I've just updated to Kubuntu 12.04. Everything works fine except for the latest custom-build emacs. It says now:
emacs: symbol lookup error: emacs: undefined symbol: gtk_window_set_has_resize_grip
So I've decided to re-build emacs. For that I've git pull the latest snapshot, and have done everything as I usually do, but now I get an error during compilation:
In file included from /home/boris/its/blds/emacs/lib-src/emacsclient.c:76:0:
../lib/getopt.h:196:8: error: redefinition of ‘struct option’
/usr/include/getopt.h:106:8: note: originally defined here
../lib/getopt.h:245:12: error: conflicting types for ‘getopt_long’
/usr/include/getopt.h:175:12: note: previous declaration of ‘getopt_long’ was here
../lib/getopt.h:249:12: error: conflicting types for ‘getopt_long_only’
/usr/include/getopt.h:179:12: note: previous declaration of ‘getopt_long_only’ was here
make[1]: *** [emacsclient] Error 1
make[1]: Leaving directory `/home/boris/its/blds/emacs/lib-src'
make: *** [lib-src] Error 2
Google search reveals almost nothing on these errors.
Edit:
The following solves it (thanks to JSON):
git pull
./autogen.sh
./configure --prefix=/home/boris/its/soft/Emacs_24.1.50
make bootstrap
make install
The simplest way is to use PPA: emacs-snapshot.
sudo add-apt-repository ppa:cassou/emacs
sudo apt-get update
sudo apt-get install emacs-snapshot
I had these problems updating to Ubuntu 12.04, and got past it by going back to the instructions from INSTALL.BZR for first time checkout - it seems the configure file needs to be regenerated due to changes in libc in the new version of Ubuntu.
This is what I do to build emacs after a git pull (my script to do it nightly)
make distclean && autoreconf -i -I m4 && ./configure && make && sudo make install
i had the same problem than the op, and i just removed emacs from the system, and compiled from scratch.
and no, i didn't have to add a ppa, and every time i see an answer like that getting all the votes, it makes me wonder about stackexchange in general , it just misinforms and misleads others who may have the same problem.
and no, i said it once and i'll say it again, Just download the latest emacs from fsf.
let me add that getopt.h is part of libc6-dev (as json said). and libc6-dev is part of the required group like libjpeg libncurses libpng libtiff xlibs etc. remove it once and reinstall. the problem is with the configuration options path which need to be specified this time around in the prefix of emacs24 at the time of configuration. but neither autogen nor bootstrap are necessary, but just make and make install.
make maintainer-clean
./autogen.sh
./configure
make
http://debbugs.gnu.org/cgi/bugreport.cgi?bug=10108#8
I had the same issue as you but for the 24.5 tag. The problem was I didn't rerun autogen.sh to create a new configure script. I assumed that any untracked file would be listed by git status, though all the configuration output from autogen.sh is ignored in .gitignore.
Related
I'm trying to install Net::SSLeay with Carton.
The installation fails with this message
Configuring Net-SSLeay-1.90 Running Makefile.PL Do you want to run external tests?
These tests *will* *fail* if you do not have network connectivity. [n] n
*** Found LibreSSL-2.8.3 installed in /usr
*** Be sure to use the same compiler and options to compile your OpenSSL, perl, and Net::SSLeay. Mixing and matching compilers is not supported.
Checking if your kit is complete... Looks good
WARNING: /opt/homebrew/Cellar/perl/5.32.1_1/bin/perl is loading libcrypto in an unsafe way -> N/A
I've tried this with system perl, brew perl and multiple perlbrew perls.
Google came up with a temp solution to build homebrew using x86_64 architecture.
This did work for the libcrypto error, but gave me a whole different set of issues including mysql not running anymore.
Other "solutions" that I've tried are symlinking libssl & libcrypto as suggested by numerous other posts, all sadly without success.
Any ideas how to fix this or work around this without having to reinstall all brew packages as x86_64 ?
Quick Workaround
If you are looking for a quick workaround follow these steps.
Run carton bundle to create a vendor cache directory.
Go to cached tarball 'cache/authors/id/C/CH/CHRISN/' and unpack tar -xvzf Net-SSLeay-1.90.tar.gz
Edit Makefile.PL, change my $prefix = find_openssl_prefix(); to
my $prefix = '/opt/homebrew/opt/openssl#1.1'; ** adjust to your openssl location.
