PySpark UDF: a fir transform example - pyspark

I am really new to PySpark and am trying to translate some python code into pyspark.
I start with a panda, convert to a document - term matrix and then apply PCA.
The UDF:
class MultiLabelCounter():
def __init__(self, classes=None):
self.classes_ = classes
def fit(self,y):
self.classes_ =
sorted(set(itertools.chain.from_iterable(y)))
self.mapping = dict(zip(self.classes_,
range(len(self.classes_))))
return self
def transform(self,y):
yt = []
for labels in y:
data = [0]*len(self.classes_)
for label in labels:
data[self.mapping[label]] +=1
yt.append(data)
return yt
def fit_transform(self,y):
return self.fit(y).transform(y)
mlb = MultiLabelCounter()
df_grouped =
df_grouped.withColumnRenamed("collect_list(full)","full")
udf_mlb = udf(lambda x: mlb.fit_transform(x),IntegerType())
mlb_fitted = df_grouped.withColumn('full',udf_mlb(col("full")))
I am of course getting NULL results.
I am using spark 2.4.4 version.
EDIT
Adding sample input and output as per request
Input:
|id|val|
|--|---|
|1|[hello,world]|
|2|[goodbye, world]|
|3|[hello,hello]|
Output:
|id|hello|goodbye|world|
|--|-----|-------|-----|
|1|1|0|1|
|2|0|1|1|
|3|2|0|0|

Based upon input data shared, I tried replicating your output and it works. Please see below -
Input Data
df = spark.createDataFrame(data=[(1, ['hello', 'world']), (2, ['goodbye', 'world']), (3, ['hello', 'hello'])], schema=['id', 'vals'])
df.show()
+---+----------------+
| id| vals|
+---+----------------+
| 1| [hello, world]|
| 2|[goodbye, world]|
| 3| [hello, hello]|
+---+----------------+
Now, using explode to create separate rows out of vals list items. Thereafter, using pivot and count will calculate the frequency. Finally, replacing null values with 0 using fillna(0). See below -
from pyspark.sql.functions import *
df1 = df.select(['id', explode(col('vals'))]).groupBy("id").pivot("col").agg(count(col("col")))
df1.fillna(0).orderBy("id").show()
Output
+---+-------+-----+-----+
| id|goodbye|hello|world|
+---+-------+-----+-----+
| 1| 0| 1| 1|
| 2| 1| 0| 1|
| 3| 0| 2| 0|
+---+-------+-----+-----+

Related

create a simple DF after reading a parquet file

I am a new developer on Scala and I met some problems to write a simple code on Spark Scala. I have this DF that I get after reading a parquet file :
ID Timestamp
1 0
1 10
1 11
2 20
3 15
And what I want is to create a DF result from the first DF (if the ID = 2 for example, the timestamp should be multiplied by two). So, I created a new class :
case class OutputData(id: bigint, timestamp:bigint)
And here is my code :
val tmp = spark.read.parquet("/user/test.parquet").select("id", "timestamp")
val outputData:OutputData = tmp.map(x:Row => {
var time_result
if (x.getString("id") == 2) {
time_result = x.getInt(2)* 2
}
if (x.getString("id") == 1) {
time_result = x.getInt(2) + 10
}
OutputData2(x.id, time_result)
})
case class OutputData2(id: bigint, timestamp:bigint)
Can you help me please ?
To make the implementation easier, you can cast your df using a case class, the process that Dataset with object notation instead of access to your row each time that you want the value of some element. Apart of that, based on your input and output will take have same format you can use same case class instead of define 2.
Code looks like:
// Sample intput data
val df = Seq(
(1, 0L),
(1, 10L),
(1, 11L),
(2, 20L),
(3, 15L)
).toDF("ID", "Timestamp")
df.show()
// Case class as helper
case class OutputData(ID: Integer, Timestamp: Long)
val newDF = df.as[OutputData].map(record=>{
val newTime = if(record.ID == 2) record.Timestamp*2 else record.Timestamp // identify your id and apply logic based on that
OutputData(record.ID, newTime)// return same format with updated values
})
newDF.show()
The output of above code:
// original
+---+---------+
| ID|Timestamp|
+---+---------+
| 1| 0|
| 1| 10|
| 1| 11|
| 2| 20|
| 3| 15|
+---+---------+
// new one
+---+---------+
| ID|Timestamp|
+---+---------+
| 1| 0|
| 1| 10|
| 1| 11|
| 2| 40|
| 3| 15|
+---+---------+

how to convert assembler vector to data frame?

