I want to read a block in zpool storage pool using dd command. Since zpool doesn't create a device file like other volume manager like vxvm. I dunno which block device to use for reading. Is there any way to read block by block data in zpool ?
You can probably use the zdb command. Here is a pdf about it, and the help output.
http://www.bruningsystems.com/osdevcon_draft3.pdf
# zdb --help
zdb: illegal option -- -
Usage: zdb [-CumdibcsDvhL] poolname [object...]
zdb [-div] dataset [object...]
zdb -m [-L] poolname [vdev [metaslab...]]
zdb -R poolname vdev:offset:size[:flags]
zdb -S poolname
zdb -l [-u] device
zdb -C
Dataset name must include at least one separator character '/' or '#'
If dataset name is specified, only that dataset is dumped
If object numbers are specified, only those objects are dumped
Options to control amount of output:
-u uberblock
-d dataset(s)
-i intent logs
-C config (or cachefile if alone)
-h pool history
-b block statistics
-m metaslabs
-c checksum all metadata (twice for all data) blocks
-s report stats on zdb's I/O
-D dedup statistics
-S simulate dedup to measure effect
-v verbose (applies to all others)
-l dump label contents
-L disable leak tracking (do not load spacemaps)
-R read and display block from a device
Below options are intended for use with other options (except -l):
-A ignore assertions (-A), enable panic recovery (-AA) or both (-AAA)
-F attempt automatic rewind within safe range of transaction groups
-U <cachefile_path> -- use alternate cachefile
-X attempt extreme rewind (does not work with dataset)
-e pool is exported/destroyed/has altroot/not in a cachefile
-p <path> -- use one or more with -e to specify path to vdev dir
-P print numbers parsable
-t <txg> -- highest txg to use when searching for uberblocks
Specify an option more than once (e.g. -bb) to make only that option verbose
Default is to dump everything non-verbosely
Unfortunately, I don't know how to use it.
# zdb
tank:
version: 28
name: 'tank'
...
vdev_tree:
...
children[0]:
...
children[0]:
...
path: '/dev/label/bank1d1'
phys_path: '/dev/label/bank1d1'
...
So I took the array indexes 0 0 to get my first disk (bank1d1) and did this command. It did something. I don't know how to read the output.
zdb -R tank 0:0:4e00:200 | strings
Have fun... try not to destroy anything. Here is your warning from the man page:
The zdb command is used by support engineers to diagnose failures and
gather statistics. Since the ZFS file system is always consistent on
disk and is self-repairing, zdb should only be run under the direction
by a support engineer.
And please tell us what you actually were looking for. Was Alan right that you wanted to do backups?
You can read from underlying raw devices in the pool, but as far as I can tell there's no concept of single contiguous block device representing the whole pool.
The pool in ZFS is not a single contiguous block of sectors that 'classic' volume managers are. ZFS internal structure is closer to a tree which would be somewhat challenging to represent as a flat array of blocks.
Ben Rockwood's blog post "zdb: Examining ZFS At Point-Blank Range" may help getting better idea of what's under the hood.
No idea about what might be useful doing so but you certainly can read blocks in the underlying devices used by the pool. They are shown by the zpool status command. If you are really asking about zvols instead of zpools, they are accessible under /dev/zvol/rdsk/pool-name/zvol-name. If you want to look at internal zpool data, you probably want to use zdb.
If you want to backup ZFS filesystems you should be using the following tools:
'zfs snapshot' to create a stable snapshot of the filesystem
'zfs send' to send a copy of the snapshot to somewhere else
'zfs receive' to go back from a snapshot to a filesystem.
'dd' is almost certainly not the tool you should be using. In your case you could 'zfs send' and redirect the output into a file on your other filesystem.
See chapter 7 of the ZFS administration guide for more details.
Related
I am trying to copy files from a directory on my Google Compute Instance to Google Cloud Storage Bucket. I have it working, however there are ~35k files but only ~5k have an data in them.
Is there anyway to only copy files above a certain size?
I've not tried this but...
You should be able to do this using a resumable transfer and setting the threshold to 5k (defaults to 8Mib). See: https://cloud.google.com/storage/docs/gsutil/commands/cp#resumable-transfers
May be advisable to set BOTO_CONFIG specifically for this copy (a) to be intentional; (b) to remind yourself how it works. See: https://cloud.google.com/storage/docs/boto-gsutil
Resumable uploads has the added benefit, of course, of resuming if there are any failures.
