What is the activation function used by self organizing map? Is it the same sigmoid or tansig activation.
Self organizing maps are a bit different from standard ANNs, for starters it's unsupervised. It works by assigning weights with the same dimensionality as the input data to each node in a low-dimensional map. You then train the map by adjusting these weight to the input data, which eventually creates regions on the map dependent on the structure of the data. In that sense it does not have an activation function, it's really just based on calculating euclidian space and adjusting weights. See here for a great walkthrough.
The activation function for individual neurons is a pure linear function i.e. f(net)=net. SOM then uses a competitive transfer function that works over entire layer ( called 'compete()' in MATLAB). This Transfer functions calculate a layer’s output from its net inputs. It returns 1 for the maximum output and 0 elsewhere.
The following snapshot is taken from MATLAB help documentation for ready reference. The details can be found on this link: https://in.mathworks.com/help/deeplearning/ref/compet.html
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I have been experimenting with neural networks these days. I have come across a general question regarding the activation function to use. This might be a well known fact to but I couldn't understand properly. A lot of the examples and papers I have seen are working on classification problems and they either use sigmoid (in binary case) or softmax (in multi-class case) as the activation function in the out put layer and it makes sense. But I haven't seen any activation function used in the output layer of a regression model.
So my question is that is it by choice we don't use any activation function in the output layer of a regression model as we don't want the activation function to limit or put restrictions on the value. The output value can be any number and as big as thousands so the activation function like sigmoid to tanh won't make sense. Or is there any other reason? Or we actually can use some activation function which are made for these kind of problems?
for linear regression type of problem, you can simply create the Output layer without any activation function as we are interested in numerical values without any transformation.
more info :
https://machinelearningmastery.com/regression-tutorial-keras-deep-learning-library-python/
for classification :
You can use sigmoid, tanh, Softmax etc.
If you have, say, a Sigmoid as an activation function in output layer of your NN you will never get any value less than 0 and greater than 1.
Basically if the data your're trying to predict are distributed within that range you might approach with a Sigmoid function and test if your prediction performs well on your training set.
Even more general, when predict a data you should come up with the function that represents your data in the most effective way.
Hence if your real data does not fit Sigmoid function well you have to think of any other function (e.g. some polynomial function, or periodic function or any other or a combination of them) but you also should always care of how easily you will build your cost function and evaluate derivatives.
Just use a linear activation function without limiting the output value range unless you have some reasonable assumption about it.
I am learning to build neural networks for regression problems. It works well approximating linear functions. Setup with 1-5–1 units with linear activation functions in hidden and output layers does the trick and results are fast and reliable. However, when I try to feed it simple quadratic data (f(x) = x*x) here is what happens:
With linear activation function, it tries to fit a linear function through dataset
And with TANH function it tries to fit a a TANH curve through the dataset.
This makes me believe that the current setup is inherently unable to learn anything but a linear relation, since it's repeating the shape of activation function on the chart. But this may not be true because I've seen other implementations learn curves just perfectly. So I may be doing something wrong. Please provide your guidance.
About my code
My weights are randomized (-1, 1) inputs are not normalized. Dataset is fed in random order. Changing learning rate or adding layers, does not change the picture much.
I've created a jsfiddle,
the place to play with is this function:
function trainingSample(n) {
return [[n], [n]];
}
It produces a single training sample: an array of an input vector array and a target vector array.
In this example it produces an f(x)=x function. Modify it to be [[n], [n*n]] and you've got a quadratic function.
The play button is at the upper right, and there also are two input boxes to manually input these values. If target (right) box is left empty, you can test the output of the network by feedforward only.
There is also a configuration file for the network in the code, where you can set learning rate and other things. (Search for var Config)
It's occurred to me that in the setup I am describing, it is impossible to learn non–linear functions, because of the choice of features. Nowhere in forward pass we have input dependency of power higher than 1, that's why I am seeing a snapshot of my activation function in the output. Duh.
I'm trying to create a sample neural network that can be used for credit scoring. Since this is a complicated structure for me, i'm trying to learn them small first.