I just used VectorAssembler to normalize my features for a ML application.
def kmeansClustering ( k : Int ) : sql.DataFrame = {
val assembler = new VectorAssembler()
.setInputCols(this.listeOfName())
.setOutputCol("features")
val intermediaireDF = assembler
.transform(this.filterNumeric())
.select("features")
val kmeans = new KMeans().setK(k).setSeed(1L)
val model = kmeans.fit(intermediaireDF)
val predictions = model.transform(intermediaireDF)
return(predictions)
}
as a result I got a 2 vectors dataframe:
+--------------------+----------+
| features|prediction|
+--------------------+----------+
|[-27.482279,153.0...| 0|
|[-27.47059,153.03...| 2|
|[-27.474531,153.0...| 3|
.................................
So I want to perform something like avg and std by group for each column but the features are assembled and I can't do manipulation on them.
I've tried to use org.apache.spark.ml.feature.VectorDisassembler, but it did not work.
val disassembler = new VectorDisassembler().setInputCol("vectorCol")
disassembler.transform(df).show()
Any suggestion ?
Actually you do not need to remove the original columns to perform your clustering.
// creating sample data
val df = spark.range(10).select('id as "a", 'id %3 as "b")
val assembler = new VectorAssembler()
.setInputCols(Array("a", "b")).setOutputCol("features")
// Here I delete the select so as to keep all the columns
val intermediaireDF = assembler.transform(this.filterNumeric())
// I specify explicitely what the feature column is
val kmeans = new KMeans().setK( 2 ).setSeed(1L).setFeaturesCol("features")
// And the rest remains unchanged
val model = kmeans.fit(intermediaireDF)
val predictions = model.transform(intermediaireDF)
predictions.show(6)
+---+---+----------+----------+
| a| b| features|prediction|
+---+---+----------+----------+
| 1| 0| [1.0,0.0]| 1|
| 2| 1| [2.0,1.0]| 1|
| 3| 2| [3.0,2.0]| 1|
| 4| 0| [4.0,0.0]| 1|
| 5| 1| [5.0,1.0]| 0|
| 6| 2| [6.0,2.0]| 0|
+---+---+----------+----------+
And from there, you can compute what you need.

Sum columns of a Spark dataframe and create another dataframe

I have a dataframe like below -
I am trying to create another dataframe from this which has 2 columns - the column name and the sum of values in each column like this -
So far, I've tried this (in Spark 2.2.0) but throws a stack trace -
val get_count: (String => Long) = (c: String) => {
df.groupBy("id")
.agg(sum(c) as "s")
.select("s")
.collect()(0)
.getLong(0)
}
val sqlfunc = udf(get_count)
summary = summary.withColumn("sum_of_column", sqlfunc(col("c")))
Are there any other alternatives of accomplishing this task?
I think that the most efficient way is to do an aggregation and then build a new dataframe. That way you avoid a costly explode.
First, let's create the dataframe. BTW, it's always nice to provide the code to do it when you ask a question. This way we can reproduce your problem in seconds.
val df = Seq((1, 1, 0, 0, 1), (1, 1, 5, 0, 0),
(0, 1, 0, 6, 0), (0, 1, 0, 4, 3))
.toDF("output_label", "ID", "C1", "C2", "C3")
Then we build the list of columns that we are interested in, the aggregations, and compute the result.
val cols = (1 to 3).map(i => s"C$i")
val aggs = cols.map(name => sum(col(name)).as(name))
val agg_df = df.agg(aggs.head, aggs.tail :_*) // See the note below
agg_df.show
+---+---+---+
| C1| C2| C3|
+---+---+---+
| 5| 10| 4|
+---+---+---+
We almost have what we need, we just need to collect the data and build a new dataframe:
val agg_row = agg_df.first
cols.map(name => name -> agg_row.getAs[Long](name))
.toDF("column", "sum")
.show
+------+---+
|column|sum|
+------+---+
| C1| 5|
| C2| 10|
| C3| 4|
+------+---+
EDIT:
NB: df.agg(aggs.head, aggs.tail :_*) may seem strange. The idea is simply to compute all the aggregations computed in aggs. One would expect something more simple like df.agg(aggs : _*). Yet the signature of the agg method is as follows:
def agg(expr: org.apache.spark.sql.Column,exprs: org.apache.spark.sql.Column*)
maybe to ensure that at least one column is used, and this is why you need to split aggs in aggs.head and aggs.tail.
What i do is to define a method to create a struct from the desired values:
def kv (columnsToTranspose: Array[String]) = explode(array(columnsToTranspose.map {
c => struct(lit(c).alias("k"), col(c).alias("v"))
}: _*))
This functions receives a list of columns to transpose (your 3 last columns in your case) and transform them in a struct with the column name as key and the column value as value
And then use that method to create an struct and process it as you want
df.withColumn("kv", kv(df.columns.tail.tail))
.select( $"kv.k".as("column"), $"kv.v".alias("values"))
.groupBy("column")
.agg(sum("values").as("sum"))
First apply the previous defined function to have the desired columns as the said struct, and then deconstruct the struct to have a column key and a column value in each row.
Then you can aggregate by the column name and sum the values
INPUT
+------------+---+---+---+---+
|output_label| id| c1| c2| c3|
+------------+---+---+---+---+
| 1| 1| 0| 0| 1|
| 1| 1| 5| 0| 0|
| 0| 1| 0| 6| 0|
| 0| 1| 0| 4| 3|
+------------+---+---+---+---+
OUTPUT
+------+---+
|column|sum|
+------+---+
| c1| 5|
| c3| 4|
| c2| 10|
+------+---+

