I want to upgrade scipy. and I used pip install scipy --upgrade to do this, but here is error, how should I fix this?
Installing collected packages: scipy
Found existing installation: scipy 0.13.0b1
DEPRECATION: Uninstalling a distutils installed project (scipy) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project.
Uninstalling scipy-0.13.0b1:
Exception:
Traceback (most recent call last):
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/commands/install.py", line 342, in run
prefix=options.prefix_path,
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_set.py", line 778, in install
requirement.uninstall(auto_confirm=True)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_install.py", line 754, in uninstall
paths_to_remove.remove(auto_confirm)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/req/req_uninstall.py", line 115, in remove
renames(path, new_path)
File "/Library/Python/2.7/site-packages/pip-9.0.1-py2.7.egg/pip/utils/__init__.py", line 267, in renames
shutil.move(old, new)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 302, in move
copy2(src, real_dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 131, in copy2
copystat(src, dst)
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/shutil.py", line 103, in copystat
os.chflags(dst, st.st_flags)
OSError: [Errno 1] Operation not permitted: '/var/folders/7x/1ly_pjjd3g50632kc7mc68n00000gn/T/pip-a37H18-uninstall/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/scipy-0.13.0b1-py2.7.egg-info'
Python version 2.7.10
Mac version 10.12.04
I tried to install face_recognition, then display the same problem.
sudo pip install face_recognition
try use:
sudo pip install --upgrade scipy --ignore-installed six
Related
I had rasa nlu version 0.12.3 installed. I had some issues and uninstalled rasa nlu and other requirements using
pip uninstall rasa_nlu
pip uninstall -r requirements.txt
Now when I am installing rasa nlu again using pip install rasa_nlu
I see below messages in the terminal
Error processing line 1 of /Users/uername/anaconda3/lib/python3.6/site-packages/matplotlib-2.0.2-py3.6-nspkg.pth:
Traceback (most recent call last):
File "/Users/username/anaconda3/lib/python3.6/site.py", line 168, in addpackage
exec(line)
File "<string>", line 1, in <module>
File "<frozen importlib._bootstrap>", line 557, in module_from_spec
AttributeError: 'NoneType' object has no attribute 'loader'
Remainder of file ignored
There are more messages regarding installation and the final message is
Found existing installation: greenlet 0.4.12
Cannot uninstall 'greenlet'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.
And it turns out that rasa nlu is not installed. I know that the nlu is not installed because when I check the nlu version with below command
python -c "import rasa_nlu; print(rasa_nlu.__version__);"
I get error
Error processing line 1 of /Users/username/anaconda3/lib/python3.6/site-packages/matplotlib-2.0.2-py3.6-nspkg.pth:
Traceback (most recent call last):
File "/Users/username/anaconda3/lib/python3.6/site.py", line 168, in addpackage
exec(line)
File "<string>", line 1, in <module>
File "<frozen importlib._bootstrap>", line 557, in module_from_spec
AttributeError: 'NoneType' object has no attribute 'loader'
Remainder of file ignored
Traceback (most recent call last):
File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'rasa_nlu'
Turns out the problem was happening due to a distutils installed project which the pip install couldn't uninstall before installation.
So I had to use --ignore-installed
In short, below command solved the problem
sudo pip install --ignore-installed rasa_nlu
If you want to uninstall python package which is part of distutils, you can manually remove the folder from 'site-packages' folder. If it is Anaconda distribution, it will be in following folder. I suggest to cut the folder and paste it somewhere else for the backup purpose.
In windows:
C:\Users\\AppData\Local\Continuum\Anaconda3\Lib\site-packages
I'm sure Linux will have similar folder structure.
Following 2 items needs to be removed.
Folder [package version no.]
