OWL to relational transformation tools - rdbms

I am starting to work with OWL using Protégé. It is all very intuitive for someone with a background on ontologies. With the onotology specified I would need to implement it as a relational schema in a DBMS. I have so far found references to two tools, none of which are usable in my case:
An old plug-in for Protégé exists, but can only deal with mySQL.
A article from the International Journal of Advanced Computer Science and Applications refers to a tool named OWLMap, but it is nowhere to be found (I wonder how this article was reviewed).
It is not difficult to use a OWL library to load a model into an OO language and then derive a relational schema from it. But if a tool or method already exists I would rather avoid developing something new.

Related

Framework to manage custom tables

In several occasions I have seen people developing a distributed system which allows them to manage customized tables in a similar fashion to excel (spreadsheets).
What I am interested to find is the name of the discipline or the generic tool name for doing this. Additionally, I would like to know any development library (c++, java...) or any framework.
Example:
We have a relational database. This system would allow to the user to compose tables (display) including columns from: any attribute from one entity from the db; foreign attributes; and computed columns.
PS: I am not sure where to place the question. I appreciate any help to move the question to the correct community.
I have been investigating a little bit more.
Jasper Reports is a software that can generate this kind of tables as reports.
Hence I assume that the name of the discipline name should be something similar to "SQL reporting manager".
Nevertheless, I still interested on libraries to do this at development level (Java, C++, PHP,...)

Why mongoDB is used in the MEAN stack

I'm fixing the usability/documentation for the mean stack. I'm starting with Mean.JS. Can someone give me the salient reasons why the authors of the MEAN stack use MongoDB as the database? There are other databases to choose, but MongoDB is used for some reason.
I realize there are questions already covering databases, but I'm wondering specifically why it was used in the MEAN stack scenario.
It think the primary reason is that MongoDB uses the same language Javascript (ECMA Script) for methods and functions API, rather than a separate language (like SQL). Thus MongoDB is a good no SQL database option, and it works much more efficiently as a database for the rest of the stack.
As others have pointed out, there are many other reasons, like that it is the most popular NoSQL database at this point. It has a decent shell and you can write Javascript in it. It is Open Source and well documented.
It is also really easy to setup, and scales fairly well, although not as good as some other NoSQL databases.
It also uses BSON, which is similar to JSON, which is similar to a Javascript object. So it is just plain easy to learn and easy to use this particular database with the rest of a Javascript stack.
There's some pretty good reasons here: http://blog.mongodb.org/post/49262866911/the-mean-stack-mongodb-expressjs-angularjs-and
A Glimpse Into Four Key Components - How MEAN Stack Adds New Dimensions To New-Age Web Applications
All four components of MEAN Stack are popular in the app development space. It offers a platform that enables an effortless development work process. Let’s know about every component and its unique features.
MongoDB – Independent database framework
For any web app building, data storage and management are essential. MongoDB is a popular database with NoSQL document to allow this purpose. The primary use case of this framework is to enable data storage and management of every web application development.(Read More)

What has been done in the field of versioning models?

We had a rather nice lecture about Model driven architecture by a guy from Model Labs.
One thing that got me intrigued was the version control for models ( not to be confused with different models of version control) - or the lack of thereof. By version control for models he meant a way to version XML, EMF files which preserves their semantic.
So, I'm interested in what has been done so far on that field (he mentioned something about SVN and Moodle, though I could have misheard him). The Google search yielded nothing so I'm turning to the wisdom of the Stack Overflow.
I'm looking mostly for information in the form of books, articles, links.
I don't know of a VCS alone dedicated to Model, because Model-base design is often part of a all chain of documents that need to be kept in sync.
Namely (not an exhaustive list):
requirements documents (from which you start modeling)
source code and documentations (generated and implemented from the model)
Plus, I never saw the GUI aspect fully solved in those tools (one model painstakingly organized a certain way might be versioned without layout information, and restored organized another way).
One tool I know of which covers all of those development processes is Modelio, which includes a "teamwork manager"
Another example (which I don't know as much about) would be metaCASE, which has an interesting paper "The Model Repository: More than just XML under version control", about DSM (Domain-Specific Modeling).
DSM: model-based software development approach that uses visual models as primary artifacts in the development process.
DSM raises the level of abstraction beyond normal programming languages by directly specifying the solution in a language that uses concepts and rules from the problem domain – a Domain-Specific Language (DSL).
It does summarize the problem:
There is increased awareness within the modeling arena of the need for
a central repository of system description information.
This is brought on by a growing recognition that only with a strong central repository can modeling tools be integrated, cope with large projects, provide full life-cycle support, produce complete documentation, perform system-wide validation and verification, and adequately control a project.
A full list of version control tools for models can be found here: http://modeling-languages.com/content/version-control-tools-modeling-artifacts
Check EMF framework Edapt
it provides the following features:
Edapt IDE Tooling:
Ecore Editor enhancement to create and maintain the history of an Ecore
Operation-browser to execute refactorings on an Ecore
Release Tooling to prepare a migration plugin from the Ecore history
Custom Migration Support
Edapt Runtime:
API to detect version of given model instances
API to migrate model instances with registered migration plugins

