I'm trying to restore tables from a dump file. It's illustrated by a footnote in the paper "VCCFinder-Finding Potential Vulnerabilities in Open-Source Projects to Assist Code Audits", that the dump file that the team created with pg_dump could be read with pg_restore. As it's shown in paper footnote with red line to emphasize. That's where I've started.
1. Use pg_restore command
By typing the command mentioned in your paper: VCCFinder: Finding Potential Vulnerabilities in Open-Source Projects to Assist Code Audits:
pg_restore -f vcc_base I:\OneDrive\PractiseProject\x_prjs\m_firmware_scan\m_firmware_scan.ref\vcc-database\vccfinder-database.dump
Windows CMD had returned an error message:
pg_restore: error: input file appears to be a text format dump. Please use psql.
As I had tried the operation in different version, including v14.4, v9.6, v9.4 and v9.3, the outcome is the same error message.
2.Use psql command
Then I turned to another direction: using psql. After typing command,
psql -v ON_ERROR_STOP=1 -U postgres < I:\OneDrive\PractiseProject\x_prjs\m_firmware_scan\m_firmware_scan.ref\vcc-database\vccfinder-database.dump
apart from postgreSQL 14.4 environment, the returned error message is:
psql: SCRAM authentication requires libpq version 10 or above
Under postgreSQL 14.4 environment, the returned message became:
SET
SET
SET
SET
SET
SET
ERROR: schema "export" already exists
If I remove the -v ON_ERROR_STOP=1 option, and returned message would be like this:
SET
SET
SET
SET
SET
SET
ERROR: schema "export" already exists
SET
SET
SET
ERROR: type "public.hstore" does not exist
LINE 27: patch_keywords public.hstore
^
ERROR: relation "cves" already exists
ERROR: relation "repositories" already exists
ERROR: relation "commits" does not exist
invalid command \n
invalid command \N
invalid command \N
...
(Solved) I have tried to solve the unreadable code problem shown in above error messages by typing chcp 65001, chcp 437 and etc to change character set into UTF8 or American English in Windows CMD, but it's not helpful. But after viewing the source code of the dump file in Visual Studio, it's not difficult to infer that those error messages were caused by psql commands in the dump file.
After the error messages became understandable, I focused on one particular error message:
ERROR: type "public.hstore" does not exist
LINE 27: patch_keywords public.hstore
So I manually created a "hstore" type below the "pulic SCHEMA", after that error messages turned into these:
SET
SET
SET
SET
SET
SET
SET
ERROR: schema "export" already exists
SET
SET
SET
ERROR: relation "commits" already exists
ERROR: relation "cves" already exists
ERROR: relation "repositories" already exists
ERROR: malformed record literal: ""do"=>"1", "if"=>"0", "asm"=>"41", "for"=>"5", "int"=>"13", "new"=>"0", "try"=>"0", "auto"=>"0", "bool"=>"0", "case"=>"0", "char"=>"1", "else"=>"0", "enum"=>"0", "free"=>"0", "goto"=>"0", "long"=>"15", "this"=>"0", "true"=>"0", "void"=>"49", "alloc"=>"0", "break"=>"0", "catch"=>"0", "class"=>"0", "const"=>"0", "false"=>"0", "float"=>"0", "short"=>"0", "throw"=>"0", "union"=>"0", "using"=>"0", "while"=>"1", "alloca"=>"0", "calloc"=>"0", "delete"=>"0", "double"=>"0", "extern"=>"4", "friend"=>"0", "inline"=>"18", "malloc"=>"0", "public"=>"0", "return"=>"4", "signed"=>"1", "sizeof"=>"0", "static"=>"32", "struct"=>"4", "switch"=>"0", "typeid"=>"0", "default"=>"0", "mutable"=>"0", "private"=>"0", "realloc"=>"0", "typedef"=>"0", "virtual"=>"0", "wchar_t"=>"0", "continue"=>"0", "explicit"=>"0", "operator"=>"0", "register"=>"0", "template"=>"0", "typename"=>"0", "unsigned"=>"23", "volatile"=>"23", "namespace"=>"0", "protected"=>"0", "const_cast"=>"0", "static_cast"=>"0", "dynamic_cast"=>"0", "reinterpret_cast"=>"0""
DETAIL: Missing left parenthesis.
CONTEXT: COPY commits, line 1, column patch_keywords: ""do"=>"1", "if"=>"0", "asm"=>"41", "for"=>"5", "int"=>"13", "new"=>"0", "try"=>"0", "auto"=>"0", "bo..."
