Can WAL replications cause locks? - postgresql

Running, under version 10, a setup of 1 master and 3 physcal replicas with their corresponding replication slots.
A stubborn provider that manages our ERP is becoming quite annoying assuring that the cause for some locks that they find when performing certain operations in the master are the replication (WalSenderMain status) threads.
I know that such a thing is not possible, but I haven't found in PostgreSQL documentation, or online, anything saying so. Also, I've found nothing searching about such a thing.
So because you never can now... Is such a thing even possible?
We're telling them that the cause must be long-running queries that are always present when they try to do other things. They blame the replication "because if we restart PostgreSQL we can do it right away"... Precisely! Because then you end those long-running queries. But I'd like to be able to explain that in a more proffesional way.
Thanks.

Related

RDS Postgres "canceling statement due to conflict with recovery" [duplicate]

I'm getting the following error when running a query on a PostgreSQL db in standby mode. The query that causes the error works fine for 1 month but when you query for more than 1 month an error results.
ERROR: canceling statement due to conflict with recovery
Detail: User query might have needed to see row versions that must be removed
Any suggestions on how to resolve? Thanks
No need to touch hot_standby_feedback. As others have mentioned, setting it to on can bloat master. Imagine opening transaction on a slave and not closing it.
Instead, set max_standby_archive_delay and max_standby_streaming_delay to some sane value:
# /etc/postgresql/10/main/postgresql.conf on a slave
max_standby_archive_delay = 900s
max_standby_streaming_delay = 900s
This way queries on slaves with a duration less than 900 seconds won't be cancelled. If your workload requires longer queries, just set these options to a higher value.
Running queries on hot-standby server is somewhat tricky — it can fail, because during querying some needed rows might be updated or deleted on primary. As a primary does not know that a query is started on secondary it thinks it can clean up (vacuum) old versions of its rows. Then secondary has to replay this cleanup, and has to forcibly cancel all queries which can use these rows.
Longer queries will be canceled more often.
You can work around this by starting a repeatable read transaction on primary which does a dummy query and then sits idle while a real query is run on secondary. Its presence will prevent vacuuming of old row versions on primary.
More on this subject and other workarounds are explained in Hot Standby — Handling Query Conflicts section in documentation.
There's no need to start idle transactions on the master. In postgresql-9.1 the
most direct way to solve this problem is by setting
hot_standby_feedback = on
This will make the master aware of long-running queries. From the docs:
The first option is to set the parameter hot_standby_feedback, which prevents
VACUUM from removing recently-dead rows and so cleanup conflicts do not occur.
Why isn't this the default? This parameter was added after the initial
implementation and it's the only way that a standby can affect a master.
As stated here about hot_standby_feedback = on :
Well, the disadvantage of it is that the standby can bloat the master,
which might be surprising to some people, too
And here:
With what setting of max_standby_streaming_delay? I would rather
default that to -1 than default hot_standby_feedback on. That way what
you do on the standby only affects the standby
So I added
max_standby_streaming_delay = -1
And no more pg_dump error for us, nor master bloat :)
For AWS RDS instance, check http://docs.aws.amazon.com/AmazonRDS/latest/UserGuide/Appendix.PostgreSQL.CommonDBATasks.html
The table data on the hot standby slave server is modified while a long running query is running. A solution (PostgreSQL 9.1+) to make sure the table data is not modified is to suspend the replication and resume after the query:
select pg_xlog_replay_pause(); -- suspend
select * from foo; -- your query
select pg_xlog_replay_resume(); --resume
I'm going to add some updated info and references to #max-malysh's excellent answer above.
In short, if you do something on the master, it needs to be replicated on the slave. Postgres uses WAL records for this, which are sent after every logged action on the master to the slave. The slave then executes the action and the two are again in sync. In one of several scenarios, you can be in conflict on the slave with what's coming in from the master in a WAL action. In most of them, there's a transaction happening on the slave which conflicts with what the WAL action wants to change. In that case, you have two options:
Delay the application of the WAL action for a bit, allowing the slave to finish its conflicting transaction, then apply the action.
Cancel the conflicting query on the slave.
We're concerned with #1, and two values:
max_standby_archive_delay - this is the delay used after a long disconnection between the master and slave, when the data is being read from a WAL archive, which is not current data.
max_standby_streaming_delay - delay used for cancelling queries when WAL entries are received via streaming replication.
Generally, if your server is meant for high availability replication, you want to keep these numbers short. The default setting of 30000 (milliseconds if no units given) is sufficient for this. If, however, you want to set up something like an archive, reporting- or read-replica that might have very long-running queries, then you'll want to set this to something higher to avoid cancelled queries. The recommended 900s setting above seems like a good starting point. I disagree with the official docs on setting an infinite value -1 as being a good idea--that could mask some buggy code and cause lots of issues.
The one caveat about long-running queries and setting these values higher is that other queries running on the slave in parallel with the long-running one which is causing the WAL action to be delayed will see old data until the long query has completed. Developers will need to understand this and serialize queries which shouldn't run simultaneously.
For the full explanation of how max_standby_archive_delay and max_standby_streaming_delay work and why, go here.
It might be too late for the answer but we face the same kind of issue on the production.
Earlier we have only one RDS and as the number of users increases on the app side, we decided to add Read Replica for it. Read replica works properly on the staging but once we moved to the production we start getting the same error.
So we solve this by enabling hot_standby_feedback property in the Postgres properties.
We referred the following link
https://aws.amazon.com/blogs/database/best-practices-for-amazon-rds-postgresql-replication/
I hope it will help.
Likewise, here's a 2nd caveat to #Artif3x elaboration of #max-malysh's excellent answer, both above.
With any delayed application of transactions from the master the follower(s) will have an older, stale view of the data. Therefore while providing time for the query on the follower to finish by setting max_standby_archive_delay and max_standby_streaming_delay makes sense, keep both of these caveats in mind:
the value of the follower as a standby / backup diminishes
any other queries running on the follower may return stale data.
If the value of the follower for backup ends up being too much in conflict with hosting queries, one solution would be multiple followers, each optimized for one or the other.
Also, note that several queries in a row can cause the application of wal entries to keep being delayed. So when choosing the new values, it’s not just the time for a single query, but a moving window that starts whenever a conflicting query starts, and ends when the wal entry is finally applied.

