In MATLAB, how do you tell where in the code a variable is getting output?
I have about 10K lines of MATLAB code with about 4 people working on it. Somewhere, someone has dumped a variable in a MATLAB script in the typical way:
foo
Unfortunately, I do not know what variable is getting output. And the output is cluttering out other more important outputs.
Any ideas?
p.s. Anyone ever try overwriting Standard.out? Since MATLAB and Java integration is so tight, would that work? A trick I've used in Java when faced with this problem is to replace Standard.out with my own version.
Ooh, I hate this too. I wish Matlab had a "dbstop if display" to stop on exactly this.
The mlint traversal from weiyin is a good idea. Mlint can't see dynamic code, though, such as arguments to eval() or string-valued figure handle callbacks. I've run in to output like this in callbacks like this, where update_table() returns something in some conditions.
uicontrol('Style','pushbutton', 'Callback','update_table')
You can "duck-punch" a method in to built-in types to give you a hook for dbstop. In a directory on your Matlab path, create a new directory named "#double", and make a #double/display.m file like this.
function display(varargin)
builtin('display', varargin{:});
Then you can do
dbstop in double/display at 2
and run your code. Now you'll be dropped in to the debugger whenever display is implicitly called by the omitted semicolon, including from dynamic code. Doing it for #double seems to cover char and cells as well. If it's a different type being displayed, you may have to experiment.
You could probably override the built-in disp() the same way. I think this would be analagous to a custom replacement for Java's System.out stream.
Needless to say, adding methods to built-in types is nonstandard, unsupported, very error-prone, and something to be very wary of outside a debugging session.
This is a typical pattern that mLint will help you find:
So, look on the right hand side of the editor for the orange lines. This will help you find not only this optimization, but many, many more. Notice also that your variable name is highlighted.
If you have a line such as:
foo = 2
and there is no ";" on the end, then the output will be dumped to the screen with the variable name appearing first:
foo =
2
In this case, you should search the file for the string "foo =" and find the line missing a ";".
If you are seeing output with no variable name appearing, then the output is probably being dumped to the screen using either the DISP or FPRINTF function. Searching the file for "disp" or "fprintf" should help you find where the data is being displayed.
If you are seeing output with the variable name "ans" appearing, this is a case when a computation is being done, not being put in a variable, and is missing a ';' at the end of the line, such as:
size(foo)
In general, this is a bad practice for displaying what's going on in the code, since (as you have found out) it can be hard to find where these have been placed in a large piece of code. In this case, the easiest way to find the offending line is to use MLINT, as other answers have suggested.
I like the idea of "dbstop if display", however this is not a dbstop option that i know of.
If all else fails, there is still hope. Mlint is a good idea, but if there are many thousands of lines and many functions, then you may never find the offender. Worse, if this code has been sloppily written, there will be zillions of mlint flags that appear. How will you narrow it down?
A solution is to display your way there. I would overload the display function. Only temporarily, but this will work. If the output is being dumped to the command line as
ans =
stuff
or as
foo =
stuff
Then it has been written out with display. If it is coming out as just
stuff
then disp is the culprit. Why does it matter? Overload the offender. Create a new directory in some directory that is on top of your MATLAB search path, called #double (assuming that the output is a double variable. If it is character, then you will need an #char directory.) Do NOT put the #double directory itself on the MATLAB search path, just put it in some directory that is on your path.
Inside this directory, put a new m-file called disp.m or display.m, depending upon your determination of what has done the command line output. The contents of the m-file will be a call to the function builtin, which will allow you to then call the builtin version of disp or display on the input.
Now, set a debugging point inside the new function. Every time output is generated to the screen, this function will be called. If there are multiple events, you may need to use the debugger to allow processing to proceed until the offender has been trapped. Eventually, this process will trap the offensive line. Remember, you are in the debugger! Use the debugger to determine which function called disp, and where. You can step out of disp or display, or just look at the contents of dbstack to see what has happened.
When all is done and the problem repaired, delete this extra directory, and the disp/display function you put in it.