Save and create new tarball tar -czvf Net-SSLeay-1.90.tar.gz Net-SSLeay-1.90
Run carton install --cached to use the altered version
Hope this helps anyone in search of workaround
You can solve this in two steps:
upgrade ExtUtils::MakeMaker to at least version 7.58 (e.g. cpanm ExtUtils::MakeMaker)
install openssl via macports (sudo port install openssl) or homebrew (brew install --cask openssl)
After the Monterey update this broke again also on the x86_64 architecture, but just symlinking your latest openssl (where ever it is, depending how you have installed it) seemed to fix this. Example:
$ export OPENSSL_PREFIX=[find your openssl installation]
$ sudo ln -s $OPENSSL_PREFIX/lib/libssl.dylib /usr/local/lib/
$ sudo ln -s $OPENSSL_PREFIX/lib/libcrypto.dylib /usr/local/lib/
Better workaround:
I entered export OPENSSL_PREFIX=/opt/homebrew/opt/openssl#1.1 in my shell and then ran cpan. I checked the code in Makefile.PL and the first thing the function find_openssl_prefix does is to check the OPENSSL_PREFIX environment variable. If it is set, then it the function will return its contents.
Add the variable to your .profile, .cshrc, .bashrc, .zshrc, or whatever rc file your shell uses and you never have to worry about it again!!
I am trying to compile matconvnet-1.0-beta20 with Matlab 2016a on Ubuntu 16.04. Initial phase of compilation works fine:
untar('http://www.vlfeat.org/matconvnet/download/matconvnet-1.0-beta20.tar.gz') ;
cd matconvnet-1.0-beta20
run matlab/vl_compilenn
The error happens when I run vl_simplenn(network, image) which gives following error:
Invalid MEX-file '/home/matconvnet-1.0-beta20/matlab/mex/vl_nnconv.mexa64':
/usr/local/MATLAB/R2016a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6: version
`GLIBCXX_3.4.21' not found (required by /home/matconvnet-1.0-beta20/matlab/mex/vl_nnconv.mexa64)
To understand the cause of problem, I run /usr/lib/x86_64-linux-gnu/libstdc++.so.6 | grep GLIBC which doesn't give any output bash: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: Permission denied
Also more /usr/lib/x86_64-linux-gnu/libstdc++.so.6 gives no output:
******** /usr/lib/x86_64-linux-gnu/libstdc++.so.6: Not a text file ********
I did some research and found some possible solutions:
http://it.mathworks.com/matlabcentral/newsreader/view_thread/162466
The problem is that MATLAB secretly changes LD_LIBRARY_PATH on startup
to point to the MATLAB version of GLIBC++, so that GLIBC++ 3.4.9 can
no longer be found. The solution is to modify matlab/bin/.matlab7rc.sh
so that "LDPATH_PREFIX" contains the path to the version of GLIB
installed with your compiler, then this is found before the
matlab-supplied library.
so I edited /usr/local/MATLAB/R2016a/bin/.matlab7rc.sh and modified LDPATH_PREFIX='' in 195th line to LDPATH_PREFIX='/usr/lib/x86_64-linux-gnu'.
After applying this change, the problem still exist.
As suggested here, I copied .matlab7rc.sh to current working directory of project, but still error persist.
https://askubuntu.com/questions/719028/version-glibcxx-3-4-21-not-found
According to first answer, running this command
ln -s /usr/lib/x86_64-linux-gnu/libstdc++.so.6 usr/local/MATLAB/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6
gives an error:
ln: failed to create symbolic link 'usr/local/MATLAB/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6': No such file or directory
Seems like second solution suggests changes of LD_PRELOAD path in .matlab7rc.sh, but it is not anywhere inside the file.
How to tell mex to link with the libstdc++.so.6 in /usr/lib instead of the one in the MATLAB directory?
From Matlab directory in /usr/local/MATLAB/R2016a/bin$ I run
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu/libstdc++.so.6
but the problem still exist.
Maybe there I didn't apply the solution in the correct way Or maybe there is another solution elsewhere that I didn't find. Please let me know, I am very confused!!!
You need before execute (matlab in my case) add path of library:
In console execute this:
LD_PRELOAD=/usr/lib/x86_64-linux-gnu/libstdc++.so.6 matlab
I had the same problem.
In my case, to solve it, I first ran "locate" to list all the possible versions of the library in the system.
locate libstdc++
As an example, I report the result on my system
I then set the most recent version of "lib" by exporting the environment variable:
export LD_PRELOAD="/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.21"
So, the fullpath of the library to be set depends on where it is allocated in your system.