Can Cassandra or ScyllaDB give incomplete data while reading with PySpark if either clusters are left un-repaired forever?

I use both Cassandra and ScyllaDB 3-node clusters and use PySpark to read data. I was wondering if any of them are not repaired forever, is there any challenge while reading data from either if there are inconsistencies in nodes. Will the correct data be read and if yes, then why do we need to repair them?
Yes you can get incorrect data if reapir is not done. It also depends on with what consistency you are reading or writing. Generally in production systems writes are done with (Local_one/Local_quorum) and read with Local_quorum.
If you are writing with weak consistency level, then repair becomes important as some of the nodes might not have got the mutations and while reading those nodes may get selected.
For example if you write with consistency level ONE on a table TABLE1 with a replication of 3. Now it may happen your write was written to NodeA only and NodeB and NodeC might have missed the mutation. Now if you are reading with Consistency level LOCAL_QUORUM, it may happen that NodeB and 'NodeC' get selected and they do not return the written data.
Repair is an important maintenance task for Cassandra which should be done periodically and continuously to keep data in healthy state.
As others have noted in other answers, different consistency levels make repair more or less important for different reasons. So I'll focus on the consistency level that you said in a comment you are using: LOCAL_ONE for reading and LOCAL_QUORUM for writing:
Successfully writing with LOCAL_QUORUM only guarantees that two replicas have been written. If the third replica is temporarily down, and will later come up - at that point one third of the read requests for this data, reads done from only one node (this is what LOCAL_ONE means) will miss the new data! Moreover, there isn't even a guarantee of so-called monotonic consistency - you can get new data in one read (from one node), and the old data in a later read (from another node).
However, it isn't completely accurate that only a repair can fix this problem. Another feature - enabled by default on both Cassandra and Scylla - is called Hinted Handoff - where when a node is down for relatively short time (up to three hours, but also depending on the amount of traffic in that period), other nodes which tried to send it updates remember those updates - and retry the send when the dead node comes back up. If you are faced only with such relatively short downtimes, repair isn't necessary and Hinted Handoff is actually enough.
That being said, Hinted Handoff isn't guaranteed perfect and might miss some inconsistencies. E.g., the node wishing to save a hint might itself be rebooted before it managed to save the hint, or replaced after saving it. So this mechanism isn't completely foolproof.
By the way, there another thing you need to be aware of: If you ever intend to do a repair (e.g., perhaps after some node was down for too long for Hinted Handoff to have worked, or perhaps because a QUORUM read causes a read repair), you must do it at least once every gc_grace_seconds (this defaults to 10 days).
The reason for this statement is the risk of data resurrection by repair which is too infrequent. The thing is, after gc_grace_seconds, the tombstones marking deleted items are removed forever ("garbage collected"). At that point, if you do a repair and one of the nodes happens to have an old version of this data (prior to the delete), the old data will be "resurrected" - copied to all replicas.
In addition to Manish's great answer, I'll just add that read operations run consistency levels higher than *_ONE have a (small...10% default) chance to invoke a read repair. I have seen that applications running at a higher consistency level for reads, will have less issues with inconsistent replicas.
Although, writing at *_QUORUM should ensure that the majority (quorum) of replicas are indeed consistent. Once it's written successfully, data should not "go bad" over time.
That all being said, running periodic (weekly) repairs is a good idea. I highly recommend using Cassandra Reaper to manage repairs, especially if you have multiple clusters.