Recommend: try this on a small subset and confirm it works to your satisfaction.
While it's not possible to do it only with gsutil, it's possible to do it by parsing the names and use the -I flag on the cp command to process them. If you're using a Linux Compute Engine instance you can perform it by using the du and awk commands:
du * | awk '{if ($1 > 1000) print $2 }' | gsutil -m cp -I gs://bucket2
The command will get the filesize of the files inside the current directory on your compute engine with du * and will only copy the files which size are larger than 1000 bytes to bucket2, you can change that value to adjust it to your needs.
I want to get an idea of how long it will take to copy a csv to a postgresql table. Is there a way to print the rows copied in a reasonable fashion or is there another way to somehow display the progress of the copy?
Perhaps there is a verbose setting or I should use --echo or -qecho
I am using:
psql -U postgres -d nyc_data -h localhost -c "\COPY rides FROM nyc_data_rides.csv CSV"
In Postgres 14, it's now possible to query the status of an active COPY via the internal pg_stat_progress_copy view.
e.g. to watch progress in terms of both bytes and lines processed:
select * from pg_stat_progress_copy \watch 1
Refs:
https://www.postgresql.org/docs/14/progress-reporting.html#COPY-PROGRESS-REPORTING
https://www.depesz.com/2021/01/12/waiting-for-postgresql-14-report-progress-of-copy-commands/
There is no such thing unfortunately.
One idea would be to divide the input into chunks of 1000 or 10000 lines, which you then import one after the other. That wouldn't slow processing considerably, and you can quickly get an estimate how long the whole import is going to take.
use pv tool
pv /tmp/some_table.csv | sudo -u postgres psql -d some_db -c "copy some_table from stdin delimiter ',' null '';"
and as a result, it will show
1.42GiB 0:11:42 [2.06MiB/s] [===================================================================================================================================================================>] 100%
As Laurenz Albe said, there's no way to measure how many time remaining to conclude the entire process. But one thing that I did today to take a good approximation was:
Start the "Monitor System" in my Linux
In this application there's a counter that how many data was uploaded since I started this application
Using the size of the file that I was uploading I made a good prediction about how many data was left to send to the server.
I'm downloading some .mp3 files (all legal) via wget :
wget -r -nc files.myserver.com
I have to stop the download sometimes and at that times the file is partially downloaded. For example a 10 minutes record.mp3 file become 4 minutes record.mp3 file. It's playing correctly but incomplete.
If I use the same command above, because the record.mp3 file is already exist in my local computer wget skips that file although it isn't complete.
I wonder if there is a way to check the file sizes and if the file size in the remote server and local computer isn't same re-download it. (I've learned the --spider command gives the file size but is there any other command that automatically check the file sizes and download or not).
I would go with wget's -N option for timestamping, but note that wget will only compare the file sizes if you also specify the --no-if-modified-since option. Without it, incomplete files are indeed skipped on the next run because they receive a timestamp of the current time, which is newer than that on the server.
The reason is probably that with only -N, a GET request is sent for the file with the If-Modified-Since field set. The server responds with either 200 or 304, but the 304 doesn't contain the file size so wget can't check it.
With --no-if-modified-since wget sends a HEAD request instead to get the timestamp and file size, and checks both.
What I use for recursive download of a folder:
wget -T 300 -nv -t 1 -r -nd -np -l 1 -N --no-if-modified-since -P $my_folder $my_url
With:
-T 300: Set the network timeout to 300 seconds
-nv: Turn off verbose without being completely quiet
-t 1: Set number of tries to 1
-r: Turn on recursive retrieving
-nd: Do not create a hierarchy of directories when retrieving recursively
-np: Do not ever ascend to the parent directory when retrieving recursively
-l 1: Specify recursion maximum depth 1
-N: Turn on time-stamping
--no-if-modified-since: Do not send If-Modified-Since header in ‘-N’ mode, send preliminary HEAD request instead
You may try the -c option to continue the download of partially downloaded files, however the manual gives an explicit warning:
You need to be especially careful of this when using -c in conjunction
with -r, since every file will be considered as an "incomplete
download" candidate.
While there is no perfect solution to this problem you could try to use -N option to turn on timestamping. This might prevent errors when the file has changed on the server but only if the server supports timestamping and partial downloads. Try it and see how it goes.
wget -r -N -c files.myserver.com
If you need check if file was partially downloaded (has different size) or updated on remote server by timestamp and must be in this case updated locally you need use -N option.