There are 2 possible solutions:
LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/x86_64-linux-gnu/libstdc++.so.6
Install this package:
sudo add-apt-repository ppa:ubuntu-toolchain-r/test
sudo apt-get update
sudo apt-get upgrade
sudo apt-get dist-upgrade
MAYBE the second solution you mentioned really works, but you have done it before. So you cannot operate in the same way again because you have ever linked /usr/lib/x86_64-linux-gnu/libstdc++.so.6 to usr/local/MATLAB/R2014a/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6. TRY rebooting?
Also, you use MATLAB R2016a, but this command applies to R2014a. Was it that you ignore this point?
I'm trying to get postgres server status with:
sudo /etc/init.d/postgres status -u postgres
But getting following error:
/home/alex/olddisk/usr/local/pgsql/bin/pg_ctl: error while loading shared libraries: libpq.so.5: cannot open shared object file: No such file or directory
I added:
export LD_LIBRARY_PATH=""
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/lib/"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/alex/olddisk/usr/local/pgsql/lib/"
to my .bashrc, but it didn't help.
Thank you.
I ran into this error when I built postgresql from source using the --prefix flag. Building from source installs the necessary shared libs to the libs folder under the prefix directory you specified, instead of the usual place installations put shared libs. To solve the problem I just added the [prefix].libs folder to the LD_LIBRARY_PATH environment variable. For example, after building postgres using --prefix /mike/sandbox/postgres, the below command solved the issue:
export LD_LIBRARY_PATH=/mike/sandbox/postgres/lib:$LD_LIBRARY_PATH
I think this issue is duplicated, I faced the same problem and posted a solution here.
try this:
1: Know the path of "libpq.so.5"
find / -name libpq.so.5
Output example: "/usr/pgsql-9.4/lib/libpq.so.5" If found nothing, check if you have already installed the suitable postgresql-libs for your postgresql version and your OS platform
2: Symbolic link that library in a "well known" library path like "/usr/lib":
ln -s /usr/pgsql-9.4/lib/libpq.so.5 /usr/lib/libpq.so.5
Attention: If your platform is 64 bit, you MUST also symbolic link to 64 bit libraries path:
ln -s /usr/pgsql-9.4/lib/libpq.so.5 /usr/lib64/libpq.so.5
3: Be happy !
Please ensure you have 'postgresql94' package installed as well (in addition to postgresql94-server, postgresql94-lib, postgresql94-devel and whatever other PG related package you already have). These libraries get installed along with that package.
Some ideas:
Your modified ~/.bashrc only takes effect when you start a new (interactive) shell. Though catching up on that will not help you because:
/etc/sudoers, your configuration file of sudo, probably specifies env_reset. This means, that /etc/init.d/postgres will not see the content of $LD_LIBRARY_PATH of your shell.
Insert debug statements in /etc/init.d/postgres to verify what I told you: echo "LDPATH: $LD_LIBRARY_PATH" >&2
Check /etc/init.d/postgres. Probably you will have to insert the third one of your export statements near the start of this script. Or you will have to update an existing export LD_LIBRARY_PATH= statement.
Have you installed the necessary libraries?
If you are using ubuntu try:
sudo apt-get install libpq libpq-dev
I want to install this varnish vagent2
https://github.com/varnish/vagent2
I am working around it but it is not installing.. it is giving me following error..
root#ns5 [/usr/local/src/vagent2-master]# ./autogen.sh
+ aclocal
configure.ac:65: error: pkg.m4 missing, please install pkg-config
configure.ac:65: the top level
autom4te: /usr/bin/m4 failed with exit status: 1
aclocal: error: echo failed with exit status: 1
now i have pkg-config / m4 / latest version of automake / autoconf installed...
yet it is giving this issue. Can anyone guide me as how can i get through the same ?
You're missing pkg.m4 it seems?
Check the spec files in the redhat/ directory to determine dependencies. We tested this on centos6 and I believe centos5, but I currently lack easy access to a machine to test from, so before I pursue this further, I suggest you check the spec file.
If that doesn't help, open an issue on github, as we don't generally follow stackoverflow :)
You need to install pkgconfig. On a mac, you may first need to install "mac ports" ... here is an article describing the solution:
http://www.fantageek.com/318/install-pkg-config-for-mac-osx/
Long story short. To get varnish-agent working happily on centos5 you needed to manually update automake and autoconf, which means that aclocal may not look into the right directory for pkg.m4.