File - [package>.egg-info]
As mentioned in Rasa's official documentation, Install it with
pip3 install rasa-x --extra-index-url https://pypi.rasa.com/simple
It will install Rasa X and Rasa. It works great.
pip3 install rasa-x -U --extra-index-url https://pypi.rasa.com/simple
installation guide
Install error for Orang3-Associate add-on on a Windows7 PC
Command:
pip install Orange3-Associate (same result from UI Options - Add-Ons)
Error:
Collecting Orange3-Associate
Using cached Orange3-Associate-0.1.1.tar.gz
Complete output from command python setup.py egg_info:
Traceback (most recent call last):
File "<string>", line 20, in <module>
File "C:\cygwin64\tmp\pip-build-nzb1zehp\Orange3-Associate\setup.py", line 32, in <module>
long_description=open(path.join(path.dirname(__file__), 'README.md')).re ad(),
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\cygwin64\\tmp\\ pip-build-nzb1zehp\\Orange3-Associate\\README.md'
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in C:\cygwin64\tmp\p ip-build-nzb1zehp\Orange3-Associate
Add-ons DataFusion and Text successfully installed.
Thanks. This was a bug in Orange3-Associate 0.1.1. It is hopefully fixed in 0.1.2, already available through pip or Options | Add-ons.
I am having trouble running a virtualenv, and I keep getting this same error code: "setuptools pip wheel failed with error code 1"
I saw some pages talking about how this is a discrepancy between different versions of setuptools, but I've uninstalled and reinstalled virtualenv and setuptools in several versions to no results. Does anyone know what's happening here?
Roberts-MacBook-Air:script Rob$ virtualenv venv
New python executable in venv/bin/python
Installing setuptools, pip, wheel...
Complete output from command /Users/Rob/Seedstages/script/venv/bin/python -c "import sys, pip; sys...d\"] + sys.argv[1:]))" setuptools pip wheel:
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv_support/pip-7.1.2-py2.py3-none-any.whl/pip/__init__.py", line 13, in <module>
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv_support/pip-7.1.2-py2.py3-none-any.whl/pip/utils/__init__.py", line 15, in <module>
File "/Users/Rob/anaconda/lib/python2.7/zipfile.py", line 6, in <module>
import io
File "/Users/Rob/anaconda/lib/python2.7/io.py", line 51, in <module>
import _io
ImportError: dlopen(/Users/Rob/Seedstages/script/venv/lib/python2.7/lib-dynload/_io.so, 2): Symbol not found: __PyErr_ReplaceException
Referenced from: /Users/Rob/Seedstages/script/venv/lib/python2.7/lib-dynload/_io.so
Expected in: dynamic lookup
----------------------------------------
...Installing setuptools, pip, wheel...done.
Traceback (most recent call last):
File "/Users/Rob/anaconda/bin/virtualenv", line 11, in <module>
sys.exit(main())
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 832, in main
symlink=options.symlink)
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 1004, in create_environment
install_wheel(to_install, py_executable, search_dirs)
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 969, in install_wheel
'PIP_NO_INDEX': '1'
File "/Users/Rob/anaconda/lib/python2.7/site-packages/virtualenv.py", line 910, in call_subprocess
% (cmd_desc, proc.returncode))
OSError: Command /Users/Rob/Seedstages/script/venv/bin/python -c "import sys, pip; sys...d\"] + sys.argv[1:]))" setuptools pip wheel failed with error code 1
Roberts-MacBook-Air:script Rob$
I would say that Anaconda causes the conflict, though to be more specific, it appears as if Anaconda's virtualenv is the problem. Running which virtualenv on my macbook (where I'm having the same problem) yields /Users/me/anaconda/bin/virtualenv while running it on the linux system I just tested this on yields /usr/local/bin/virtualenv.
So, on OS X, I downloaded virtualenv using /usr/local/bin/pip install virtualenv. This doesn't create a virtualenv binary (or it didn't for me) in the PATH folders, so I had to type this painfully long command:
sudo /usr/local/bin/python ... {the path to virtualenv.py in the system python's site-packages folder} new_env
And that did it. But that's ridiculous. No one wants to do that - even creating links would still be hacking it when you don't need to.