I created a network using back propagation - input layer (2 nodes), 1 hidden layer (2 nodes +1 bias), output layer (1 node), which makes use of sigmoid as activation function for all layers. I'm trying to test it first using a^2+b2^2=c^2 which means my input would be a and b, and the target output would be c.
My problem is that my input and target output values are real numbers which can range from (-/infty, +/infty). So when I'm passing these values to my network, my error function would be something like (target- network output). Would that be correct or accurate? In the sense that I'm getting the difference between the network output (which is ranged from 0 to 1) and the target output (which is a large number).
I've read that the solution would be to normalise first, but I'm not really sure how to do this. Should i normalise both the input and target output values before feeding them to the network? What normalisation function is best to use cause I read different methods in normalising. After getting the optimized weights and use them to test some data, Im getting an output value between 0 and 1 because of the sigmoid function. Should i revert the computed values to the un-normalized/original form/value? Or should i only normalise the target output and not the input values? This really got me stuck for weeks as I'm not getting the desired outcome and not sure how to incorporate the normalisation idea in my training algorithm and testing..
Thank you very much!!
So to answer your questions :
Sigmoid function is squashing its input to interval (0, 1). It's usually useful in classification task because you can interpret its output as a probability of a certain class. Your network performes regression task (you need to approximate real valued function) - so it's better to set a linear function as an activation from your last hidden layer (in your case also first :) ).
I would advise you not to use sigmoid function as an activation function in your hidden layers. It's much better to use tanh or relu nolinearities. The detailed explaination (as well as some useful tips if you want to keep sigmoid as your activation) might be found here.
It's also important to understand that architecture of your network is not suitable for a task which you are trying to solve. You can learn a little bit of what different networks might learn here.
In case of normalization : the main reason why you should normalize your data is to not giving any spourius prior knowledge to your network. Consider two variables : age and income. First one varies from e.g. 5 to 90. Second one varies from e.g. 1000 to 100000. The mean absolute value is much bigger for income than for age so due to linear tranformations in your model - ANN is treating income as more important at the beginning of your training (because of random initialization). Now consider that you are trying to solve a task where you need to classify if a person given has grey hair :) Is income truly more important variable for this task?
There are a lot of rules of thumb on how you should normalize your input data. One is to squash all inputs to [0, 1] interval. Another is to make every variable to have mean = 0 and sd = 1. I usually use second method when the distribiution of a given variable is similiar to Normal Distribiution and first - in other cases.
When it comes to normalize the output it's usually also useful to normalize it when you are solving regression task (especially in multiple regression case) but it's not so crucial as in input case.
You should remember to keep parameters needed to restore the original size of your inputs and outputs. You should also remember to compute them only on a training set and apply it on both training, test and validation sets.
I am trying to make a simple radial basis function network (RBFN) for regression. I have a 20 dimensional (feature) dataset with over 600 samples. I need the final network to output 1 scalar value for each 20 dimensional sample.
Note: new to machine learning...and feel like I am missing an important concept here.
With the perceptron we can, and I have, trained a linear network until the prediction error is at a minimum using a small subset of the initial samples.
Is there a similar process with the RBFN?
Yes there is,
The main two differences between a multi-layer perceptron and a RBFN are the fact that a RBFN usually implies just one layer and that the activation function is a gaussian instead of a sigmoid.
The training phase can be done using gradient descend of the error loss function, so it is relatively simple to implement.
Keep in mind that RBFN is a linear combination of RBF units, so the range of the output is limited and you would need to transform it if you need an scalar outside of that range.
There is a few of resources that you could consult as reference:
[PDF] (http://scholar.lib.vt.edu/theses/available/etd-6197-223641/unrestricted/Ch3.pdf)
[Wikipedia] (http://en.wikipedia.org/wiki/Radial_basis_function_network)
[Wolfram] (http://reference.wolfram.com/applications/neuralnetworks/NeuralNetworkTheory/2.5.2.html)
Hope it helps,
I am new to using Matlab and am trying to follow the example in the Bioinformatics Toolbox documentation (SVM Classification with Cross Validation) to handle a classification problem.
