Within JBOSS 7.1 AS, I'm using container managed transaction. For each request, I do several entity updates. Most of the entities use "insert, merge, refresh" methods from EntityManager to manage the updates. However, there is one entity that uses explicit Query to do "executeUpdate" on the DB (see below for the code snippet). This sql update is immediately commited to the DB and it is not aligned with container managed transaction (like other entity updates). Is there anyway align explicit sql update (the one below) with container-managed-transaction? I'm trying to get rollback to work and this sql update is not being rolledback. All other entity updates and inserts are working fine except this one. Thanks for all your help.
code snippet:
entityManager.createQuery
( "UPDATE Balance a SET a.balanceValue = :newValue WHERE a.balanceId =:balanceId AND a.balanceValue = :currentValue" ) .setParameter("balanceId", cb.getBalanceId()) .setParameter("currentValue", cb.getBalanceValue()).setParameter("newValue", newAmt).executeUpdate();
Additional code: (Code below is using Bean-managed transaction, but i get same behaviour for CMT as well)
ut.begin();
ChargingBalance bal2 = entityManager.find(ChargingBalance.class, 13);
bal2.setResetValue((new Date()).getTime());
String UPDATE_BALANCE_AND_EXPIRYDATE_EQUAL = "UPDATE ChargingBalanceValue a"
+ " SET a.balanceValue = :newValue "
+ " WHERE a.balanceId = :balanceId";
Query query = entityManager.createQuery(UPDATE_BALANCE_AND_EXPIRYDATE_EQUAL)
.setParameter("balanceId", 33)
.setParameter("newValue", 1000l);
/*The executeUpdate command gets committed to DB before ut.commit is executed */
query.executeUpdate();
/* This below only commits changes on ResetValue */
ut.commit();
ut.begin();
ChargingBalance bal = entityManager.find(ChargingBalance.class, 23);
bal.setResetValue(1011l);
query = entityManager.createQuery(UPDATE_BALANCE_AND_EXPIRYDATE_EQUAL)
.setParameter("balanceId", 33)
.setParameter("newValue", 2000l);
query.executeUpdate();
/* This rollback doesn't rollback changes executed by executeUpdate, but it rollbacks ResetValue change */
ut.rollback();
The executeUpdate command gets committed to DB before ut.commit is
executed
It might have probably flushed changes into the database, but not committed as you were in BMT.
You can try roll back & verify if it is really committed & is within transaction.
This below only commits changes on ResetValue
When you execute native or JPQL/HQL query, it will make changes directly into the database & EntityManager might not be aware of those changes.
Therefore managed entities aren't refreshed implicitly by EntityManager & might contain outdated/stale data.
You can go through documentation for more details, below is the exerpt.
JPQL UPDATE queries provide an alternative way for updating entity
objects. Unlike SELECT queries, which are used to retrieve data from
the database, UPDATE queries do not retrieve data from the database,
but when executed, update the content of specified entity objects in
the database.
Updating entity objects in the database using an UPDATE query may be
slightly more efficient than retrieving entity objects and then
updating them, but it should be used cautiously because bypassing the
EntityManager may break its synchronization with the database. For
example, the EntityManager may not be aware that a cached entity
object in its persistence context has been modified by an UPDATE
query. Therefore, it is a good practice to use a separate
EntityManager for UPDATE queries.
In my application I need most objects fetched in detached mode (fetched with the find API).
I'm wondering if there is a way to ask a detached object from the JPA provider and save the extra call to detach() API.
In additional I would expect the object created in such mode to be less expensive since the JPA provider doesn't need to add it to the entity manager context.
Is there a way to achieve this with JPA APIs?
Is there a way to achieve such functionality with query results?
Specifically I'm using Eclipse Link so if there is a specific way to do it with this implementation it will be helpful as well.
You can fetch a detached entity without an extra call to detach() if you fetch it outside a transaction. If you are not using container-managed transactions, it's trivial, simply do not start a transaction.
If you are using CMT, you have to make sure the requesting object is not a transaction-enabled EJB:
if in an EJB, suspend the transaction by annotating the appropriate method with:#TransactionAttribute(TransactionAttributeType.NOT_SUPPORTED),
or
call the EntityManager from a POJO. You dont have to call it directly, it only impotrant that the query result will end in a non-EJB object.
AFAIK, there is no performance gain to be expected, since the query result will always be put in the current persistence context, however shortlived it may be.