Apply UDF function to Spark window where the input paramter is a list of all column values in range

I would like to build a moving average on each row in a window. Let's say -10 rows. BUT if there are less than 10 rows available I would like to insert a 0 in the resulting row -> new column.
So what I would try to achieve is using a UDF in an aggregate window with input paramter List() (or whatever superclass) which has the values of all rows available.
Here's a code example that doesn't work:
val w = Window.partitionBy("id").rowsBetween(-10, +0)
dfRetail2.withColumn("test", udftestf(dfRetail2("salesMth")).over(w))
Expected output: List( 1,2,3,4) if no more rows are available and take this as input paramter for the udf function. udf function should return a calculated value or 0 if less than 10 rows available.
the above code terminates: Expression 'UDF(salesMth#152L)' not supported within a window function.;;
You can use Spark's built-in Window functions along with when/otherwise for your specific condition without the need of UDF/UDAF. For simplicity, the sliding-window size is reduced to 4 in the following example with dummy data:
import org.apache.spark.sql.functions._
import org.apache.spark.sql.expressions.Window
import spark.implicits._
val df = (1 to 2).flatMap(i => Seq.tabulate(8)(j => (i, i * 10.0 + j))).
toDF("id", "amount")
val slidingWin = 4
val winSpec = Window.partitionBy($"id").rowsBetween(-(slidingWin - 1), 0)
df.
withColumn("slidingCount", count($"amount").over(winSpec)).
withColumn("slidingAvg", when($"slidingCount" < slidingWin, 0.0).
otherwise(avg($"amount").over(winSpec))
).show
// +---+------+------------+----------+
// | id|amount|slidingCount|slidingAvg|
// +---+------+------------+----------+
// | 1| 10.0| 1| 0.0|
// | 1| 11.0| 2| 0.0|
// | 1| 12.0| 3| 0.0|
// | 1| 13.0| 4| 11.5|
// | 1| 14.0| 4| 12.5|
// | 1| 15.0| 4| 13.5|
// | 1| 16.0| 4| 14.5|
// | 1| 17.0| 4| 15.5|
// | 2| 20.0| 1| 0.0|
// | 2| 21.0| 2| 0.0|
// | 2| 22.0| 3| 0.0|
// | 2| 23.0| 4| 21.5|
// | 2| 24.0| 4| 22.5|
// | 2| 25.0| 4| 23.5|
// | 2| 26.0| 4| 24.5|
// | 2| 27.0| 4| 25.5|
// +---+------+------------+----------+
Per remark in the comments section, I'm including a solution via UDF below as an alternative:
def movingAvg(n: Int) = udf{ (ls: Seq[Double]) =>
val (avg, count) = ls.takeRight(n).foldLeft((0.0, 1)){
case ((a, i), next) => (a + (next-a)/i, i + 1)
}
if (count <= n) 0.0 else avg // Expand/Modify this for specific requirement
}
// To apply the UDF:
df.
withColumn("average", movingAvg(slidingWin)(collect_list($"amount").over(winSpec))).
show
Note that unlike sum or count, collect_list ignores rowsBetween() and generates partitioned data that can potentially be very large to be passed to the UDF (hence the need for takeRight()). If the computed Window sum and count are sufficient for what's needed for your specific requirement, consider passing them to the UDF instead.
In general, especially if the data at hand is already in DataFrame format, it'd perform and scale better by using built-in DataFrame API to take advantage of Spark's execution engine optimization than using user-defined UDF/UDAF. You might be interested in reading this article re: advantages of DataFrame/Dataset API over UDF/UDAF.