Assuming you have installed pkgconfig using yum, line 22 in autogen.sh should look like this below.
aclocal -I /usr/share/aclocal
To make this a little easier, I have changed autogen.sh to include the above changes. See commit below, In addition, I have provided a Vagrantfile to illustrate how you can build a happy centos5 vm for varnish-agent. Hope this helps.
https://github.com/varnish/vagent2/commit/3921083f5fef12f06527e3361cc880121aa6b66b
XML::Parser fails to build on a quite fresh 64-bit Debian box. After issuing cpan XML::Parser, cpan fails with lots of errors about Expat.c and Expat.xs:
[...]
Expat.xs:2182: error: ‘CallbackVector’ has no member named ‘skip_until’
Expat.c: In function ‘XS_XML__Parser__Expat_Do_External_Parse’:
Expat.c:2904: error: ‘XML_Parser’ undeclared (first use in this function)
Expat.c:2904: error: expected ‘;’ before ‘parser’
Expat.xs:2194: error: ‘parser’ undeclared (first use in this function)
make[1]: *** [Expat.o] Error 1
make[1]: Leaving directory `/root/.cpan/build/XML-Parser-2.41-rpV6ok/Expat'
make: *** [subdirs] Error 2
TODDR/XML-Parser-2.41.tar.gz
/usr/bin/make -- NOT OK
Running make test
Can't test without successful make
Running make install
Make had returned bad status, install seems impossible
Message at the start of the output explains that expat-devel is needed for building.
Expat must be installed prior to building XML::Parser and I can't find
it in the standard library directories. Install 'expat-devel' package with your
OS package manager. See 'README'.
But expat-devel is not in Debian repository.
Is it possible to get over this without need to build/install expat from source?
The package you want to install is named libexpat1-dev. You could also just install libxml-parser-perl via apt-get. Or if you really want to install via CPAN try installing the Debian packages dependencies first via apt-get build-dep libxml-parser-perl.
libexpat1-dev contains both libexpat and expat.h, which are both mentioned in the message as well:
If expat is installed, but in a non-standard directory, then use the
following options to Makefile.PL:
EXPATLIBPATH=... To set the directory in which to find libexpat
EXPATINCPATH=... To set the directory in which to find expat.h
Installing libexpat1-dev seems to solve the problem:
$ aptitude install libexpat1-dev
There is always the manual method - to build/install expat from source.
(This example shows installing to an alternative location for XAMPP | LAMPP)
Download from:
http://sourceforge.net/projects/expat/files/expat/
tar zxf /[where-ever]/expat-2.1.0.tar.gz -C /tmp
cd /tmp/expat-2.1.0
/opt/lampp/bin/perl ./configure --prefix=/opt/lampp LDFLAGS=-L/opt/lampp/lib
make
make install
http://search.cpan.org - search for and download - XML::Parser
tar zxf /[where-ever]/XML-Parser-2.41.tar.gz -C /tmp
cd /tmp/XML-Parser-2.41
/opt/lampp/bin/perl ./Makefile.PL EXPATLIBPATH=/opt/lampp/lib EXPATINCPATH=/opt/lampp/include
make
make test
make install
Work like a charm in Ubuntu 15.04. The only thing that I need is install Perl XML Parser with:
sudo apt-get install libxml-parser-perl
And following the instructions here, I was able to import successfully all my ratings into Rhythmbox. Now, the only work that I need to do is create again the smart play lists, that is nothing compared with my entire libray ratings.
Today I had the same issue wanting to complile the new GIMP 2.9.4 beta on OSX 10.8 and the aid of homebrew.
First install perl
brew install perl
Then the XML::Parser module by going into the perl shell with
perl -MCPAN -e shell
And inside the shell install XML::Parser by typing
install XML::Parser
Exit shell
exit
Now, verify it has been installed successfully. If everything is ok, you will not see an error.
perl -e "require XML::Parser"
If the ./configure still fails missing XML::Parser, then intltools is not using the perl you have installed. Looking at the script tells me it does the test with $INTLTOOL_PERL -e "require XML::Parser". Trying a echo $INTLTOOL_PERL gave out nothing, so the magic is to set it with
export $INTLTOOL_PERL=perl
Now run ./configure again.
None of the above methods worked for me. I had the right environment variables setup but they were somehow not picked up by cpanm that I use to install perl modules. Expat was also installed.
Here is what I did to overcome the same problem that OP is reporting.
This is very close to what #LadyBuzz suggested.
Download the XML::Parser from cpan.org
Extract the tarball into directory and descend to it.
Open the Makefile.pl and edit the first lines to actually have the absolute paths to both: EXPATLIBPATH and EXPATINCPATH
Save the Makefile.pl, go up one level and create a new tarball with the Makefile.pl that you just edited.
Execute cpanm on the newly created tarball.
This resulted in successful installation of the module.