I would like to run Orange data miner (version 2.7) on commandline. Can someone tell me the arguments available to run Orange on commandline ?
Thanks.
This post still comes up as the top result on Google.
The correct answer is explained here:
https://github.com/biolab/orange3#starting-orange-gui
To start Orange GUI from the command line, assuming it was
successfully installed, run:
orange-canvas
# or
python3 -m Orange.canvas
Hope this helps.
If you would like to use Orange as a Python module, see http://docs.orange.biolab.si/tutorial/rst/index.html.
If not -- what did you mean by running from command line?
Related
This question already has an answer here:
In Jupyter Notebooks on Google Colab, what's the difference between using % and ! to run a shell command?
(1 answer)
Closed 1 year ago.
I know that using ! before a command in python runs the command using the terminal.
For example:
!ls
!unzip zippedfile.zip
However, I noticed that using % also works for some bash commands but not for others.
So
%ls
will work, but
%unzip
will NOT work.
What is the difference between these two prefixes?
The ! escape runs an external shell command, like ping -c 3 www.google.com, not a Python command. Python or ipython has no idea what ping does, it just passes over control to it, and displays its output.
The % escape runs an ipython built-in command or extension, i.e. something that ipython itself understands.
To quote the documentation,
User-extensible ‘magic’ commands. A set of commands prefixed with % or %% is available for controlling IPython itself and provides directory control, namespace information and many aliases to common system shell commands.
The source of confusion here is probably that e.g. ls is also available as a "magic" command for portability and convenience. (It's portable in that it works even on platforms where there is no system ls command, like Windows.)
I am trying to run the following in Jupyter notebook (with Python 2 if it makes a difference):
!head xyz.txt
and I get the following error:
'head' is not recognized as an internal or external command, operable
program or batch file.
Is there anything I need to import to be able to do this?
Might be useful for others.
Use ! followed by terminal command you want to execute. To run a shell command. E.g.,
! pip install some_package
to install the some_package.
An easier way to invoke terminal using jupyter-notebooks is to use magic function %%bash and use the jupyter cell as a terminal:
%%bash
head xyz.txt
pip install keras
git add model.h5.dvc data.dvc metrics.json
git commit -m "Second model, trained with 2000 images"
For Windows it would be %%cmd.
Write it at the beginning of the cell like this :
%%cmd
where python
myprogram "blabla" -x -y -z
You can start the cell with the magic % bash before the rest of your code. There is an example in this blog post, together with a list of some of the most useful magics.
Make sure you run your command in linux shell because there is non such command in windows.
Another option nowadays is the Jupyter kernel for Bash.
I had the same issue. Solved by running
!bash -c "head xyz.txt"
I am writing my script interactively with IPython. This is what I currently do:
write a chunk of code,
run in ipython with "run -i file_name.py".
make changes and repeat 2 until I think it is OK .
comment out the entire previous chunk.
write new chunk of code that is based on the previous one.
go back to step 2.
......
Is there more efficient way? Can I start a script from a specific line while using all the variables in current namespace?
Use ipdb ("pip install ipdb" on the command line to install it).
Suppose you want to run script "foo.py" from line 18 to 23.
You'll want to start like this:
ipdb foo.py
Now, let's jump to line 18 (i.e., ignore all the lines before the 18th):
ipdb> j 18
Next, we set a breakpoint at line 23 (we don't want to go further):
ipdb> b 23
Finally, let's execute:
ipdb> c
Job done :)
I'd personally also use the ipython notebook, but you call also use you favorite text editor and always copy out the chunk of code you want to run and use the magic command %paste to run that chunk in the ipython shell. It will take care of indentation for you.
Use the magic of %edit stuff.py (first use) and %ed -p (after the first use) and it will invoke your $EDITOR from inside of ipython. Upon exiting from the editor ipython will run the script (unless you called %ed -x). That is by far the fastest way I found to work in CLI-ipython. The notebooks are nice, but I like having a real editor for code.
(Based on lev's answer)
From the interactive shell:
%run -i -d foo.py
should then enter the debugger, and proceed with:
j <line_number>
c
etc.
EDIT: unfortunately, this seems to sort of break ipython's magic %debug command.
An IPython Notebook allows you to interactively run scripts line by line. It comes with IPython, just run:
ipython notebook
from the terminal to launch it. Its a web interface to IPython, where you can save the notebooks to *.py files by clicking save as in the settings.
Here's some more info from this video.
For something fast as well as flexible use http://qtconsole.readthedocs.io/en/stable/
It is similar to the Jupyter notebook based on your browsers (as pointed out by #agonti and #magellan88, but presumably much faster. It also has emacs style keybindings.
I use ipdb, ipython, comupled with tmux and vim and get almost IDE like features and much faster.
After I setup fish as the main shell chsh -s /usr/local/bin/fish, I've tried to use ls command in MATLAB, but I got the following error:
??? Error using ==> ls at 36
/usr/local/bin/fish: /opt/MATLAB/R2011a/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.15'
not found (required by /usr/local/bin/fish)
Someone knows why it happens? My actual solution is to reset bash as the main shell and always run fish to use it.
Matlab uses its own glibc librarires, and it's often a big mess because of that.
You can look at my answer there for one way to solve that:
GLIBCXX not found when compiling vtk example under mex
When working on a linx CShell u get the option to press the up / down arrows to select the last command/s typed or the Command Buffer. This even works on Windows.
However this is not functional when working on Solaris, to which i recently switched. I am guessing that the shell is also a CShell.
Please tell me what key combination is required to have this feature on Solaris ?
The default shell in Solaris has command history, but you can also use Bash instead, it's more user friendly. Just type 'bash' (no quotes) at the command line. You can also edit /etc/passwd to make bash your default shell.
The "official" default shell for Solaris is actually sh, the original Bourne shell (see Chapter 10 of the Advanced User Guide for Solaris for more info). If you'd like to change it to csh or tcsh—and you're not root (it's generally considered bad practice to use anything but sh as root's default)—just issue passwd -e /path/to/shell_of_your_choice <loginname>. I'm guessing this would probably look like passwd -e /bin/csh <loginname>, but you'd probably want to make sure it exists, first.
It may be that it's the Korn shell in which case try <ESC>k.
bash at least will allow you to switch modes with "set -o vi" or "set -o emacs".
Maybe you can use the !! command, to repeat the previous one.
Use "echo $SHELL" to see what your login shell is. If it's ksh or bash, try "set -o emacs". If that works, you'll be able to use ^P to go back a command. ^R lets you search for a command, ^F and ^B to move around within the command.
If you can´t change your default shell, or you just want to try out one that works, you can kick off any other shell from your command line. I recommend you tcsh, which will have good command line editing and history using the arrow keys. Type /bin/tcsh at your prompt to try it out. You can use the earlier responses to change your default shell if you like tcsh. Make sure your have the following in your $HOME/.cshrc file:
set filec
set history=1000 # or some other large number
set autologout=0 # if you are logging in remotely under your account.
I hope this helps.
You enable history temporarily if you use BASH by typing
HISTSIZE=1000
which will enable up and down keys and store 1000 commands. After termal disconnetion all history will be gone.
This works on solaris 10.
For permanent solution add these lines to ~/.bashrc
HISTSIZE=1000
HISTFILESIZE=1000