EDIT: There is another possibility to get detached objects which does not depend on transaction demarcations: JPA constructor expressions:
List<DTO> dtos = em.createQuery("SELECT NEW com.example.DTO( o.title, o.version) FROM Entity o").getResultList();
The constructed type must have a constructor with all the relevant attributes. The objects in the list, entities or not, will always be created detached. However there is a small overhead of instantiating a new object.
I have an EJB, whose method (among other things) persists JPA entity. If the method throws an error, the transaction is rolled back and the entity is not persisted.
However, I do want that entity to be persisted regardless of any exceptions, that might occur in the EJB method.
I'm using WebSphere 7.0, EJB3.0, JPA 1.0 (OpenJPA that is in WAS), DB2, if it matters.
I tried setting #TransactionAttribute(TransactionAttributeType.NOT_SUPPORTED) on top of EJB; with that, entity is not persisted even if there is no exception. I also tried commiting transaction myself (em.getTransaction().commit()), but getTransaction() throws exception (because transactions are managed by container).
Use bean-managed transactions.
#Stateless
#TransactionManagement(TransactionManagementType.BEAN)
public class MyEJB {
#PersistenceContext(unitName="...")
private EntityManager _em;
#Resource
private UserTransaction _utx;
public void myEJBMethod() {
_utx.begin();
// Use _em
_utx.commit();
// Do other work that might throw an exception.
}
}
Alternatively, use TransactionAttributeType.REQUIRES_NEW as suggested by edalorzo.
I am not an expert on EJBs, but I have been dealing with JPA and transactions for a few days now.
I recently answered another question about how entities resided in a context, and how this works in Java EE applications, the context is linked with your JTA transaction.
You can see details of this answer by clicking here. I think it is useful to understand how to context works in order to comprehend the nature of problems like the one you describe.
If you do not provide transaction support, then there is nothing to persist from the container standpoint, and therefore, your changes to the context are transient.
Also you have to consider that once an exception occurs, your context becomes invalid, and the entities in it get detached. (There are a few exceptions to this, like NoResultException).
Thus, from that point on, if you want to commit something, you need a new JTA transaction, with a new fresh JPA context in order to be able to commit changes to the database.
As I said, I am not an expert in EJBs, but if your method fails due to exceptions and you still would like to retry the transaction again by re-invoking the method, then you could force a new transaction to be created every time the method is invoked and by this, you would create a new fresh JPA context.
On the other hand, if you want your modifications to the entities to be persisted, regardless of exceptions in the method, then you might like to consider moving the code that is updating the entities to a new EJB method defined to start a new transaction (TransactionAttributeType.REQUIRES_NEW) every time you invoke it.
By the time this second inner method finishes, your work over the transactions will be automatically flushed to the database, regardless of the outer method of you EJB failing.
Basically, you would be providing a new context for your entities, and linking such context to a new transaction, scoped to commit when the inner method completes.
The natural behavior in EJB containers, as far as I understand, is that ever method joins the already existing transaction, and this is what you might like to prevent, from my point of view.
Another alternative: if you want to control your context using a different transaction support then you might like to consider providing a resource-local based persistence unit and you can manually instantiate your entity manager and control transaction scope as you wish. But honestly, this does not sound like a good idea to me, at least no in the context of the problem that you described.
A have a JPA entity that has timestamp field and is distinguished by a complex identifier field. What I need is to update timestamp in an entity that has already been stored, otherwise create and store new entity with the current timestamp.
As it turns out the task is not as simple as it seems from the first sight. The problem is that in concurrent environment I get nasty "Unique index or primary key violation" exception. Here's my code:
// Load existing entity, if any.
Entity e = entityManager.find(Entity.class, id);
if (e == null) {
// Could not find entity with the specified id in the database, so create new one.
e = entityManager.merge(new Entity(id));
}
// Set current time...
e.setTimestamp(new Date());
// ...and finally save entity.
entityManager.flush();
Please note that in this example entity identifier is not generated on insert, it is known in advance.
When two or more of threads run this block of code in parallel, they may simultaneously get null from entityManager.find(Entity.class, id) method call, so they will attempt to save two or more entities at the same time, with the same identifier resulting in error.
I think that there are few solutions to the problem.
Sure I could synchronize this code block with a global lock to prevent concurrent access to the database, but would it be the most efficient way?