MongoDB what's the best practice for setting write concern for consistent reads

I'm not an expert of mongo, just using our company's mongo cluster as my database. There're three hosts in the cluster. I usually encounter a data inconsistent problem: query right after I insert but got nothing.
So I set write concern with option 'w' : 3 to all my insert operation. That gives my expected results.
Yesterday one of host is down, leaving two alive hosts in the cluster. All read-only operation is good, but since my insert operation required 'w': 3 write concern, so they're blocking forever.
I think setting w option to the number of all machines is not a good idea, I should not expect all host in the cluster to be alive, or even more, I believe my code should not have those details about the cluster, the node failure is handled inside the cluster. But data consistency is super important to me, how should I config the write concern options?
Use write concern 'majority' to ensure your writes are replicated to the majority of the members.
Couple with read concern 'majority' gives you read-your-own-writes consistency.
See Causal Consistency and Read and Write Concerns

Is MongoDB v2.6's WriteConcern "Broken"?

Edit - Possible Duplicate: To what extent are 'lost data' criticisms still valid of MongoDB? - If I had just punched something into Google differently, I more-or-less would've had this question answered. Sorry for the semi-dupe everyone.
I hate asking this question here as I'm not 100% sure if it conforms to this site's guidelines or not. If it doesn't, I do apologize. Currently I am looking to build an application and was seriously considering MongoDB as the datastore until I came across the two articles below.
My question is specifically in relation to Emir's first-described issue (Emin Gun Sirer responding to MongoDB CTO Jared Rosoff's response to Emin's original article detailing how MongoDB is broken):
MongoDB Is Broken (Original):
http://hackingdistributed.com/2013/01/29/mongo-ft/
MongoDB Is Broken (Response to Rosoff):
http://hackingdistributed.com/2013/02/07/10gen-response/
These articles are dated a good year and a half ago now. I have been trying to determine if MongoDB's WriteConcern is still broken (e.g., MongoDB is still not fault tolerant in the way Emin describes in Issue #1), but it appears most of the comments and articles surrounding this topic died out about as quickly as they sprang up (dead silence after February or May as far as I can tell with Google).
I understand now that MongoDB has set the default WriteConcern to ReceiptAcknowledged, but apparently this (and the even more consistent/fault-tolerant option, Journaled) does not guarantee that a write operation has been written to disk on more than one node.
Could someone please tell me if MongoDB now has a WriteConcern setting that confirms a write operation has been written to disk on more than one node?
Thanks in advance, and again I apologize if I'm asking this question in the wrong place.
Yes, you can set the write concern to w=majority to ensure that the application does not consider the write committed until it would be durable in the face of a single node failure. Here is the relevant documentation:
http://docs.mongodb.org/manual/core/replica-set-write-concern/
w=majority guarantees that a majority of nodes have acknowledged the write, but not that a majority have written it to disk. You can also guarantee that the primary node has written it to disk.
Going through the scenario of a three node replica set where you set j=1 (journaled at the primary) and w=majority and wait for the majority ack before considering the write to be persistent:
If primary node fails and you have received an acknowledgement, the write is on the primary's disk and on failover, the furthest forward secondary, who has also seen your write (we know a majority have seen it), will become primary. The secondary may not have yet written the write to disk at the moment of failure, but will soon. We assumed only single node failure so have implicitly assumed that the secondary does not fail. Your write persists.
If a secondary node fails, no election will occur. The primary won't change. Your write persists

