I have met a problem with hdf5 libraries on eclipse CDT. When running a test C++ program, I got prompt information as below:
/home/lsl/Documents/CODE/eclipse-workspace/ReadWriteHDF5/Debug/ReadWriteHDF5:
error while loading shared libraries: libhdf5.so.103: cannot open
shared object file: No such file or directory.
libhdf5.so is confirmed to exist in /usr/local/lib/hdf5-1.10.4/lib and /usr/local/lib/hdf5-1.10.4/lib is within LD_LIBRARY_PATH. Do you have any indications?
Thanks very much!
It looks like Linux is your main operating system. See what happens when you type
sudo apt install libhdf5-dev
since it might supplant the package you're looking for. It worked for me.
I come across similar issue while compiling C++ code that uses Armadillo. Since I have anaconda installed, I find the libhdf5.so.103 file located at ~/anaconda3/lib. After I add the path to LD_LIBRARY_PATH, the error disappears.
I came across exactly the same problem today (perhaps the only difference is that it complaint libhdf5.so.200 was missing). What I eventually found out is that the system (Ubuntu 20.04) already shipped with libhdf5-dev at version 1.10.4, and this conflicted somehow with my installed version 1.12.2. My build command line is as below:
clang++ <...> -L/my/custom/path/to/hdf5-1.12.2/hdf5/lib <...>
Since the system hdf5 is in standard location, the linker finds simultaneously two versions, causing problem.
My solution is:
sudo apt purge libhdf5-dev
Hope it helps.
Related
After conscientiously following the install instructions on Linux from swift.org, I encounter an issue where it is not possible to compile anything on a Ubuntu 18.04 machine. The REPL seems to work but during compilation (when calling swift build) the following error appears:
/usr/bin/ld: cannot find -lstdc++
There are more details in the full bug report [SR-9093]. I don't know at all what to do to solve this issue, there are similar problems already mentioned in other bug reports, for instance on this really old one [SR-35].
What should I do?
Thank you
I am assuming that you had already installed the libstdc++ successfully and you have set the permissions properly. But I really doubt that it was installed correctly but it was installed with corruption of some sort. The corruption occurred because you didn't install libstdc++ via a package manager. Result was some form of weirdness in the package manager database which effected the overall functioning system. Exactly why adding something to a folder should change anything at all. I don't know why this happens, unless the folder is hot i.e symbolically linked to a program which doesn't have any tolerance for hacks like simply copying a file into the folder. So for now try to install the libstdc++ again. Below is the link to the file to again download the correct program and this is compatible with amd64.
http://security.ubuntu.com/ubuntu/pool/main/g/gcc-5/libstdc++6_5.4.0-6ubuntu1~16.04.10_amd64.deb
And below are some link to help
https://ubuntuforums.org/showthread.php?t=1425470
https://ubuntuforums.org/showthread.php?t=808045
https://ubuntuforums.org/showthread.php?t=808045
https://packages.ubuntu.com/search?keywords=libstdc%2B%2B
https://packages.ubuntu.com/xenial/amd64/libstdc++6
Install libstdc++
sudo apt install libstdc++6
It seems possible that the apt install did not run the ldconfig program, which should be run to add the library to the list of those which ld.so knows about.
It looks like you can do it manually:
sudo ldconfig
IMPORTANT CAVEAT: I don't have Ubuntu and haven't been able to test this. And it's a sudo command. Run at your own risk, YMMV, etc.
If this does not work, it's possible that a file called /etc/ld.so.conf is not set up to search the directory where libstdc++ ended up. I wouldn't dare try to describe how to fix that.
sudo apt install -f
The command above should install any missing dependencies.
I'm posting here with the hopes that someone will be kind enough to help me. Just to clarify, I'm sort of a newb, so I'd be really grateful if you give more details to your explanations.
I'm on Windows 10 64 bit, QT 5.9.1, PostgreSQL is 9.6.3 version.
I'm working on a project, where I need to get a postgresql database running and connect it to the code I'm doing right now. Unfortunately, when I try to install the driver, I run into all kinds of problems. I've been reading on threads on sites, but they are outdated and some folders do not match, which my first problem arises. For some reason I cannot get qmake to work, even though I edit the path in the variables.
I tried running the commands from here.
cd %QTDIR%\qtbase\src\plugins\sqldrivers\ps
ql
qmake "INCLUDEPATH+=C:/psql/include" "LIBS+=C:/psql/lib/ms/libpq.lib" psql.pro
nmake
Basically my folders don't aren't 100% as the guide, also I don't have a libpq.lib file
On my final attempt I tried the following:
qmake "INCLUDEPATH+=C:/PostgreSQL/pg96/include" "LIBS+=C:/PostgreSQL/pg96/lib/libpq.lib"
Project ERROR: Cannot run compiler 'cl'. Maybe you forgot to setup the environment?
You'll need to have PostgreSQL installed so you have libpq.lib and libpq.dll. You cannot compile the Qt PostgreSQL driver without these. You'll also need to find the include directory for your PostgreSQL install, the one that contains libpq-fe.h.
Then determine the paths to those. Set the PATH to include the directory with libpq.dll. Set LIBS to include the directory with libpq.lib. And set the INCLUDEPATH to include the directory with libpq-fe.h.
You'll probably need to do this within a "Visual Studio Command Prompt" or run vcvarsall.bat fist, too, so qmake can find Visual Studio.
MATLAB 2014a (8.3) Runtime Compiler (MCR) Errors when trying to launch deployed (using
deploy tool) application in Ubuntu 13.04.