Some databases support very handy MERGE statement that updates existing or creates new row if none exists. But I doubt that OpenJPA (JPA implementation of my choice) supports it.
Event if JPA does not support SQL MERGE, I can always fall back to plain old JDBC and do whatever I want with the database. But I don't want to leave comfortable API and mess with hairy JDBC+SQL combination.
There is a magic trick to fix it using standard JPA API only, but I don't know it yet.
Please help.
You are referring to the transaction isolation of JPA transactions. I.e. what is the behaviour of transactions when they access other transactions' resources.
According to this article:
READ_COMMITTED is the expected default Transaction Isolation level for using [..] EJB3 JPA
This means that - yes, you will have problems with the above code.
But JPA doesn't support custom isolation levels.
This thread discusses the topic more extensively. Depending on whether you use Spring or EJB, I think you can make use of the proper transaction strategy.
EntityManager.merge() can insert new objects and update existing ones.
Why would one want to use persist() (which can only create new objects)?
Either way will add an entity to a PersistenceContext, the difference is in what you do with the entity afterwards.
Persist takes an entity instance, adds it to the context and makes that instance managed (i.e. future updates to the entity will be tracked).
Merge returns the managed instance that the state was merged with. It does return something that exists in PersistenceContext or creates a new instance of your entity. In any case, it will copy the state from the supplied entity, and return a managed copy. The instance you pass in will not be managed (any changes you make will not be part of the transaction - unless you call merge again). Though you can use the returned instance (managed one).
Maybe a code example will help.
MyEntity e = new MyEntity();
// scenario 1
// tran starts
em.persist(e);
e.setSomeField(someValue);
// tran ends, and the row for someField is updated in the database
// scenario 2
// tran starts
e = new MyEntity();
em.merge(e);
e.setSomeField(anotherValue);
// tran ends but the row for someField is not updated in the database
// (you made the changes *after* merging)
// scenario 3
// tran starts
e = new MyEntity();
MyEntity e2 = em.merge(e);
e2.setSomeField(anotherValue);
// tran ends and the row for someField is updated
// (the changes were made to e2, not e)
Scenario 1 and 3 are roughly equivalent, but there are some situations where you'd want to use Scenario 2.
Persist and merge are for two different purposes (they aren't alternatives at all).
(edited to expand differences information)
persist:
Insert a new register to the database
Attach the object to the entity manager.
merge:
Find an attached object with the same id and update it.
If exists update and return the already attached object.
If doesn't exist insert the new register to the database.
persist() efficiency:
It could be more efficient for inserting a new register to a database than merge().
It doesn't duplicates the original object.
persist() semantics:
It makes sure that you are inserting and not updating by mistake.
Example:
{
AnyEntity newEntity;
AnyEntity nonAttachedEntity;
AnyEntity attachedEntity;
// Create a new entity and persist it
newEntity = new AnyEntity();
em.persist(newEntity);
// Save 1 to the database at next flush
newEntity.setValue(1);
// Create a new entity with the same Id than the persisted one.
AnyEntity nonAttachedEntity = new AnyEntity();
nonAttachedEntity.setId(newEntity.getId());
// Save 2 to the database at next flush instead of 1!!!
nonAttachedEntity.setValue(2);
attachedEntity = em.merge(nonAttachedEntity);
// This condition returns true
// merge has found the already attached object (newEntity) and returns it.
if(attachedEntity==newEntity) {
System.out.print("They are the same object!");
}
// Set 3 to value
attachedEntity.setValue(3);
// Really, now both are the same object. Prints 3
System.out.println(newEntity.getValue());
// Modify the un attached object has no effect to the entity manager
// nor to the other objects
nonAttachedEntity.setValue(42);
}
This way only exists 1 attached object for any register in the entity manager.
merge() for an entity with an id is something like:
AnyEntity myMerge(AnyEntity entityToSave) {
AnyEntity attached = em.find(AnyEntity.class, entityToSave.getId());
if(attached==null) {
attached = new AnyEntity();
em.persist(attached);
}
BeanUtils.copyProperties(attached, entityToSave);
return attached;
}
Although if connected to MySQL merge() could be as efficient as persist() using a call to INSERT with ON DUPLICATE KEY UPDATE option, JPA is a very high level programming and you can't assume this is going to be the case everywhere.
If you're using the assigned generator, using merge instead of persist can cause a redundant SQL statement, therefore affecting performance.