ERROR: syntax error at or near "l022_save"
LINE 1: l022_save, pl022_load, s);
^
invalid command \n
invalid command \N
invalid command \N
...
Now the three tables have been created, but there is no content in them.
3. Install hstore
After searching for "hstore"hstore type does not exist with hstore installed postgresql, I realized that the "hstore" should be installed, but not be manually created. So I typed this in psql command line:
postgres=# create EXTENSION hstore; And there were new error messages:
SET
SET
SET
SET
SET
SET
SET
ERROR: schema "export" already exists
SET
SET
SET
CREATE TABLE
ERROR: relation "cves" already exists
ERROR: relation "repositories" already exists
ERROR: missing data for column "hunk_count"
CONTEXT: COPY commits, line 23201: "11388700 178 \N other_commit 1d6198c3b01619151f3227c6461b3d53eeb711e5\N blueswir1#c046a42c-6fe2-441..."
ERROR: syntax error at or near "l022_save"
LINE 1: l022_save, pl022_load, s);
^
invalid command \n
invalid command \N
invalid command \N
...
And still, there is no content in those three tables.
4. Generate and view tables
After looking into the source code of the dump file, and trying to fix the "hunk_count" problem but end up with failure. It occurs to me that the above error messages just caused by one paticular row of code. So I had deleted the row and the old error messages were gone but there were new error messages caused by another row. Evetually I have deleted 10 rows in total, comparing to the total row number: 351409, those deleted parts are negligible. And three tables weren't empty anymore, as it's shown in pgAdmin 4.
However, the pgADmin only demonstrated the structure of those tables, I still didn't know how to view the content in them. By refering to 2 Ways to View the Structure of a Table in PostgreSQL, I typed
SELECT
*
FROM
export.repositories/ export.cves/ export.commits
WHERE
TRUE
to generate and view corresponding tables in pgAdmin 4. For example, final cve table:
5. In the end
Looking back at these steps, these are all easy steps, but for a guy who was not familiar with the tools or operations, it could cost several days to search and type, step by step for one simple purpose. I wish this post could be useful to someone like me.
However, I am not so familiar with psql commands or anything about postgreSQL, as a matter of fact, I had never used them before. So I'm wondering if someone could point out some mistakes I may have made in those attempts, or provide some suggestions for my dilemma.
First , ensure your dump format.
Try to read header (first 5 chars) of dump file.
If it is signed as PGDMP then it is binary/custom dump else it is sql (human readable format).
- use pg_restore for binary dump import.
$ pg_restore -U postgres -d <dbname> file.dump
- use psql to import plain text sql dump.
$ psql -U postgres -d <dbname> < file.dump
Solved, as I've demonstrated above.
I am trying to use Apache Drill to export a .csv file. This other question indicated that this is achieved by:
use dfs.tmp;
alter session set `store.format`='csv';
create table dfs.tmp.my_output as select * from cp.`employee.json`;
I tried running this block (of three commands) simultaneously in the Apache Drill web interface but got the error bellow. It somehow is not recognizing the ; or not taking multiple commands.
I also tried running each line separately, without the ; but the changes of the two commands did not persist (and the export command (3rd command) deafauted back to exporting a parquet file (the set default)).
How can I run this in Drill?
