Install error for Orang3-Associate add-on on a Windows7 PC
Command:
pip install Orange3-Associate (same result from UI Options - Add-Ons)
Error:
Collecting Orange3-Associate
Using cached Orange3-Associate-0.1.1.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 20, in <module>
File "C:\cygwin64\tmp\pip-build-nzb1zehp\Orange3-Associate\setup.py", line 32, in <module>
long_description=open(path.join(path.dirname(__file__), 'README.md')).re ad(),
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\cygwin64\\tmp\\ pip-build-nzb1zehp\\Orange3-Associate\\README.md'
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in C:\cygwin64\tmp\p ip-build-nzb1zehp\Orange3-Associate
Add-ons DataFusion and Text successfully installed.
Thanks. This was a bug in Orange3-Associate 0.1.1. It is hopefully fixed in 0.1.2, already available through pip or Options | Add-ons.
Related
I want to install SCCmecfinder from CGE (bitbucket). Im in Ubuntu (18.04.2) and using conda (4.7.5) with pip to install. Is this the best way to go about it, or directly using python outside of conda be better?
(NB: I'm very new to all of this and learning on the fly with low skill level, so please explain clearly and simply.)
I created a new environment in Anaconda3/envs/SCCmecfinder, activated it and used:
pip install git+https://bitbucket.org/genomicepidemiology/sccmecfinder
this returned error code:
python setup.py egg_info" failed with error code 1 in /tmp/pip-req-build-92mzn1kf/
I followed feedback from others and used:
pip install --upgrade setuptools
retried the install instruction as above and this returned error code:
"python setup.py egg_info" failed with error code 1 in /tmp/pip-req-build-92mzn1kf/
I deactivated the environment, installed pip into it, reactivated it and retried the installation line again. New error returned - see below:
final error message:
ERROR: Complete output from command python setup.py egg_info:
ERROR: Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/sharb/anaconda3/envs/SCCmecfinder/lib/python3.7/tokenize.py", line 447, in open
buffer = _builtin_open(filename, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-req-build-pobis9bg/setup.py'
----------------------------------------
ERROR: Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-req-build-pobis9bg/
The repository at https://bitbucket.org/genomicepidemiology/sccmecfinder doesn't have setup.py so it's not pip-installable.
All files in the repository are scripts (not libraries) so just copy them to any directory in your $PATH and make them executable.
I had rasa nlu version 0.12.3 installed. I had some issues and uninstalled rasa nlu and other requirements using
pip uninstall rasa_nlu
pip uninstall -r requirements.txt
Now when I am installing rasa nlu again using pip install rasa_nlu
I see below messages in the terminal
Error processing line 1 of /Users/uername/anaconda3/lib/python3.6/site-packages/matplotlib-2.0.2-py3.6-nspkg.pth:
Traceback (most recent call last):
File "/Users/username/anaconda3/lib/python3.6/site.py", line 168, in addpackage
exec(line)
File "<string>", line 1, in <module>
File "<frozen importlib._bootstrap>", line 557, in module_from_spec
AttributeError: 'NoneType' object has no attribute 'loader'
Remainder of file ignored
There are more messages regarding installation and the final message is
Found existing installation: greenlet 0.4.12
Cannot uninstall 'greenlet'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.
And it turns out that rasa nlu is not installed. I know that the nlu is not installed because when I check the nlu version with below command
python -c "import rasa_nlu; print(rasa_nlu.__version__);"
I get error
Error processing line 1 of /Users/username/anaconda3/lib/python3.6/site-packages/matplotlib-2.0.2-py3.6-nspkg.pth:
Traceback (most recent call last):
File "/Users/username/anaconda3/lib/python3.6/site.py", line 168, in addpackage
exec(line)
File "<string>", line 1, in <module>
File "<frozen importlib._bootstrap>", line 557, in module_from_spec
AttributeError: 'NoneType' object has no attribute 'loader'
Remainder of file ignored
Traceback (most recent call last):
File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'rasa_nlu'
Turns out the problem was happening due to a distutils installed project which the pip install couldn't uninstall before installation.
So I had to use --ignore-installed
In short, below command solved the problem
sudo pip install --ignore-installed rasa_nlu
If you want to uninstall python package which is part of distutils, you can manually remove the folder from 'site-packages' folder. If it is Anaconda distribution, it will be in following folder. I suggest to cut the folder and paste it somewhere else for the backup purpose.
In windows:
C:\Users\\AppData\Local\Continuum\Anaconda3\Lib\site-packages
I'm sure Linux will have similar folder structure.
Following 2 items needs to be removed.
Folder [package version no.]
