I want to install the OpenPose files permanently so that I need not install them each time I reopen collab after a break.
I got through some installation code but I dont know how to make the required modifications.
import os
from os.path import exists, join, basename, splitext
git_repo_url = 'https://github.com/CMU-Perceptual-Computing-Lab/openpose.git'
project_name = splitext(basename(git_repo_url))[0]
if not exists(project_name):
# see: https://github.com/CMU-Perceptual-Computing-Lab/openpose/issues/949
# install new CMake becaue of CUDA10
!wget -q https://cmake.org/files/v3.13/cmake-3.13.0-Linux-x86_64.tar.gz
!tar xfz cmake-3.13.0-Linux-x86_64.tar.gz --strip-components=1 -C /usr/local
# clone openpose
!git clone -q --depth 1 $git_repo_url
!sed -i 's/execute_process(COMMAND git checkout master WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}\/3rdparty\/caffe)/execute_process(COMMAND git checkout f019d0dfe86f49d1140961f8c7dec22130c83154 WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}\/3rdparty\/caffe)/g' openpose/CMakeLists.txt
# install system dependencies
!apt-get -qq install -y libatlas-base-dev libprotobuf-dev libleveldb-dev libsnappy-dev libhdf5-serial-dev protobuf-compiler libgflags-dev libgoogle-glog-dev liblmdb-dev opencl-headers ocl-icd-opencl-dev libviennacl-dev
# install python dependencies
!pip install -q youtube-dl
# build openpose
!cd openpose && rm -rf build || true && mkdir build && cd build && cmake .. && make -j`nproc`
from IPython.display import YouTubeVideo
Can somebody please help me solve this issue.
When you say that you want to install openpose permanently, I assume that you mean you want to install it onto your google drive rather than having it installed into temporary files each time you run the code above in colab.
To install openpose on your google drive, rather than on the temporary colab storage:
(1) Mount your gdrive. Add this block of code prior to the block that you posted in your question above.
#Connect your google gdrive
from google.colab import drive
drive.mount('/content/drive')
(2) Change the directory to your gdrive. Add the following line to your code just after you've imported the dependencies but before the first line of the code block.
#Change the drive to your mounted gdrive
%cd /content/drive/MyDrive
This should install openpose on your permanent gdrive so that you can call openpose in the future from this location.
Related
There is a project on github called Fpocket. This project is not being installed with "pip install ...", but developers share installation commands for conda.
conda config --add channels conda-forge
conda install fpocket
I could not open the project from Google colab as described here (StackOverflow)
Also solution below doesn't work (mentioned here (StackOverflow)
!pip install git+https://github.com/Discngine/fpocket
I am getting an error like
ERROR: File "setup.py" not found for legacy project
git+https://github.com/Discngine/fpocket.
Github project link is here
How can I use this project in Google Colab?
You can install fpocket with the following set of commands:
WARNING: initial run will take about 5 minutes or so to install conda and fpocket.
!pip install -q condacolab
import condacolab
condacolab.install()
!conda config --add channels conda-forge
!conda install fpocket
then try running
!fpocket | head -10
to check the installation, in my case I get
***** POCKET HUNTING BEGINS *****
! Invalid pdb name given.
:||: fpocket 4.0 :||:
Mandatory parameters :
fpocket -f --file pdb or cif file
[ fpocket -F --fileList fileList ]
which makes me believe that fpocket is installed is ready to go.
I've cloned a copy of FreeCAD from github and I'm trying to create a docker file so that I can develop it locally on my machine.
The objectives being that:
I have a local copy of the code from git on my machine
I can make modifications to the code
I can build debug and release image (do I need to create two separate images?)