OODBMS - RDBMS difference and which one is suitable for a factory management system

I searched a bit for the differences between OODBMS and RDBMS. I pretty much know what they are. However, how I will decide which one is better for which applications. Can anyone kindly help me please?
What I meant for factory management is: there are production lines to manufacture bottled, frozen and other food stuff. The application manages from assigning staff onto the lines, to keep the production records in the system. Which dbms is better for such systems?
Thanks in advance.
Here is a nice article by Rick Grehan that describes cases where ODBMS are useful:
http://www.odbms.org/wp-content/uploads/2013/11/006.04-Grehan-When-to-Use-an-ODBMS-2005.pdf
Disclaimer: this is an "old curmudgeon" answer, from a guy who wrote plenty of perfectly functional accounting, manufacturing and other code before OOP came into the mainstream.
With that being said...
Factory management is classic relational database stuff, it's what it was invented to do. The code for classic relational apps tends to follow very predictable patterns, lots of loops over retrieved rows from tables, or straight pass-through stuff: passing data up to the UI or down to the database. If your DB is well-designed, the biz logic you code will be details in those loops or pass-throughs, but those two patterns will dominate.
An OODMS on the other hand, from the point of view of this "old curmudgeon", attempts to recast the perfectly and efficiently functional RDBMS into something that will work with classes/objects, for no discernible gain over a system that has proven itself for decades to work extremely well. Classes have little or nothing to do with the classic code patterns that sit on top of relational databases. In fact, they tend to complicate things and can easily get in the way. I'm not saying don't use OOP code to deal with the database, just that OOP was invented for a different kind of problem, a problem that database apps don't happen to have.
Decision to choose OODBMS or RDBMS does not depend upon particular application like factory management/automation.
It is depends on many criteria like
1) Programming Paradigm - If you [programmer] choose to visualize/implement in the OO programming language then the OODBMS is suitable to store the objects as directly into the database, but Most widely the type of DBMS Relational, because it is well established commercially and have a good mathematical background.
2) Application Specific - For an factory automation/management, responsiveness and fast access is important. The OODBMS are swifter than the RDBMS. If you considered for web-development then a light-weight tool like MySQL will fit a lot.
3) Trend - Now there is paradigm swift from Legacy/Structural to Object/Component Oriented programming. so therefore, in this trend the OODBMS is best suitable for the Enterprise Applications like factory management, etc.
It depends on the application layer using. If it is a simple approach more towards procedural way [which can have classes too] RDBMS is more suitable. Otherwise if you are more towards a strict object oriented system OODBMS can be used.
I usually draw the line of usefulness at the point in which they need to be integrated into enterprise systems. If your project does not necessarily need to integrate, ODBMS is usually easier or technically superior. If you can integrate via web services or "push/pull" into an enterprise system DB, then you can still use an ODBMS, but there might be political pressure against it. (newer ODBMS/RDBMS replication like dRS for db4o may be a good fit) But if you need tight integration with legacy or enterprise datastores, then you're usually forced to use the RDBMS for one reason or another.
That said, your individual production lines might benefit greatly from an ODBMS which are great at storing oft-changing complex object models and schemas while the orchestrator system could follow my previous line of thinking.
I've been using ODBMS for many years, and have been dreading the project which requires me to return to purely relational data management. Although recent improvements in ORM tooling have made relational much more pleasant to work with, the ORM+RDBMS solution still can't keep up with ODBMS systems in a few key areas (see the previously mentioned article on odbms.org).