According to the ContinuumIO github page on this very subject, the virtualenv env and source /bin/activate commands are replaced with conda create -n env python=2.7 and source activate env.
Tested on my macbook (running Anaconda2 v4 on OS Yosemite) and it worked out.
I have already updated tornado using
sudo pip install --upgrade tornado
Checking the current version show that I already have a version later than 4.0
Find the output of command:
pip show tornado | grep Version
Metadata-Version: 1.1
Version: 4.1
Any idea why Ipython notebook does not work and keeps giving me the message that i do not have tornado v4.1 and have version 3.0 instead ?. Thanks and Regards.
=========================================================================
$ipython notebook
Traceback (most recent call last):
File "/usr/local/bin/ipython", line 11, in <module>
sys.exit(start_ipython())
File "/usr/local/lib/python2.7/dist-packages/IPython/__init__.py", line 120, in start_ipython
return launch_new_instance(argv=argv, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 573, in launch_instance
app.initialize(argv)
File "<string>", line 2, in initialize
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 75, in catch_config_error
return method(app, *args, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/IPython/terminal/ipapp.py", line 321, in initialize
super(TerminalIPythonApp, self).initialize(argv)
File "<string>", line 2, in initialize
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 75, in catch_config_error
return method(app, *args, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/IPython/core/application.py", line 369, in initialize
self.parse_command_line(argv)
File "/usr/local/lib/python2.7/dist-packages/IPython/terminal/ipapp.py", line 316, in parse_command_line
return super(TerminalIPythonApp, self).parse_command_line(argv)
File "<string>", line 2, in parse_command_line
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 75, in catch_config_error
return method(app, *args, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 471, in parse_command_line
return self.initialize_subcommand(subc, subargv)
File "<string>", line 2, in initialize_subcommand
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 75, in catch_config_error
return method(app, *args, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/IPython/config/application.py", line 402, in initialize_subcommand
subapp = import_item(subapp)
File "/usr/local/lib/python2.7/dist-packages/IPython/utils/importstring.py", line 42, in import_item
module = __import__(package, fromlist=[obj])
File "/usr/local/lib/python2.7/dist-packages/IPython/html/notebookapp.py", line 50, in <module>
raise ImportError(msg + ", but you have %s" % tornado.version)
ImportError: The IPython Notebook requires tornado >= 4.0, but you have 3.2
I had a conflicting copy of tornado (3.1.1 on ubuntu 14.04) as well. To see if this is the case for you, in a terminal use the commands:
apt-cache policy python-tornado
To print out the OS's version. If it is not the version you want, use:
sudo apt-get remove python-tornado
to remove it. If you had already installed the newer version using pip, that version will be visible to python now.
Maybe have many pip and many Python's. Check your pip version
pip --version
(my response) pip 1.5.4 from /usr/lib/python2.7/dist-packages (python 2.7)
and check you IPython environment:
~$ ipython3
Python 3.4.0 (default, Apr 11 2014, 13:05:11)
Type "copyright", "credits" or "license" for more information.
IPython 1.2.1 -- An enhanced Interactive Python.
If environ version are the same. Try make new environ on virtualenv
I have noticed that there were two Tornado packages installed on my system(Ubuntu 14.04). A Tornado 4.1 version and Tornado 3.2 version under different folders. In order to solve the problem, i renamed the folder containing the old Tornado to "Tornado-OLD".
Now Ipython Notebook is able to find the right Tornado and open on the browser.
I am not sure how it happened to have 2 versions of Torando installed, at the same time. But if you have the problem, this can probably help you.
Thanks for the contributions.