Slony-I replication CPU usage

I have recently had to install slony (version 2.0.2) at work. Everything works fine, however, my boss would like to lower the cpu usage on slave nodes during replication. Searching on the net does not reveal any blatantly obvious answers to this. Any suggestions that would help reduce CPU usage (or spread the update out over a longer period) would be very much appreciated!
Have you looked into general PostgreSQL tuning here? The server can waste a lot of CPU cycles doing redundant work if it's not given enough resources to work with, and the default config is extremely small. Tuning Your PostgreSQL Server is a useful guide here, shared_buffers and checkpoint_segments are the two parameters you might get some significant improvement from on a slave (many of the rest only really help for improving query time).
Magnus might be right, this could very well just be a symptom of the fact that your database has very high traffic. Slony effectively multiplies the resource usage of any given DML operation: not only is data CRUD'ed to the replication master, but every time that happens, a Slony trigger (think of it as a change listener) generates an identical transaction and forwards it to the Slon process, which runs it on other members of the cluster.
However, there are two other possible explanations/solutions to this issue:
A possible solution might be to run the slon processes on a separate machine from your database hosts. Even if you have a single-master/single-slave replication scheme, it is advantageous in terms of stability, role-segregation, and performance (that’s you) to run the slon replication daemons on a physically different set of hardware (on the same LAN segment, ideally). There is nothing about Slony that says it has to run on the same machine as a given database host, so putting it in a different location (think “traffic controller”) might relieve some of the resource load on your database hosts. This is also a good idea in terms of both machine stability and scalability.
There's also a chance that this is only a temporary problem caused by the fact that you recently started using Slony. When you first subscribe a new node to a replication set, that node (and, to some extent, its parent) experiences VERY heavy CPU load (and possibly disk load as well) during the subscription process. I'm not sure how it works under the covers, but, depending on how much data was already on the node subscribed, Slony will either check the master’s data against every single piece of data present on the slave in tables that are replicated, and copy data down to the slave if it is missing or different. These are potentially CPU-intensive operations. Especially in large databases, the process of subscription can take a very long time (it took over a day for me, but our database is over 20GB), during which CPU load will be very high. A simple way to see what Slony is up to is to use pgAdmin’s Server Status viewer, which, while limited, will give you some useful info here. If there are a lot of “prepare table for replication” or “cleanup table after replication” operations in progress on the node that has a high CPU load, it’s probably because a subscription isn’t complete. pgAdmin’s status viewer isn’t too informative, however; there are more reliable ways of checking subscription progress using Slony directly. Section 4.7.6.4 in the Slony log-analysis documentation might help with that, as would reading the doc for SUBSCRIBE SET (pay special attention to the boxed warning message, and the "Dangerous/Unintuitive Behavior" section. A simple yet definitive hack to tell whether a set is still in the process of subscriptions is to run a MERGE SET and try to merge it with an empty (or not) other set. MERGE SET will fail with a "subscriptions in progress" error if subscription is still running. However, that hack won't work on Slony 2.1; MERGE SET will just wait until subscriptions are finished.
The best way to reduce the CPU usage would be to put less data into the database :-)
Other than that, you can experiment with sync_interval. It may be what you're looking for.