How To Create a Flexible Plug-In Architecture?

A repeating theme in my development work has been the use of or creation of an in-house plug-in architecture. I've seen it approached many ways - configuration files (XML, .conf, and so on), inheritance frameworks, database information, libraries, and others. In my experience:
A database isn't a great place to store your configuration information, especially co-mingled with data
Attempting this with an inheritance hierarchy requires knowledge about the plug-ins to be coded in, meaning the plug-in architecture isn't all that dynamic
Configuration files work well for providing simple information, but can't handle more complex behaviors
Libraries seem to work well, but the one-way dependencies have to be carefully created.
As I seek to learn from the various architectures I've worked with, I'm also looking to the community for suggestions. How have you implemented a SOLID plug-in architecture? What was your worst failure (or the worst failure you've seen)? What would you do if you were going to implement a new plug-in architecture? What SDK or open source project that you've worked with has the best example of a good architecture?
A few examples I've been finding on my own:
Perl's Module::Plugable and IOC for dependency injection in Perl
The various Spring frameworks (Java, .NET, Python) for dependency injection.
An SO question with a list for Java (including Service Provider Interfaces)
An SO question for C++ pointing to a Dr. Dobbs article
An SO question regarding a specific plugin idea for ASP.NET MVC
These examples seem to play to various language strengths. Is a good plugin architecture necessarily tied to the language? Is it best to use tools to create a plugin architecture, or to do it on one's own following models?
This is not an answer as much as a bunch of potentially useful remarks/examples.
One effective way to make your application extensible is to expose its internals as a scripting language and write all the top level stuff in that language. This makes it quite modifiable and practically future proof (if your primitives are well chosen and implemented). A success story of this kind of thing is Emacs. I prefer this to the eclipse style plugin system because if I want to extend functionality, I don't have to learn the API and write/compile a separate plugin. I can write a 3 line snippet in the current buffer itself, evaluate it and use it. Very smooth learning curve and very pleasing results.
One application which I've extended a little is Trac. It has a component architecture which in this situation means that tasks are delegated to modules that advertise extension points. You can then implement other components which would fit into these points and change the flow. It's a little like Kalkie's suggestion above.
Another one that's good is py.test. It follows the "best API is no API" philosophy and relies purely on hooks being called at every level. You can override these hooks in files/functions named according to a convention and alter the behaviour. You can see the list of plugins on the site to see how quickly/easily they can be implemented.
A few general points.
Try to keep your non-extensible/non-user-modifiable core as small as possible. Delegate everything you can to a higher layer so that the extensibility increases. Less stuff to correct in the core then in case of bad choices.
Related to the above point is that you shouldn't make too many decisions about the direction of your project at the outset. Implement the smallest needed subset and then start writing plugins.
If you are embedding a scripting language, make sure it's a full one in which you can write general programs and not a toy language just for your application.
Reduce boilerplate as much as you can. Don't bother with subclassing, complex APIs, plugin registration and stuff like that. Try to keep it simple so that it's easy and not just possible to extend. This will let your plugin API be used more and will encourage end users to write plugins. Not just plugin developers. py.test does this well. Eclipse as far as I know, does not.
In my experience I've found there are really two types of plug-in Architectures.
One follows the Eclipse model which is meant to allow for freedom and is open-ended.
The other usually requires plugins to follow a narrow API because the plugin will fill a specific function.
To state this in a different way, one allows plugins to access your application while the other allows your application to access plugins.
The distinction is subtle, and sometimes there is no distiction... you want both for your application.
I do not have a ton of experience with Eclipse/Opening up your App to plugins model (the article in Kalkie's post is great). I've read a bit on the way eclipse does things, but nothing more than that.
Yegge's properties blog talks a bit about how the use of the properties pattern allows for plugins and extensibility.
Most of the work I've done has used a plugin architecture to allow my app to access plugins, things like time/display/map data, etc.
Years ago I would create factories, plugin managers and config files to manage all of it and let me determine which plugin to use at runtime.
Now I usually just have a DI framework do most of that work.
I still have to write adapters to use third party libraries, but they usually aren't that bad.
One of the best plug-in architectures that I have seen is implemented in Eclipse. Instead of having an application with a plug-in model, everything is a plug-in. The base application itself is the plug-in framework.
http://www.eclipse.org/articles/Article-Plug-in-architecture/plugin_architecture.html