Have access to the code on my machine, so that I can use git for source control
This is the content of my Dockerfile:
# Get base image
FROM phusion/baseimage
# Use baseimage-docker's init system.
CMD ["/sbin/my_init"]
# Get the build pre-requisites
RUN apt-get update
RUN apt-get install -y build-essential cmake python python-matplotlib libtool
RUN apt-get install -y libcoin80-dev libsoqt4-dev
RUN apt-get install -y libxerces-c-dev libboost-dev libboost-filesystem-dev
RUN apt-get install -y libboost-regex-dev
RUN apt-get install -y libboost-program-options-dev libboost-signals-dev
RUN apt-get install -y libboost-thread-dev libboost-python-dev libqt4-dev
RUN apt-get install -y libqt4-opengl-dev qt4-dev-tools python-dev
RUN apt-get install -y python-pyside pyside-tools
RUN apt-get install -y liboce*-dev oce-draw
RUN apt-get install -y libeigen3-dev libqtwebkit-dev libshiboken-dev
RUN apt-get install -y libpyside-dev libode-dev swig libzipios++-dev
RUN apt-get install -y libfreetype6 libfreetype6-dev
# to make Coin to support additional image file formats
RUN apt-get install -y libsimage-dev
# to register your installed files into your system's package manager, so yo can easily uninstall later
RUN apt-get install -y checkinstall
# needed for the 2D Drafting module
RUN apt-get install -y python-qt4 python-pivy
# doxygen and libcoin80-doc (if you intend to generate source code documentation)
RUN apt-get install -y doxygen libcoin80-doc
# libspnav-dev (for 3Dconnexion devices support like the Space Navigator or Space Pilot)
RUN apt-get install -y libspnav-dev
# CMAke related issue for compiling on Ubuntu Xenial: http://forum.freecadweb.org/viewtopic.php?f=4&t=16292
RUN apt-get install -y libmedc-dev
RUN apt-get install -y libvtk6-dev
RUN apt-get install -y libproj-dev
# Get git
RUN apt-get install -y git
RUN git clone https://github.com/FreeCAD/FreeCAD.git freecad
RUN cd freecad
RUN mkdir freecad-debug
RUN cd freecad-debug
# command below is just a diagnostic to let me know wth I am (output is: /)
# RUN pwd
RUN cmake ../ -DFREECAD_USE_EXTERNAL_PIVY=1 -DCMAKE_BUILD_TYPE=Debug .
#cmake -DFREECAD_USE_EXTERNAL_PIVY=1 -DCMAKE_BUILD_TYPE=Release .
RUN make
I attempt to build the image using the following command:
docker build -tag freeCAD-my-fork .
Everything works until I get to the first cmake invocation. I then get the following error:
CMake Error: The source directory "/" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
The command '/bin/sh -c cmake ../ -DFREECAD_USE_EXTERNAL_PIVY=1 -DCMAKE_BUILD_TYPE=Debug .' returned a non-zero code: 1
I placed a RUN pwd in my Dockerfile, so I could find where the cmake command was being run from, and I was surprised to find that it was been run from the root directory.
I thought the issue was being caused by my use of relative and that it would be fixed by absolute paths - however specifying /path/to/my/copy/freecad when cloning etc, the issue remains.
How can I write my Dockerfile so that it achieves the objectives outlined above (stated at the beginning of my question)?
Default WORKDIR in docker is "/".All docker commands will be executed in that directory.There are two option either you change WORKDIR(https://docs.docker.com/engine/reference/builder/#workdir) or execute everything in one layer(In one RUN command).I have taken second approach.
Cloning and Building source code both executed in One layer of docker.
RUN git clone https://github.com/FreeCAD/FreeCAD.git freecad \
&& cd freecad \
&& mkdir freecad-debug \
&& cd freecad-debug \
&& cmake ../ -DFREECAD_USE_EXTERNAL_PIVY=1 -DCMAKE_BUILD_TYPE=Debug . \
&& make
You should install all your dependencies using run as you do but the actual building and copying of source code files should not happen when you build your image but when you run a container.
This way you can reuse your image for as many builds as you like.
Write a script with the build commands and copy it over to your image. Then in the CMD part of the dockerfile run that script.
To share the git project with the container you can mount your local files with docker run -v hostpath:containerpath imagename. That way any files in hostpath will be visible to the container at containerpath and vice versa. Alternatively you could also git clone from the script which is invoked by CMD but then you have to expose the build somehow to your host (some mounted volume again).