Query Failed: An Error Occurred
org.apache.drill.common.exceptions.UserRemoteException: PARSE ERROR: Encountered ";" at line 1, column 12. Was expecting one of: <EOF> "." ... "[" ... SQL Query use dfs.tmp; ^ alter session set `store.format`='csv'; create table dfs.tmp.`elos_cnis` as select * from dfs.tmp.`/bases_parquet/elos_cnis` [Error Id: 00493fbe-924e-43e9-a684-f7d1abfed04e on sbsb35.ipea.gov.br:31010] (org.apache.calcite.sql.parser.SqlParseException) Encountered ";" at line 1, column 12. Was expecting one of: <EOF> "." ... "[" ... org.apache.drill.exec.planner.sql.parser.impl.DrillParserImpl.convertException():391 org.apache.drill.exec.planner.sql.parser.impl.DrillParserImpl.normalizeException():121 org.apache.calcite.sql.parser.SqlParser.parseStmt():149 org.apache.drill.exec.planner.sql.SqlConverter.parse():157 org.apache.drill.exec.planner.sql.DrillSqlWorker.getQueryPlan():104 org.apache.drill.exec.planner.sql.DrillSqlWorker.getPlan():79 org.apache.drill.exec.work.foreman.Foreman.runSQL():1017 org.apache.drill.exec.work.foreman.Foreman.run():289 java.util.concurrent.ThreadPoolExecutor.runWorker():1142 java.util.concurrent.ThreadPoolExecutor$Worker.run():617 java.lang.Thread.run():748 Caused By (org.apache.drill.exec.planner.sql.parser.impl.ParseException) Encountered ";" at line 1, column 12. Was expecting one of: <EOF> "." ... "[" ... org.apache.drill.exec.planner.sql.parser.impl.DrillParserImpl.generateParseException():17963 org.apache.drill.exec.planner.sql.parser.impl.DrillParserImpl.jj_consume_token():17792 org.apache.drill.exec.planner.sql.parser.impl.DrillParserImpl.SqlStmtEof():861 org.apache.drill.exec.planner.sql.parser.impl.DrillParserImpl.parseSqlStmtEof():180 org.apache.drill.exec.planner.sql.parser.impl.DrillParserWithCompoundIdConverter.parseSqlStmtEof():59 org.apache.calcite.sql.parser.SqlParser.parseStmt():142 org.apache.drill.exec.planner.sql.SqlConverter.parse():157 org.apache.drill.exec.planner.sql.DrillSqlWorker.getQueryPlan():104 org.apache.drill.exec.planner.sql.DrillSqlWorker.getPlan():79 org.apache.drill.exec.work.foreman.Foreman.runSQL():1017 org.apache.drill.exec.work.foreman.Foreman.run():289 java.util.concurrent.ThreadPoolExecutor.runWorker():1142 java.util.concurrent.ThreadPoolExecutor$Worker.run():617 java.lang.Thread.run():748
Drill Web-UI does not support submitting multiple queries within the same query page. Please try using SqlLine or submit in Web-UI one-by-one
alter system set `store.format`='csv';
query to set store.format at the system level, since Web-UI does not store session by default and after that submit the following query
create table dfs.tmp.my_output as select * from cp.`employee.json`;
I'm new to jboss-cli and working through the 'jboss-cli recipes'.
Question
How do I read one specific property using jboss-cli? E.g.
jboss.home.dir (e.g. "-Djboss.home.dir=/path/to/my/jboss")
Xmx ("-Xmx=4G")
Context
The "CLI Recipes" documentation has this helpful example to get all system properties. However its 'too much infomration'. I want to script reading one specific property.
https://docs.jboss.org/author/display/WFLY10/CLI+Recipes#CLIRecipes-
Overview of all system properties in JBoss AS7+ including OS system
properties and properties specified on command line using -D, -P or
--properties arguments.
Standalone
[standalone#IP_ADDRESS:9999 /] /core-service=platform-mbean/type=runtime:read-attribute(name=system-properties)
Thanks in advance
You could do a :
:resolve-expression(expression=${jboss.home.dir})
You can use the cli like this:
$JBOSS_HOME/bin/jboss-cli.sh -c --command=/system-property=MY_PROPERTY:read-resource
you get an output like this:
$JBOSS_HOME/bin/jboss-cli.sh -c --command=/system-property=MY_PROPERTY:read-resource
{
"outcome" => "success",
"result" => {"value" => "4.0"}
}
which you can extract by piping into something like this:
<cli command> | grep "{\"value\"" | sed "s/.*value\" => \"\([^\"]*\)\".*/\1/"
its a bit ugly, and there are some nasty edge cases if the values were to be something like "value" => "value =" or something hideous.
In general this works OK.
Change the sed command to be a bit more specific to fix that.
This link pointed me to the answer: I can use a groovy script to get the values. From what I see the "jboss-cli command line" does not offer this flexibility.
https://developer.jboss.org/wiki/AdvancedCLIScriptingWithGroovyRhinoJythonEtc
Solution
Here's a solution for jboss home.