Regards
Gustavo
Maybe you can try:
sudo apt-get remove tornado
sudo pip uninstall tornado
sudo pip install tornado
The following worked for me:
Remove tornado:
sudo apt-get remove python-tornado
Reinstall tornado:
sudo pip install tornado
Upgrade tornado:
sudo pip install tornado --upgrade
I build a development environment using vagrant and virtualenv/virtualenvwrapper. Recently, my vagrant box stopped provisioning correctly. It seems virtualenvwrapper won't install anymore. I am trying to trace down what has changed. What has changed?
My Vagrantfile and install.sh files are here: https://gist.github.com/ErikEvenson/9763878. Note that this error happens on the web box.
This is the error I get when I try to install virtualenvwrapper:
vagrant#vagrant-ubuntu-precise-64:~$ pip install virtualenvwrapper
Downloading/unpacking virtualenvwrapper
Downloading virtualenvwrapper-4.2.tar.gz (125Kb): 125Kb downloaded
Running setup.py egg_info for package virtualenvwrapper
Installed /home/vagrant/build/virtualenvwrapper/pbr-0.7.0-py2.7.egg
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/home/vagrant/build/virtualenvwrapper/setup.py", line 7, in <module>
pbr=True,
File "/usr/lib/python2.7/distutils/core.py", line 112, in setup
_setup_distribution = dist = klass(attrs)
File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 221, in __init__
self.fetch_build_eggs(attrs.pop('setup_requires'))
File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 245, in fetch_build_eggs
parse_requirements(requires), installer=self.fetch_build_egg
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 588, in resolve
raise VersionConflict(dist,req) # XXX put more info here
pkg_resources.VersionConflict: (pip 1.0 (/usr/lib/python2.7/dist-packages), Requirement.parse('pip>=1.4'))
Complete output from command python setup.py egg_info:
Installed /home/vagrant/build/virtualenvwrapper/pbr-0.7.0-py2.7.egg
Traceback (most recent call last):
File "<string>", line 14, in <module>
File "/home/vagrant/build/virtualenvwrapper/setup.py", line 7, in <module>
pbr=True,
File "/usr/lib/python2.7/distutils/core.py", line 112, in setup
_setup_distribution = dist = klass(attrs)
File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 221, in __init__
self.fetch_build_eggs(attrs.pop('setup_requires'))
File "/usr/lib/python2.7/dist-packages/setuptools/dist.py", line 245, in fetch_build_eggs
parse_requirements(requires), installer=self.fetch_build_egg
File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 588, in resolve
raise VersionConflict(dist,req) # XXX put more info here
pkg_resources.VersionConflict: (pip 1.0 (/usr/lib/python2.7/dist-packages), Requirement.parse('pip>=1.4'))
----------------------------------------
Command python setup.py egg_info failed with error code 1
Storing complete log in /home/vagrant/.pip/pip.log
Erik, while your answer may work it's not necessary I don't think. Have you tried apt-get install virtualenvwrapper?
The reason I ask is that ubuntu already has you "sudo apt-get install python-virtualenv" (which also installs python-pip), and I had no problem also apt-get install'ing virtualenvwrapper. The only difference is you have to "source /etc/bash_completion.d/virtualenvwrapper" in your bashrc instead of /usr/local/bin/virtualenvwrapper.sh.
You can still try back your way out of what you've done (don't blame me if it doesn't work though!):
$ sudo apt-get uninstall python-pip
$ sudo apt-get install python-pip
$ sudo pip uninstall virtualenvwrapper
$ sudo apt-get install virtualenvwrapper
then add source /etc/bash_completion.d/virtualenvwrapper to ~/.bashrc
Something like that. Good luck!
Running pip install --upgrade pip after doing apt-get install python-pip seems to have done the trick. This bring pip up to 1.5.4 and avoids the error above. Also, be sure to use /user/local/bin/pip for the rest of the provisioning script.
I'm not sure what changed to make my provisioning dependent on pip > 1.0 though. Would be nice to know so that I can lock that dependency down.
You can try
sudo apt-get install python-virtualenv virtualenwrapper.