Spark Dataframe - Method to take row as input & dataframe has output

I need to write a method that iterates all the rows from DF2 and generate a Dataframe based on some conditions.
Here is the inputs DF1 & DF2 :
val df1Columns = Seq("Eftv_Date","S_Amt","A_Amt","Layer","SubLayer")
val df2Columns = Seq("Eftv_Date","S_Amt","A_Amt")
var df1 = List(
List("2016-10-31","1000000","1000","0","1"),
List("2016-12-01","100000","950","1","1"),
List("2017-01-01","50000","50","2","1"),
List("2017-03-01","50000","100","3","1"),
List("2017-03-30","80000","300","4","1")
)
.map(row =>(row(0), row(1),row(2),row(3),row(4))).toDF(df1Columns:_*)
+----------+-------+-----+-----+--------+
| Eftv_Date| S_Amt|A_Amt|Layer|SubLayer|
+----------+-------+-----+-----+--------+
|2016-10-31|1000000| 1000| 0| 1|
|2016-12-01| 100000| 950| 1| 1|
|2017-01-01| 50000| 50| 2| 1|
|2017-03-01| 50000| 100| 3| 1|
|2017-03-30| 80000| 300| 4| 1|
+----------+-------+-----+-----+--------+
val df2 = List(
List("2017-02-01","0","400")
).map(row =>(row(0), row(1),row(2))).toDF(df2Columns:_*)
+----------+-----+-----+
| Eftv_Date|S_Amt|A_Amt|
+----------+-----+-----+
|2017-02-01| 0| 400|
+----------+-----+-----+
Now I need to write a method that filters DF1 based on the Eftv_Date values from each row of DF2.
For example, first row of df2.Eftv_date=Feb 01 2017, so need to filter df1 having records Eftv_date less than or equal to Feb 01 2017.So this will generate 3 records as below:
Expected Result :
+----------+-------+-----+-----+--------+
| Eftv_Date| S_Amt|A_Amt|Layer|SubLayer|
+----------+-------+-----+-----+--------+
|2016-10-31|1000000| 1000| 0| 1|
|2016-12-01| 100000| 950| 1| 1|
|2017-01-01| 50000| 50| 2| 1|
+----------+-------+-----+-----+--------+
I have written the method as below and called it using map function.
def transformRows(row: Row ) = {
val dateEffective = row.getAs[String]("Eftv_Date")
val df1LayerMet = df1.where(col("Eftv_Date").leq(dateEffective))
df1 = df1LayerMet
df1
}
val x = df2.map(transformRows)
But while calling this I am facing this error:
Error:(154, 24) Unable to find encoder for type stored in a Dataset. Primitive types (Int, String, etc) and Product types (case classes) are supported by importing spark.implicits._ Support for serializing other types will be added in future releases.
val x = df2.map(transformRows)
Note : We can implement this using join , But I need to implement a custom scala method to do this , since there were a lot of transformations involved. For simplicity I have mentioned only one condition.
Seems you need a non-equi join:
df1.alias("a").join(
df2.select("Eftv_Date").alias("b"),
df1("Eftv_Date") <= df2("Eftv_Date") // non-equi join condition
).select("a.*").show
+----------+-------+-----+-----+--------+
| Eftv_Date| S_Amt|A_Amt|Layer|SubLayer|
+----------+-------+-----+-----+--------+
|2016-10-31|1000000| 1000| 0| 1|
|2016-12-01| 100000| 950| 1| 1|
|2017-01-01| 50000| 50| 2| 1|
+----------+-------+-----+-----+--------+