[For memory you can get results from "/core-service=platform-mbean/type=memory/:read-attribute(name=heap-memory-usage)"
bash
#!/bin/sh
# Note: must set jbbin to 'jboss home /bin'
groovy -cp $jbbin/client/jboss-cli-client.jar readJbossHome.groovy
Groovy
Note: this is 'quick and dirty'.
import org.jboss.as.cli.scriptsupport.*
cli = CLI.newInstance()
cli.connect()
// Define properties
myParentProp="system-properties"
myProp="jboss.home.dir"
// Retrieve and pluck values
result = cli.cmd("/core-service=platform-mbean/type=runtime:read-resource(recursive=true,include-runtime=false)")
myResult = result.getResponse().get("result")
myParentVal = myResult.get(myParentProp)
myVal = myParentVal.get(myProp)
// Print out results
println "Property detail ${myProp} is ${myVal}"
cli.disconnect()
You can also do it via Wildfly management rest call.
http://localhost:9990/management
POST
Headers = Content-Type:application/json
Body =
{
"operation":"resolve-expression",
"expression":"${jboss.home.dir}"
}
With newer Teiid DOCs I have found some useful information I thought this might be helpful to share to people coming across a similar usecase
https://access.redhat.com/documentation/en-us/jboss_enterprise_application_platform/6.3/html/administration_and_configuration_guide/configure_system_properties_using_the_management_cli
Helps Adding, Removing & Reading System Properties with jboss-cli
jboss-cli
If you have a cli command like ehsavoie suggested :resolve-expression(expression=${jboss.home.dir}) and want to use the content of the "result" property within jboss-cli you can save it in a variable. You can use backticks (`) to evaluate expressions.
simple expression
[standalone#localhost:9990 /] :resolve-expression(expression=${jboss.home.dir})
{
"outcome" => "success",
"result" => "/home/user/wildfly"
}
use in valiable
[standalone#localhost:9990 /] set wildflydirectory=`:resolve-expression(expression=${jboss.home.dir})`
[standalone#localhost:9990 /] echo $wildflydirectory
/home/user/wildfly
PowerShell
If you happen to use the PowerShell you can use a one-liner to extract even deeply nested results with the help of the cli's --output-json option and PowerShell's ConvertFrom-Json cmdlet. In this way the parsing problem from James Roberts's approach with grep and sed are gone.
$value=(Invoke-Expression "./jboss-cli.ps1 -c --command=':resolve-expression(expression=`${jboss.home.dir})' --output-json" | ConvertFrom-Json).result
It is a bit tricky to quote the command and escape the correct PowerShell special characters.
I installed moodle 1.9.12 and now I want to use Algebra notation in content. I enable "TeX Notation" and "Algebra Notation" in administrator panel and also install mimetext and dvips and Imagemagic on the server. fortunately Tex Notation works fine but I got the following error for Algebra:
sh: /var/www/html/moodle/filter/tex/mimetex.linux: not found
The shell command
"/var/www/html/moodle/filter/tex/mimetex.linux" -e "/var/www/moodledata/filter/algebra/de06d6c44d98ba4e42dffca988bf530b.gif" -- '\Large \frac{\sin\left(z\right)}{x^{2}+y^{2}}'
returned status = 127
File size of mimetex executable /var/www/html/moodle/filter/tex/mimetex.linux is 830675
The file permissions are: 100775
The md5 checksum of the file is 56bcc40de905ce92ebd7b083c76e019e
Image not found!
Note: /var/www/html/moodle/filter/tex/mimetex.linux exists on the server and is executable!!!
What is the problem?? Any idea?????
From what you have described, calling the general tex filter debug page works and does not show up the same error.
/filter/tex/texdebug.php works, but /filter/algebra/algebradebug.php does not.
If this is the case, perhaps you could check for an open_basedir, or safe_mode_exec_dir being set to include the current working directory, or otherwise restricting the execution of /var/www/html/moodle/filter/tex/mimetex.linux, while the current working directory is /var/www/html/moodle/filter/algebra.
You could look at this by visiting /admin/phpinfo.php at your site, and look carefully at the effective values of open_basedir, safe_mode and safe_mode_exec_dir.
You could also check the apache error log or add the following lines to the top of the algebra debug php file, and you might see some extra error messages:
$CFG->debug = 6143 ;
$CFG->debugdisplay= 1 ;
Hope that helps
I've successfully created a box file with tesseract
now after running the unicharset_extractor
having it creating the unicharset file that looks like:
...
n 3 NULL -1
s 3 NULL 23
t 3 NULL 43
...
I've continued with this command
mftraining -U unicharset -O testlang.unicharset testlang.tr
only to get the next error
Reading testlang.tr ...
testlang has no defined properties.
Error: Illegal short name for a feature!
I've never worked with Tesseract, but it seems there is an open issue in the bug database that looks a lot like your problem : http://code.google.com/p/tesseract-ocr/issues/detail?id=385
It seems that it is related to scientific notation not being correctly supported by some functions.
On the issue page a user suggests a solution, and another one proposes a patch. You could try applying the patch to see if it helps.