Save concatenated images in MATLAB - matlab

I am trying to concatenate two 256x256 images and save them using imwrite. The saved image is supposed to be 256x512, but when I load the saved image, the size shows to be 343x434x3. How do I solve this?
the code I am using is:
new_name3 = strcat(f_name_image, '\', kk, '_', num2str(ff), '_pair.png');
pair = [orig_im noisy_image]; %concatenating two 256x256 images
imagesc(pair)
f = getframe(gca);
im = frame2im(f);
imwrite(im, new_name3);

Saving the image from the frame can be lossy without configuring additional options. To retain the pixel information save the concatenated image directly from the pair (here Image_Pair) array. Also, the third dimension in 343x434x3 represents the RGB colour channels of the image.
%Grabbing the two images%
Image_1 = imread('Image_1.jpeg');
Image_2 = imread('Image_2.jpeg');
%The file name for the concantenated images%
New_File_Name = "Image_3.jpeg";
%Concatenating the images%
Image_Pair = [Image_1 Image_2];
%Displaying the image pair%
imshow(Image_Pair);
%Saving the image to the "New_File_Name"%
imwrite(Image_Pair, New_File_Name);
%Loading the saved image to see if dimensions are consistent%
Saved_Image = imread('Image_3.jpeg');

Related

Unable to save iverseftt image and image K-Space in matlab

I have a brain MRi image in .png format. I read the image and extract the K-Space and set some of the K-Space as 0
img_fft = fftshift(fft2(img));
sizes = size(img_fft);
row_half = sizes(1)/2;
flag = true;
for r = row_half:sizes(1)
for c = 1:sizes(2)
img_fft(r,c) = 0+1i*0;
end
end
After this I change the image back to image space using
img_back = ifft2(ifftshift(img_fft));
and after this I cast the image to uint8 as that was the original image format.
When I try to plot my image using imshow() I get a different output compared to when I write the image using imwrite. Also if I use abs(img_back) in imwrite I get an error.
Error using abs: Complex integers are not supported.
My plotting code is below:
img_back = ifft2(ifftshift(img_fft));
img_back = cast(img_back,'uint8');
subplot(1,3,1), imshow(img)
subplot(1,3,2), imshow(img_back)
subplot(1,3,3), imshow(abs(img_fft),[])
imwrite(abs(img_back),'back_img.png','png')
Can someone tell me what I am doing wrong here?
Take absolute value after inverse Fourier transform and then cast the result to uint8 type:
img_back = abs(ifft2(ifftshift(img_fft)));
img_back = cast(img_back,'uint8');

read and show raw depth image in matlab

I have a set of .raw depth images. The image format is 500X290 with 32 bytes per pixel. When I open them with IrfanView image viewer I see the depth image correctly like this:
displayed image in IrfanView
Now I want to read and display the same depth image in Matlab. I do like this:
FID=fopen('depthImage.raw','r');
DepthImage = fread(FID,[290,500],'bit32');
fclose(FID);
colormap winter;
imshow(DepthImage);
DepthImage is a 290X500 type double matrix.
what I get from this code is this image:
displayed image in Matlab viewer
when I change fread parameter from 'bit32' to 'bit24' I get this:
displayed image in Matlab with bit24
I guess each element in DepthImage contains 32 bits where each 8 bits corresponds to R,G,B and D values. but how can I read the image correctly and display it like the one in IrfanView?
the raw file: https://drive.google.com/file/d/1aHcRmMKvi5gtodahR5l_Dx8SbK_920c5/view?usp=sharing
There might be an issue with image metadata header, like "date and time of the shot", "camera type". Open your image with notepad++ to check for "date and time". If you upload your original raw image, it will be easier to try things.
Upd: Ok, this is something. Check if it helps
FID=fopen('camera00000000000014167000.raw','r');
DepthImage = fread(FID,290*500*4,'int8');
DepthImageR = DepthImage(1:4:end);
DepthImageG = DepthImage(2:4:end);
DepthImageB = DepthImage(3:4:end);
DepthImageD = DepthImage(4:4:end);
dataR = reshape(DepthImageR, 500,290);
dataG = reshape(DepthImageG, 500,290);
dataB = reshape(DepthImageB, 500,290);
dataD = reshape(DepthImageD, 500,290); % all equal to 64 - useless
figure()
subplot(2,2,1)
image(dataR)
subplot(2,2,2)
image(dataG)
subplot(2,2,3)
image(dataB)
subplot(2,2,4)
data = zeros(500,290,3);
data(:,:,1) = dataR;
data(:,:,2) = dataG;
data(:,:,3) = dataB;
image(data)

Matlab imageset method order of read and name of image?