Also, calling merge for managed entities is also a mistake since managed entities are automatically managed by Hibernate, and their state is synchronized with the database record by the dirty checking mechanism upon flushing the Persistence Context.
To understand how all this works, you should first know that Hibernate shifts the developer mindset from SQL statements to entity state transitions.
Once an entity is actively managed by Hibernate, all changes are going to be automatically propagated to the database.
Hibernate monitors currently attached entities. But for an entity to become managed, it must be in the right entity state.
To understand the JPA state transitions better, you can visualize the following diagram:
Or if you use the Hibernate specific API:
As illustrated by the above diagrams, an entity can be in one of the following four states:
New (Transient)
A newly created object that hasn’t ever been associated with a Hibernate Session (a.k.a Persistence Context) and is not mapped to any database table row is considered to be in the New (Transient) state.
To become persisted we need to either explicitly call the EntityManager#persist method or make use of the transitive persistence mechanism.
Persistent (Managed)
A persistent entity has been associated with a database table row and it’s being managed by the currently running Persistence Context. Any change made to such an entity is going to be detected and propagated to the database (during the Session flush-time).
With Hibernate, we no longer have to execute INSERT/UPDATE/DELETE statements. Hibernate employs a transactional write-behind working style and changes are synchronized at the very last responsible moment, during the current Session flush-time.
Detached
Once the currently running Persistence Context is closed all the previously managed entities become detached. Successive changes will no longer be tracked and no automatic database synchronization is going to happen.
To associate a detached entity to an active Hibernate Session, you can choose one of the following options:
Reattaching
Hibernate (but not JPA 2.1) supports reattaching through the Session#update method.
A Hibernate Session can only associate one Entity object for a given database row. This is because the Persistence Context acts as an in-memory cache (first level cache) and only one value (entity) is associated with a given key (entity type and database identifier).
An entity can be reattached only if there is no other JVM object (matching the same database row) already associated with the current Hibernate Session.
Merging
The merge is going to copy the detached entity state (source) to a managed entity instance (destination). If the merging entity has no equivalent in the current Session, one will be fetched from the database.
The detached object instance will continue to remain detached even after the merge operation.
Remove
Although JPA demands that managed entities only are allowed to be removed, Hibernate can also delete detached entities (but only through a Session#delete method call).
A removed entity is only scheduled for deletion and the actual database DELETE statement will be executed during Session flush-time.
I noticed that when I used em.merge, I got a SELECT statement for every INSERT, even when there was no field that JPA was generating for me--the primary key field was a UUID that I set myself. I switched to em.persist(myEntityObject) and got just INSERT statements then.
The JPA specification says the following about persist().
If X is a detached object, the EntityExistsException may be thrown when the persist
operation is invoked, or the EntityExistsException or another PersistenceException may be thrown at flush or commit time.
So using persist() would be suitable when the object ought not to be a detached object. You might prefer to have the code throw the PersistenceException so it fails fast.
Although the specification is unclear, persist() might set the #GeneratedValue #Id for an object. merge() however must have an object with the #Id already generated.
Some more details about merge which will help you to use merge over persist:
Returning a managed instance other than the original entity is a critical part of the merge
process. If an entity instance with the same identifier already exists in the persistence context, the
provider will overwrite its state with the state of the entity that is being merged, but the managed
version that existed already must be returned to the client so that it can be used. If the provider did not
update the Employee instance in the persistence context, any references to that instance will become
inconsistent with the new state being merged in.
When merge() is invoked on a new entity, it behaves similarly to the persist() operation. It adds
the entity to the persistence context, but instead of adding the original entity instance, it creates a new
copy and manages that instance instead. The copy that is created by the merge() operation is persisted
as if the persist() method were invoked on it.
In the presence of relationships, the merge() operation will attempt to update the managed entity
to point to managed versions of the entities referenced by the detached entity. If the entity has a
relationship to an object that has no persistent identity, the outcome of the merge operation is
undefined. Some providers might allow the managed copy to point to the non-persistent object,
whereas others might throw an exception immediately. The merge() operation can be optionally
cascaded in these cases to prevent an exception from occurring. We will cover cascading of the merge()
operation later in this section. If an entity being merged points to a removed entity, an
IllegalArgumentException exception will be thrown.
Lazy-loading relationships are a special case in the merge operation. If a lazy-loading
relationship was not triggered on an entity before it became detached, that relationship will be
ignored when the entity is merged. If the relationship was triggered while managed and then set to null while the entity was detached, the managed version of the entity will likewise have the relationship cleared during the merge."