I'll describe a fairly simple technique that I have use in the past. This approach uses C# reflection to help in the plugin loading process. This technique can be modified so it is applicable to C++ but you lose the convenience of being able to use reflection.
An IPlugin interface is used to identify classes that implement plugins. Methods are added to the interface to allow the application to communicate with the plugin. For example the Init method that the application will use to instruct the plugin to initialize.
To find plugins the application scans a plugin folder for .Net assemblies. Each assembly is loaded. Reflection is used to scan for classes that implement IPlugin. An instance of each plugin class is created.
(Alternatively, an Xml file might list the assemblies and classes to load. This might help performance but I never found an issue with performance).
The Init method is called for each plugin object. It is passed a reference to an object that implements the application interface: IApplication (or something else named specific to your app, eg ITextEditorApplication).
IApplication contains methods that allows the plugin to communicate with the application. For instance if you are writing a text editor this interface would have an OpenDocuments property that allows plugins to enumerate the collection of currently open documents.
This plugin system can be extended to scripting languages, eg Lua, by creating a derived plugin class, eg LuaPlugin that forwards IPlugin functions and the application interface to a Lua script.
This technique allows you to iteratively implement your IPlugin, IApplication and other application-specific interfaces during development. When the application is complete and nicely refactored you can document your exposed interfaces and you should have a nice system for which users can write their own plugins.
I once worked on a project that had to be so flexible in the way each customer could setup the system, which the only good design we found was to ship the customer a C# compiler!
If the spec is filled with words like:
Flexible
Plug-In
Customisable
Ask lots of questions about how you will support the system (and how support will be charged for, as each customer will think their case is the normal case and should not need any plug-ins.), as in my experience
The support of customers (or
fount-line support people) writing
Plug-Ins is a lot harder than the
Architecture
Usualy I use MEF. The Managed Extensibility Framework (or MEF for short) simplifies the creation of extensible applications. MEF offers discovery and composition capabilities that you can leverage to load application extensions.
If you are interested read more...
In my experience, the two best ways to create a flexible plugin architecture are scripting languages and libraries. These two concepts are in my mind orthogonal; the two can be mixed in any proportion, rather like functional and object-oriented programming, but find their greatest strengths when balanced. A library is typically responsible for fulfilling a specific interface with dynamic functionality, whereas scripts tend to emphasise functionality with a dynamic interface.
I have found that an architecture based on scripts managing libraries seems to work the best. The scripting language allows high-level manipulation of lower-level libraries, and the libraries are thus freed from any specific interface, leaving all of the application-level interaction in the more flexible hands of the scripting system.
For this to work, the scripting system must have a fairly robust API, with hooks to the application data, logic, and GUI, as well as the base functionality of importing and executing code from libraries. Further, scripts are usually required to be safe in the sense that the application can gracefully recover from a poorly-written script. Using a scripting system as a layer of indirection means that the application can more easily detach itself in case of Something Bad™.
The means of packaging plugins depends largely on personal preference, but you can never go wrong with a compressed archive with a simple interface, say PluginName.ext in the root directory.
I think you need to first answer the question: "What components are expected to be plugins?"
You want to keep this number to an absolute minimum or the number of combinations which you must test explodes. Try to separate your core product (which should not have too much flexibility) from plugin functionality.
I've found that the IOC (Inversion of Control) principal (read springframework) works well for providing a flexible base, which you can add specialization to to make plugin development simpler.
You can scan the container for the "interface as a plugin type advertisement" mechanism.
You can use the container to inject common dependencies which plugins may require (i.e. ResourceLoaderAware or MessageSourceAware).
The Plug-in Pattern is a software pattern for extending the behaviour of a class with a clean interface. Often behaviour of classes is extended by class inheritance, where the derived class overwrites some of the virtual methods of the class. A problem with this solution is that it conflicts with implementation hiding. It also leads to situations where derived class become a gathering places of unrelated behaviour extensions. Also, scripting is used to implement this pattern as mentioned above "Make internals as a scripting language and write all the top level stuff in that language. This makes it quite modifiable and practically future proof". Libraries use script managing libraries. The scripting language allows high-level manipulation of lower level libraries. (Also as mentioned above)