However, I am not able to understand Step 9, which says:
Set up a function that takes an input z=[rbf_sigma,boxconstraint], and returns the cross-validation value of exp(z).
The reason to take exp(z) is twofold:
rbf_sigma and boxconstraint must be positive.
You should look at points spaced approximately exponentially apart.
This function handle computes the cross validation at parameters
exp([rbf_sigma,boxconstraint]):
minfn = #(z)crossval('mcr',cdata,grp,'Predfun', ...
#(xtrain,ytrain,xtest)crossfun(xtrain,ytrain,...
xtest,exp(z(1)),exp(z(2))),'partition',c);
What is the function that I should be implementing here? Is it exp or minfn? I will appreciate if you can give me the code for this section. Thanks.
I will like to know what does it mean when it says exp([rbf_sigma,boxconstraint])
rbf_sigma: The svm is using a gaussian kernel, the rbf_sigma set the standard deviation (~size) of the kernel. To understand how kernels work, the SVM is putting the kernel around every sample (so that you have a gaussian around every sample). Then the kernels are added up (sumed) for the samples of each category/type. At each point the type which sum is higher would be the "winner". For example if type A has a higher sum of these kernels at point X, then if you have a new datum to classify in point X, it will be classified as type A. (there are other configuration parameters that may change the actual threshold where a category is selected over another)
Fig. Analyze this figure from the webpage you gave us. You can see how by adding up the gaussian kernels on the red samples "sumA", and on the green samples "sumB"; it is logical that sumA>sumB in the center part of the figure. It is also logical that sumB>sumA in the outer part of the image.
boxconstraint: it is a cost/penalty over miss-classified data. During the training stage of the classifier, where you use the training data to adjust the SVM parameters, the training algorithm is using an error function to decide how to optimize the SVM parameters in an iterative fashion. The cost for a miss-classified sample is proportional to how far it is from the boundary where it would have been classified correctly. In the figure that I am attaching the boundary is the inner blue circumference.
Taking into account BGreene indications and from what I understand of the tutorial:
In the tutorial they advice to try values for rbf_sigma and boxconstraint that are exponentially apart. This means that you should compare values like {0.2, 2, 20, ...} (note that this is {2*10^(i-2), i=1,2,3,...}), and NOT like {0.2, 0.3, 0.4, 0.5} (which would be linearly apart). They advice this to try a wide range of values first. You can further optimize later FROM the first optimum that you obtained before.
The command "[searchmin fval] = fminsearch(minfn,randn(2,1),opts)" will give you back the optimum values for rbf_sigma and boxconstraint. Probably you have to use exp(z) because it affects how fminsearch increments the values of z(1) and z(2) during the search for the optimum value. I suppose that when you put exp(z(1)) in the definition of #minfn, then fminsearch will take 'exponentially' big steps.
In machine learning, always try to understand that there are three subsets in your data: training data, cross-validation data, and test data. The training set is used to optimize the parameters of the SVM classifier for EACH value of rbf_sigma and boxconstraint. Then the cross validation set is used to select the optimum value of the parameters rbf_sigma and boxconstraint. And finally the test data is used to obtain an idea of the performance of your classifier (the efficiency of the classifier is determined upon the test set).
So, if you start with 10000 samples you may divide the data for example as training(50%), cross-validation(25%), test(25%). So that you will sample randomly 5000 samples for the training set, then 2500 samples from the 5000 remaining samples for the cross-validation set, and the rest of samples (that is 2500) would be separated for the test set.
I hope that I could clarify your doubts. By the way, if you are interested in the optimization of the parameters of classifiers and machine learning algorithms I strongly suggest that you follow this free course -> www.ml-class.org (it is awesome, really).
You need to implement a function called crossfun (see example).
The function handle minfn is passed to fminsearch to be minimized.
exp([rbf_sigma,boxconstraint]) is the quantity being optimized to minimize classification error.
There are a number of functions nested within this function handle:
- crossval is producing the classification error based on cross validation using partition c
- crossfun - classifies data using an SVM
- fminsearch - optimizes SVM hyperparameters to minimize classification error
Hope this helps