All of the above information was taken from "Pro JPA 2 Mastering the Java™ Persistence API" by Mike Keith and Merrick Schnicariol. Chapter 6. Section detachment and merging. This book is actually a second book devoted to JPA by authors. This new book has many new information then former one. I really recommed to read this book for ones who will be seriously involved with JPA. I am sorry for anonimously posting my first answer.
There are some more differences between merge and persist (I will enumerate again those already posted here):
D1. merge does not make the passed entity managed, but rather returns another instance that is managed. persist on the other side will make the passed entity managed:
//MERGE: passedEntity remains unmanaged, but newEntity will be managed
Entity newEntity = em.merge(passedEntity);
//PERSIST: passedEntity will be managed after this
em.persist(passedEntity);
D2. If you remove an entity and then decide to persist the entity back, you may do that only with persist(), because merge will throw an IllegalArgumentException.
D3. If you decided to take care manually of your IDs (e.g by using UUIDs), then a merge
operation will trigger subsequent SELECT queries in order to look for existent entities with that ID, while persist may not need those queries.
D4. There are cases when you simply do not trust the code that calls your code, and in order to make sure that no data is updated, but rather is inserted, you must use persist.
JPA is indisputably a great simplification in the domain of enterprise
applications built on the Java platform. As a developer who had to
cope up with the intricacies of the old entity beans in J2EE I see the
inclusion of JPA among the Java EE specifications as a big leap
forward. However, while delving deeper into the JPA details I find
things that are not so easy. In this article I deal with comparison of
the EntityManager’s merge and persist methods whose overlapping
behavior may cause confusion not only to a newbie. Furthermore I
propose a generalization that sees both methods as special cases of a
more general method combine.
Persisting entities
In contrast to the merge method the persist method is pretty straightforward and intuitive. The most common scenario of the persist method's usage can be summed up as follows:
"A newly created instance of the entity class is passed to the persist method. After this method returns, the entity is managed and planned for insertion into the database. It may happen at or before the transaction commits or when the flush method is called. If the entity references another entity through a relationship marked with the PERSIST cascade strategy this procedure is applied to it also."
The specification goes more into details, however, remembering them is not crucial as these details cover more or less exotic situations only.
Merging entities
In comparison to persist, the description of the merge's behavior is not so simple. There is no main scenario, as it is in the case of persist, and a programmer must remember all scenarios in order to write a correct code. It seems to me that the JPA designers wanted to have some method whose primary concern would be handling detached entities (as the opposite to the persist method that deals with newly created entities primarily.) The merge method's major task is to transfer the state from an unmanaged entity (passed as the argument) to its managed counterpart within the persistence context. This task, however, divides further into several scenarios which worsen the intelligibility of the overall method's behavior.
Instead of repeating paragraphs from the JPA specification I have prepared a flow diagram that schematically depicts the behaviour of the merge method:
So, when should I use persist and when merge?
persist
You want the method always creates a new entity and never updates an entity. Otherwise, the method throws an exception as a consequence of primary key uniqueness violation.
Batch processes, handling entities in a stateful manner (see Gateway pattern).
Performance optimization
merge
You want the method either inserts or updates an entity in the database.
You want to handle entities in a stateless manner (data transfer objects in services)
You want to insert a new entity that may have a reference to another entity that may but may not be created yet (relationship must be marked MERGE). For example, inserting a new photo with a reference to either a new or a preexisting album.
I was getting lazyLoading exceptions on my entity because I was trying to access a lazy loaded collection that was in session.
What I would do was in a separate request, retrieve the entity from session and then try to access a collection in my jsp page which was problematic.
To alleviate this, I updated the same entity in my controller and passed it to my jsp, although I imagine when I re-saved in session that it will also be accessible though SessionScope and not throw a LazyLoadingException, a modification of example 2:
The following has worked for me:
// scenario 2 MY WAY
// tran starts
e = new MyEntity();
e = em.merge(e); // re-assign to the same entity "e"
//access e from jsp and it will work dandy!!
I found this explanation from the Hibernate docs enlightening, because they contain a use case:
The usage and semantics of merge() seems to be confusing for new users. Firstly, as long as you are not trying to use object state loaded in one entity manager in another new entity manager, you should not need to use merge() at all. Some whole applications will never use this method.