You could run mlint as a function and interpret the results.
>> I = mlint('filename','-struct');
>> isErrorMessage = arrayfun(#(S)strcmp(S.message,...
'Terminate statement with semicolon to suppress output (in functions).'),I);
>>I(isErrorMessage ).line
This will only find missing semicolons in that single file. So this would have to be run on a list of files (functions) that are called from some main function.
If you wanted to find calls to disp() or fprintf() you would need to read in the text of the file and use regular expresions to find the calls.
Note: If you are using a script instead of a function you will need to change the above message to read: 'Terminate statement with semicolon to suppress output (in scripts).'
Andrew Janke's overloading is a very useful tip
the only other thing is instead of using dbstop I find the following works better, for the simple reason that putting a stop in display.m will cause execution to pause, every time display.m is called, even if nothing is written.
This way, the stop will only be triggered when display is called to write a non null string, and you won't have to step through a potentially very large number of useless display calls
function display(varargin)
builtin('display', varargin{:});
if isempty(varargin{1})==0
keyboard
end
A foolproof way of locating such things is to iteratively step through the code in the debugger observing the output. This would proceed as follows:
Add a break point at the first line of the highest level script/function which produces the undesired output. Run the function/script.
step over the lines (not stepping in) until you see the undesired output.
When you find the line/function which produces the output, either fix it, if it's in this file, or open the subfunction/script which is producing the output. Remove the break point from the higher level function, and put a break point in the first line of the lower-level function. Repeat from step 1 until the line producing the output is located.
Although a pain, you will find the line relatively quickly this way unless you have huge functions/scripts, which is bad practice anyway. If the scripts are like this you could use a sort of partitioning approach to locate the line in the function in a similar manner. This would involve putting a break point at the start, then one half way though and noting which half of the function produces the output, then halving again and so on until the line is located.
I had this problem with much smaller code and it's a bugger, so even though the OP found their solution, I'll post a small cheat I learned.
1) In the Matlab command prompt, turn on 'more'.
more on
2) Resize the prompt-y/terminal-y part of the window to a mere line of text in height.
3) Run the code. It will stop wherever it needed to print, as there isn't the space to print it ( more is blocking on a [space] or [down] press ).
4) Press [ctrl]-[C] to kill your program at the spot where it couldn't print.
5) Return your prompt-y area to normal size. Starting at the top of trace, click on the clickable bits in the red text. These are your potential culprits. (Of course, you may need to have pressed [down], etc, to pass parts where the code was actually intended to print things.)
You'll need to traverse all your m-files (probably using a recursive function, or unix('find -type f -iname *.m') ). Call mlint on each filename:
r = mlint(filename);
r will be a (possibly empty) structure with a message field. Look for the message that starts with "Terminate statement with semicolon to suppress output".
I have a problem. I want to execute some commands in the Commandline of linux. I tested TProcess (So i am using Lazarus) but now when i am starting the programm, there is nothing, wich the Program do.
Here is my Code:
uses [...], unix, process;
[...]
var LE_Path: TLabeledEdit;
[...]
Pro1:=TProcess.Create(nil);
Pro1.CommandLine:=(('sudo open'+LE_Path.Text));
Pro1.Options := Pro1.Options; //Here i used Options before
Pro1.Execute;
With this Program, i want to open Files with sudo (The Programm is running on the User Interface)
->Sorry for my Bad English; Sorry for fails in the Question: I am using StackOverflow the first time.
I guess the solution was a missing space char?
Change
Pro1.CommandLine:=(('sudo open'+LE_Path.Text));
to
Pro1.CommandLine:=(('sudo open '+LE_Path.Text));
# ----------------------------^--- added this space char.
But if you're a beginner programmer, my other comments are still worth considering:
trying to use sudo in your first bit of code may be adding a whole extra set of problems. SO... Get something easier to work first, maybe
/bin/ls -l /path/to/some/dir/that/has/only/a/few/files.
find out how to print a statement that will be executed. This is the most basic form of debugging and any language should support that.