File - [package>.egg-info]
As mentioned in Rasa's official documentation, Install it with
pip3 install rasa-x --extra-index-url https://pypi.rasa.com/simple
It will install Rasa X and Rasa. It works great.
pip3 install rasa-x -U --extra-index-url https://pypi.rasa.com/simple
installation guide
I want to upgrade scipy. and I used pip install scipy --upgrade to do this, but here is error, how should I fix this?
Installing collected packages: scipy
Found existing installation: scipy 0.13.0b1
DEPRECATION: Uninstalling a distutils installed project (scipy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling scipy-0.13.0b1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/var/folders/7x/1ly_pjjd3g50632kc7mc68n00000gn/T/pip-a37H18-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/scipy-0.13.0b1-py2.7.egg-info'
Python version 2.7.10
Mac version 10.12.04
I tried to install face_recognition, then display the same problem.
sudo pip install face_recognition
try use:
sudo pip install --upgrade scipy --ignore-installed six
Can't install this package only with the PyCharm or command prompt:
Collecting socket
Using cached socket-0.5.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\ADMIN_~1\AppData\Local\Temp\pip-build-v6d_dkqz\socket\setup.py", line 2, in <module>
raise RuntimeError("Package 'socket' must not be downloaded from pypi")
RuntimeError: Package 'socket' must not be downloaded from pypi
Command "python setup.py egg_info" failed with error code 1 in C:\Users\ADMIN_~1\AppData\Local\Temp\pip-build-v6d_dkqz\socket\
Downloading package separately and installing doesn't work too.
If you open the file you downloaded, I mean setup.py, you notice it consists of a single line:
raise RuntimeError("Package 'socket' must not be downloaded from pypi")
socket module is already included in the standard library. You don't have to download anything. Just type import socket and you're all set.
I am having trouble running a virtualenv, and I keep getting this same error code: "setuptools pip wheel failed with error code 1"
I saw some pages talking about how this is a discrepancy between different versions of setuptools, but I've uninstalled and reinstalled virtualenv and setuptools in several versions to no results. Does anyone know what's happening here?
Roberts-MacBook-Air:script Rob$ virtualenv venv
New python executable in venv/bin/python
Installing setuptools, pip, wheel...
Complete output from command /Users/Rob/Seedstages/script/venv/bin/python -c "import sys, pip; sys...d\"] + sys.argv[1:]))" setuptools pip wheel:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv_support/pip-7.1.2-py2.py3-none-any.whl/pip/__init__.py", line 13, in <module>
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv_support/pip-7.1.2-py2.py3-none-any.whl/pip/utils/__init__.py", line 15, in <module>
File "/Users/Rob/anaconda/lib/python2.7/zipfile.py", line 6, in <module>
import io
File "/Users/Rob/anaconda/lib/python2.7/io.py", line 51, in <module>
import _io
ImportError: dlopen(/Users/Rob/Seedstages/script/venv/lib/python2.7/lib-dynload/_io.so, 2): Symbol not found: __PyErr_ReplaceException
Referenced from: /Users/Rob/Seedstages/script/venv/lib/python2.7/lib-dynload/_io.so
Expected in: dynamic lookup
----------------------------------------
...Installing setuptools, pip, wheel...done.
Traceback (most recent call last):
File "/Users/Rob/anaconda/bin/virtualenv", line 11, in <module>
sys.exit(main())
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 832, in main
symlink=options.symlink)
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 1004, in create_environment
install_wheel(to_install, py_executable, search_dirs)
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 969, in install_wheel
'PIP_NO_INDEX': '1'
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 910, in call_subprocess
% (cmd_desc, proc.returncode))
OSError: Command /Users/Rob/Seedstages/script/venv/bin/python -c "import sys, pip; sys...d\"] + sys.argv[1:]))" setuptools pip wheel failed with error code 1
Roberts-MacBook-Air:script Rob$
I would say that Anaconda causes the conflict, though to be more specific, it appears as if Anaconda's virtualenv is the problem. Running which virtualenv on my macbook (where I'm having the same problem) yields /Users/me/anaconda/bin/virtualenv while running it on the linux system I just tested this on yields /usr/local/bin/virtualenv.
So, on OS X, I downloaded virtualenv using /usr/local/bin/pip install virtualenv. This doesn't create a virtualenv binary (or it didn't for me) in the PATH folders, so I had to type this painfully long command:
sudo /usr/local/bin/python ... {the path to virtualenv.py in the system python's site-packages folder} new_env
And that did it. But that's ridiculous. No one wants to do that - even creating links would still be hacking it when you don't need to.
According to the ContinuumIO github page on this very subject, the virtualenv env and source /bin/activate commands are replaced with conda create -n env python=2.7 and source activate env.
Tested on my macbook (running Anaconda2 v4 on OS Yosemite) and it worked out.