Right after installation of MCR if one runs the deployed application following error appears:
error while loading shared libraries: libmwlaunchermain.so: cannot open shared object file: No such file or directory.
Since I have already found a solution to this problem wasting a day, I just want to share it:
This seems to be a problem of MATLAB MCR installation script designed for Linux by MathWorks. Furthermore, it is a result of a known Ubuntu bug. To fix it, add your MCR to the $PATH as shown below:
First make sure to add the missing files to the right folder, in terminal:
sudo cp /usr/local/MATLAB/MATLAB_Compiler_Runtime/v83/runtime/glnxa64/* /usr/local/MATLAB/MATLAB_Compiler_Runtime/v83/bin/glnxa64
Add the proper library folder to your .profile, such that this change will stay after logout
ubuntu: gedit .profile
In the end of the file add following lines:
#MATLAB MCR
export LD_LIBRARY_PATH=/usr/local/MATLAB/MATLAB_Compiler_Runtime/v83/bin/glnxa64
export XAPPLRESDIR=/usr/local/MATLAB/MATLAB_Compiler_Runtime/v83/X11/app-defaults
export PATH=$PATH:$LD_LIBRARY_PATH
export PATH=$PATH:$XAPPLRESDIR
Invoke following code in the terminal to make sure that Ubuntu bug doesn't re-write your variable:
echo STARTUP=\"/usr/bin/env LD_LIBRARY_PATH=\${LD_LIBRARY_PATH} \${STARTUP}\" | sudo tee /etc/X11/Xsession.d/90preserve_ld_library_path
Reboot
If this solution doesn't work, try to reinstall MATLAB MCR 8.3 from the MathWorks website and repeat the steps.
In my case (Matlab R2016b = v91), the binary generated by Matlab was accompanied by a shell script which sets up the LD_LIBRARY_PATH for me. If I just run
./run_scriptname.sh
it complains about the missing <deployedMCRroot>. So running the script with
./run_scriptname.sh /home/user/MatlabMCR/v91
it worked out of the box.
For me, it was not obvious that the path shown above is the <deployedMCRroot> because I chose /home/user/MatlabMCR as installation directory. And with the wrong path specified, it led to the same error message.
I'm trying to install plpython on a postgres server on a Windows machine. When I issue the command CREATE EXTENSION plpython3u; in postgres, I get the following error, which I'm trying to find the source of.
ERROR: could not load library "C:/Program Files/PostgreSQL/9.3/lib/plpython3.dll": The specified module could not be found.
This file exists, which I presume means that Windows can't find one of the files it depends on. When I open the plpython3.dll with Dependency Walker, it tells me it can't locate the GPSVC.dll.
Is it likely that this missing dll would cause the CREATE EXTENSION command to fail? I found a .dll with the same name in C:\Windows\System32 and copied it over to C:\Windows\SysWOW64, but this did not resolve the probelm, and although dependency walker now finds the .dll, it raises several other errors about having modules with different CPU types.
I know this is an old question, but thought I would post to save someone the headaches I went through trying to fix this...
I had the same error trying to add pl python using Postgres 9.5. Dependency walker showed that plpython3.dll was looking for python33.dll, so I installed python 3.3 and added the install directory into my path and that seems to have fixed the problem.
Use specific python version on Windows. I could get it running with python 3.2.x with postgres 9.3
I am getting a bunch of compile errors when I try to install the MySQL DBD::mysql Perl library. I am trying to install this library on OpenSuse linux (SUSE Linux Enterprise server 10 (x86_64) version 10, patch level 4)
The install fails when trying to compile dbdimp.h. There are hundreds of complile errors but I have reason to believe they all stem from the first 3:
dbdimp.h:23:49: error: mysql.h: No such file or directory
dbdimp.h:24:45: error: mysqld_error.h: No such file or directory
dbdimp.h:26:49: error: errmsg.h: No such file or directory
I believe that the reason I am getting the errors above is that I have no MySql Client installed. I do not know how to install mysql client (I believe I am supposed to get some version of libmysqlclient).
I am brand new to opensuse and vaguely familar with installing packages on Linux in general have used yum, yast, apt-get on ubuntu + centOS previously but the only package manager tools that seem to be on OpenSuse 10 are rpm and zypper. I have not managed to install the required mysql client using either of these. If anyone knows how to install MySql Client to resolve my issue I would greatly appreciate any recomendations
Thanks
You need to install MySQL or the MySQL client libraries, either through your system's package manager or by following the installation instructions from the source code.
It sounds like your question is really "How do I install MySQL on OpenSuse", which would be more appropriate for one of the other StackExchange sites.
I was able to resolve this to a point. In my original question, I stated that I had tried using YAST but that it had not worked. In fact, I did not fully explore the YAST install option but when I did, I managed to download install the required librarys by following an article I found (http://adminramble.com/install-mysql-yast/#chitika_close_button)
I was able to open the YAST GUI in the terminal window (not an X-window display) and navigate through the "software management" section wherein I was able to do a search for MySql. Amoung the search results were mysql client libraries, which I then selected and hit "Accept". The installation started and completed successully.
In order to complile the PERL DBD::mysql module, I had to create a new makefile with the ccflags specified so that the header files could be found:
perl Makefile.PL --cflags -I/usr/include/mysql
I say "to a point" at the top of this comment because I then ran into further problems compiling but my original issue posted has been partially resolved and getting this far may help someone else who is experiencing the same problem. Will update if I get a solution to the compile problem.