Your english communicated your problem well enough, and by including sample code and reasonable (not perfect) problem description "we" were able to help you. In general, a good question contains the fewest number of steps to re-create the problem. OR, if you're trying to manipulate data,
a. small sample input,
b. sample output from that same input
c. your "best" code you have tried
d. your current output
e. your thoughts about why it is not working
AND comments to indicate generally other things you have tried.
Clearly, there is something wrong with my understanding of brainfuck, or there's something wrong with bf interpreter on ideone.com.
By entering code as simple as ,.,. (reads two characters and prints them), I get an error "bff: out of memory (871638280)" . Why do I get this ?
NOTE: The true problem is that I'm trying to solve a problem on SPOJ, and some code that works on brainfuck interpreters that I found across the internet, doesn't work on SPOJ and ideone.com.
It appears to work fine, my BF torture test runs properly.
ideone.com 9fQ2Ej
I am NOT going to try to fight this UI to make the BF look correct!
It's here:
https://github.com/rdebath/Brainfuck/blob/master/bitwidth.b
It does appear to have a large cells size though and isn't fast enough to offset this.
EDIT: (No newlines below Grrr)
Anyway Daniel Christofani's end test:
,>+++++++++,>+++++++++++[<++++++<++++++<+>>>-]<<.>.<<-.>.>.<<.
Gives 'LA' showing that the program accepts input successfully, gives the correct character for newline and gives '-1' for end of file. As it's a big cell interpreter this is perfectly acceptable.
HOWEVER; I do see your point, there's something weird going on I suggest you try one of the javaScript implementations. They run in your browser.
http://t-monster.com/apps/brainfuck_IDE
http://www.iwriteiam.nl/Ha_bf_online.html
http://brainfuck.devbar.de/
I have a lot of if statements throughout my code and was wondering if there is anyway in Matlab to see which if statements are being used when I run my code. I know I could put variables throughout my code and see which ones are being triggered, but I was wondering if there is an easier way. Maybe a built in MATLAB function or something.
Thanks
Type profile viewer in the command line of matlab and execute your code from there. There you can see in the profile report how many times each line is called as well as how long it takes executing the line of code.
More information:
http://www.mathworks.nl/help/matlab/ref/profile.html
http://www.mathworks.nl/help/matlab/matlab_prog/profiling-for-improving-performance.html
To answer precesely to your question, there is a command to log every line the execution is going through. And if you're familiar with unix-like platform, it is the same command: echo. See the Matlab help of echo to see how you can use it. For example, echo on all sets echoing on for all function files.
Besides that, I advise you two things better than analysing the output of echoing a whole script:
look at every warning in the code editor, and apply meaningful corrections.
use the profiler of matlab, as stated in the answer from EJG89, it is indeed a powerful tool!
I am using Devel::LeakTrace::Fast to debug a memory leak in a perl script designed as a daemon which runs an infinite loop with sleeps until interrupted. I am having some trouble both reading the output and finding documentation to help me understand the output. The perldoc doesn't contain much information on the output. Most of it makes sense, such as pointing to globals in DBI. Intermingled with the output, however, are several
leaked SV(<LOCATION>) from (eval #) line #
Where the numbers are numbers and <LOCATION> is a location in memory. The script itself is not using eval at any point - I have not investigated each used module to see if evals are present. Mostly what I want to know is how to find these evals (if possible).
I also find the following entries repeated over and over again
leaked SV(<LOCATION>) from line #
Where line # is always the same #. Not very helpful in tracking down what file that line is in.
You may not be using eval anywhere directly, but some module you are using likely is. Additionally, there could be a problem in some XS code you are linking into.
Have you tried reducing your script bit by bit, cutting out parts that you think might be suspect (or even parts that you think are not), and seeing how your results change? If you can split your script up into discrete pieces (which is a good idea to do anyway, from an architectural and maintainability standpoint), you might be able to find which area is the culprit, and then drill down from there.