I want to install wkhtmltopdf library inside /home/dev directory, and I can't touch anything else outside of this directory, because it's not my server.
The file has .deb extension, I have run in /home/dev:
$ wget "http://file-to-install.com/"
$ dpkg -x my_file.deb
So the file exists. Now I want to run:
$ dpkg -i my_file.deb
Which will install it, but my question is - does this install the library only inside this dev folder, without touching anything else?
You should refer to How to extract RPM or DEB packages, which is linked to from the FAQ on the downloads page:
ar p wkhtmltox.deb data.tar.xz | tar zx
I'm installing this package into a virtualenv using virtualenvwrapper and pip with this command:
pip install -e git+git://github.com/mr-stateradio/django-exchange.git#egg=django_exchange-master
Interestingly the package is then placed into a src folder, and not into the site-packages folder which I would have expected. The package is placed into this folder:
<path-to-my-virtual-env>/testenv/src/django-exchange-master/exchange
Instead of this:
<path-to-my-virtual-env>/testenv/lib/python2.7/site-packages
I assume something is wrong with the pip install command I'm using or with the setup.py of the package.
The -e option tells pip to install packages in “editable” mode. If you remove the -e option, pip will install the package into <venv path>/lib/Python_version/site-packages. Don't forget to remove the packages inside <venv path>/src, because python looks for the packages inside <venv path>/src first.
pip supports installing from Git, Mercurial, Subversion and Bazaar, and detects the type of VCS using url prefixes: “git+”, “hg+”, “bzr+”, “svn+”.
e.g
$ pip install -e git+https://git.repo/some_pkg.git#egg=SomePackage # from git
$ pip install -e hg+https://hg.repo/some_pkg.git#egg=SomePackage # from mercurial
$ pip install -e svn+svn://svn.repo/some_pkg/trunk/#egg=SomePackage # from svn
$ pip install -e git+https://git.repo/some_pkg.git#feature#egg=SomePackage # from 'feature' branch
VCS projects can be installed in editable mode (using the –editable option) or not.
For editable installs, the clone location by default is <venv path>/src/SomeProject in virtual environments, and <cwd>/src/SomeProject for global installs. The –src option can be used to modify this location.
For non-editable installs, the project is built locally in a temp dir and then installed normally. `
I have researched and viewed the post to install luamongo- http://groups.google.com/group/luamongo/browse_thread/thread/1eaa56974614dc90/c91c842e241aa4de#c91c842e241aa4de
But the installation will not work. I already have mongodb-10gen version 2.0.3 and lua5.1 version 5.1.4.10 installed.
How do I download luamongo from https://github.com/moai/luamongo and install it and get it working as an import statement in a lua script to be able to write to a mongo db? Any suggestions would be helpful, nothing I have tried so far or read has been able to help. If more information is needed I will post it. Thanks in advance.
I got this script from a friend of mine which should be helpful:
# Download mongodb and driver
wget http://downloads.mongodb.org/cxx-driver/mongodb-linux-x86_64-v2.0-latest.tgz
wget http://fastdl.mongodb.org/linux/mongodb-linux-x86_64-2.0.2.tgz
# Extract each
tar xvzf mongodb-linux-x86_64-2.0.2.tgz
tar xvzf mongodb-linux-x86_64-v2.0-latest.tgz
# Add mongo bin to PATH
export PATH=$PATH:~/mongodb-linux-x86_64-2.0.2/bin
# Grab dev tools and dependencies (May need to run apt-get update to download all)
sudo apt-get -y install tcsh scons libpcre++-dev libboost-dev libreadline-dev libboost-program-options-dev libboost-thread-dev libboost-filesystem-dev libboost-date-time-dev gcc g++ git lua5.1-dev make
# Grab latest luamongo (will need to add your github ssh key)
git clone git#github.com:moai/luamongo
# Compile mongo driver
cd mongo-cxx-driver-v2.0
sudo scons install
# Install where lua can load it
sudo cp libmongoclient.* /usr/lib