add that getopt.h is part of libc6-dev (as json said). and libc6-dev is part of the required group like libjpeg libncurses libpng libtiff xlibs etc. remove it once and reinstall. the problem is with the configuration options path which need to be specified this time around in the prefix of emacs24 at the time of configuration. but neither autogen nor bootstrap are necessary, but just make and make install.
make maintainer-clean
./autogen.sh
./configure
make
http://debbugs.gnu.org/cgi/bugreport.cgi?bug=10108#8
I had the same issue as you but for the 24.5 tag. The problem was I didn't rerun autogen.sh to create a new configure script. I assumed that any untracked file would be listed by git status, though all the configuration output from autogen.sh is ignored in .gitignore.