Usually merge() is used in the following scenario:
The application loads an object in the first entity manager
the object is passed up to the presentation layer
some modifications are made to the object
the object is passed back down to the business logic layer
the application persists these modifications by calling merge() in a second entity manager
Here is the exact semantic of merge():
if there is a managed instance with the same identifier currently associated with the persistence context, copy the state of the given object onto the managed instance
if there is no managed instance currently associated with the persistence context, try to load it from the database, or create a new managed instance
the managed instance is returned
the given instance does not become associated with the persistence context, it remains detached and is usually discarded
From: http://docs.jboss.org/hibernate/entitymanager/3.6/reference/en/html/objectstate.html
Going through the answers there are some details missing regarding `Cascade' and id generation. See question
Also, it is worth mentioning that you can have separate Cascade annotations for merging and persisting: Cascade.MERGE and Cascade.PERSIST which will be treated according to the used method.
The spec is your friend ;)
Scenario X:
Table:Spitter (One) ,Table: Spittles (Many) (Spittles is Owner of the relationship with a FK:spitter_id)
This scenario results in saving : The Spitter and both Spittles as if owned by Same Spitter.
Spitter spitter=new Spitter();
Spittle spittle3=new Spittle();
spitter.setUsername("George");
spitter.setPassword("test1234");
spittle3.setSpittle("I love java 2");
spittle3.setSpitter(spitter);
dao.addSpittle(spittle3); // <--persist
Spittle spittle=new Spittle();
spittle.setSpittle("I love java");
spittle.setSpitter(spitter);
dao.saveSpittle(spittle); //<-- merge!!
Scenario Y:
This will save the Spitter, will save the 2 Spittles But they will not reference the same Spitter!
Spitter spitter=new Spitter();
Spittle spittle3=new Spittle();
spitter.setUsername("George");
spitter.setPassword("test1234");
spittle3.setSpittle("I love java 2");
spittle3.setSpitter(spitter);
dao.save(spittle3); // <--merge!!
Spittle spittle=new Spittle();
spittle.setSpittle("I love java");
spittle.setSpitter(spitter);
dao.saveSpittle(spittle); //<-- merge!!
Another observation:
merge() will only care about an auto-generated id(tested on IDENTITY and SEQUENCE) when a record with such an id already exists in your table. In that case merge() will try to update the record.
If, however, an id is absent or is not matching any existing records, merge() will completely ignore it and ask a db to allocate a new one. This is sometimes a source of a lot of bugs. Do not use merge() to force an id for a new record.
persist() on the other hand will never let you even pass an id to it. It will fail immediately. In my case, it's:
Caused by: org.hibernate.PersistentObjectException: detached entity
passed to persist
hibernate-jpa javadoc has a hint:
Throws: javax.persistence.EntityExistsException - if the entity
already exists. (If the entity already exists, the
EntityExistsException may be thrown when the persist operation is
invoked, or the EntityExistsException or another PersistenceException
may be thrown at flush or commit time.)
You may have come here for advice on when to use persist and when to use merge. I think that it depends the situation: how likely is it that you need to create a new record and how hard is it to retrieve persisted data.
Let's presume you can use a natural key/identifier.
Data needs to be persisted, but once in a while a record exists and an update is called for. In this case you could try a persist and if it throws an EntityExistsException, you look it up and combine the data:
try { entityManager.persist(entity) }
catch(EntityExistsException exception) { /* retrieve and merge */ }
Persisted data needs to be updated, but once in a while there is no record for the data yet. In this case you look it up, and do a persist if the entity is missing:
entity = entityManager.find(key);
if (entity == null) { entityManager.persist(entity); }
else { /* merge */ }
If you don't have natural key/identifier, you'll have a harder time to figure out whether the entity exist or not, or how to look it up.
The merges can be dealt with in two ways, too:
If the changes are usually small, apply them to the managed entity.
If changes are common, copy the ID from the persisted entity, as well as unaltered data. Then call EntityManager::merge() to replace the old content.
persist(entity) should be used with totally new entities, to add them to DB (if entity already exists in DB there will be EntityExistsException throw).
merge(entity) should be used, to put entity back to persistence context if the entity was detached and was changed.
Probably persist is generating INSERT sql statement and merge UPDATE sql statement (but i'm not sure).
Merge won't update a passed entity, unless this entity is managed. Even if entity ID is set to an existing DB record, a new record will be created in a database.