%% Load images from folder
% Use imageSet to manage images stored in multiple folders
imset = imageSet('pet_images','recursive');
% Preallocate arrays with fixed size for prediction
imageSize = cnnModel.net.normalization.imageSize;
trainingImages = zeros([imageSize sum([imset(:).Count])],'single');
% Load and resize images for prediction
for ii = 1:numel(imset)
for jj = 1:imset(ii).Count
imshow(read(imset(ii),jj));
trainingImages(:,:,:,jj) = imresize(single(read(imset(ii),jj)),imageSize(1:2));
end
end
I want to read images from a directory. But it gives me error some images.
Assignment has fewer non-singleton rhs dimensions than non-singleton subscripts
I use breakpoint to find which image has a problem. When it gives error, I catch the index of the image and show this image.
I find this image from this directory. it's order is 1061 (orders according to name) but value of jj is 1012.
I have three Question.
Why it gives this error? (The resolution of (error) image :
(263x380))
In order to find the image, I check with the image and same type
cats. In for loop, Can I got the name of this image.?
While imageset read the directory, what according to read it
(name,type,date, etc...)? Why the row number (1061) and index(1012)
are mismatches?
if the image is grayscale, it gives error.
Because rgb image is expected by trainingImages array.
getting the name of image, you can use code below;
imshow(read(imset(ii),jj));
a = select(imset(ii),jj);
str = cellstr(a(1,1).ImageLocation);
title(str);
Because imageset orders alphabetically but different way(name) For example.
Directory order : img1, img2, img3,... img9, img10, img11... img20, ...
imageSet read order: img1, img2, img3,... img9, img10, img20... img21, ...

Storing two variables image in one variable in matlab

I have an RGB image which I converted into index image using rgb2index. The resultant image is stored in two variable (as matlab requirement). But I want to have it in one variable for further processing. This is what I have tried. The resultant is black.
clc
clear all
close all
%%
I = imread ('Daniel1_SRGB.png');
[in_I,map] = rgb2ind(I,3,'nodither');
imshow (in_I,map)
imwrite (in_I,map,'new_image.PNG','png')
new_I = imread ('new_image.png');
imshow((new_image));
But if do imshow((new_image,map)) it gives me the correct answer. I want it to be independent of variable map.
To convert a indexed image to RGB use:
new_I = ind2rgb(in_I,map)
Not the most elegant solution but this works.
resR = reshape(map(in_I(:)+1,1), size(in_I));
resG = reshape(map(in_I(:)+1,2), size(in_I));
resB = reshape(map(in_I(:)+1,3), size(in_I));
res = cat(3, resR, resG, resB);
imshow(res);
Edit: Modified answer to include rayryeng's improvement.

Read img medical image without header in matlab

I have a radiograph .img file without the header file. However, the researchers who have published the file have given this information about it
High resolution (2048 x 2048 matrix size, 0.175mm pixel size)
Wide density range (12bit, 4096 gray scale)
Universal image format (no header, big-endian raw data)
Using this information, I tried fread command in Matlab to read the image into Matlab.
fid = fopen('image.img','r','B');
oneSlice = fread(fid, [2048 2048], '*uint8','B');
imshow(oneSlice)
However the resulting image is coming up as incorrect. Is there something that I am doing wrong ? Could someone suggest any different method to read this image file ?
The lung x-rays of the JSRT database (www.jsrt.or.jp/jsrt-db/eng.php), have that format. I tested this code with them and it works:
fid = fopen('image.img','r','b');
oneSlice = fread(fid, [2048 2048], '*uint16','b');
img = mat2gray(oneSlice, [0,4096]);
fclose(fid);
%%% Read image
fid = fopen('image.img','r','b');
oneSlice = fread(fid, [2048 2048], '*uint16','b');
img = mat2gray(oneSlice, [0,4096]);
fclose(fid);
%%%rotate image
imgR = imrotate(img,270);
%%%horizontal flip image
imgRF = flipdim(TestImgR ,2);