Here some additional info about -N (--timestamping) option from Wget docs:
If the local file does not exist, or the sizes of the files do not match, Wget will download the remote file no matter what the
time-stamps say.
Added From: https://www.gnu.org/software/wget/manual/wget.html (Chapter: 5 Time-Stamping)
Im running the gsutil cp command in parallel (with the -m option) on a directory with 25 4gb json files (that i am also compressing with the -z option).
gsutil -m cp -z json -R dir_with_4g_chunks gs://my_bucket/
When I run it, it will print out to terminal that it is copying all but one of the files. By this I mean that it prints one of these lines per file:
Copying file://dir_with_4g_chunks/a_4g_chunk [Content-Type=application/octet-stream]...
Once the transfer for one of them is complete, it says that it'll be copying the last file.
The result of this is that there is one file that only starts to copy only when one of the others finishes copying, significantly slowing down the process
Is there a limit to the number of files I can upload with the -m option? Is this configurable in the boto config file?
I was not able to find the .boto file on my Mac (as per jterrace's answer above), instead I specified these values using the -o switch:
gsutil -m -o "Boto:parallel_thread_count=4" cp directory1/* gs://my-bucket/
This seemed to control the rate of transfer.
From the description of the -m option:
gsutil performs the specified operation using a combination of
multi-threading and multi-processing, using a number of threads and
processors determined by the parallel_thread_count and
parallel_process_count values set in the boto configuration file. You
might want to experiment with these value, as the best value can vary
based on a number of factors, including network speed, number of CPUs,
and available memory.
If you take a look at your .boto file, you should see this generated comment:
# 'parallel_process_count' and 'parallel_thread_count' specify the number
# of OS processes and Python threads, respectively, to use when executing
# operations in parallel. The default settings should work well as configured,
# however, to enhance performance for transfers involving large numbers of
# files, you may experiment with hand tuning these values to optimize
# performance for your particular system configuration.
# MacOS and Windows users should see
# https://github.com/GoogleCloudPlatform/gsutil/issues/77 before attempting
# to experiment with these values.
#parallel_process_count = 12
#parallel_thread_count = 10
I'm guessing that you're on Windows or Mac, because the default values for non-Linux machines is 24 threads and 1 process. This would result in copying 24 of your files first, then the last 1 file afterward. Try experimenting with increasing these values to transfer all 25 files at once.
My question is in two parts :
1) Why does grep hang when I grep all files under "/" ?
for example :
grep -r 'h' ./
(note : right before the hang/crash, I note that I see some "no such device or address" messages , regarding sockets....
Of course, I know that grep shouldn't run against a socket, but I would think that since sockets are just files in Unix, it should return a negative result, rather than crashing.
2) Now, my follow up question : In any case -- how can I grep the whole filesystem? Are there certain *NIX directories which we should leave out when doing this ? In particular, I'm looking for all recently written log files.
As #ninjalj said, if you don't use -D skip, grep will try to read all your device files, socket files, and FIFO files. In particular, on a Linux system (and many Unix systems), it will try to read /dev/zero, which appears to be infinitely long.
You'll be waiting for a while.
If you're looking for a system log, starting from /var/log is probably the best approach.
If you're looking for something that really could be anywhere in your file system, you can do something like this:
find / -xdev -type f -print0 | xargs -0 grep -H pattern
The -xdev argument to find tells it to stay within a single filesystem; this will avoid /proc and /dev (as well as any mounted filesystems). -type f limits the search to ordinary files. -print0 prints the file names separated by null characters rather than newlines; this avoid problems with files having spaces or other funny characters in their names.
xargs reads a list of file names (or anything else) on its standard input and invokes the specified command on everything in the list. The -0 option works with find's -print0.
The -H option to grep tells it to prefix each match with the file name. By default, grep does this only if there are two or more file names on its command line. Since xargs splits its arguments into batches, it's possible that the last batch will have just one file, which would give you inconsistent results.
Consider using find ... -name '*.log' to limit the search to files with names ending in .log (assuming your log files have such names), and/or using grep -I ... to skip binary files.
Note that all this depends on GNU-specific features. Some of these options might not be available on MacOS (which is based on BSD) or on other Unix systems. Consult your local documentation, and consider installing GNU findutils (for find and xargs) and/or GNU grep.
Before trying any of this, use df to see just how big your root filesystem is. Mine is currently 268 gigabytes; searching all of it would probably take several hours. A few minutes spent (a) restricting the files you search and (b) making sure the command is correct will be well worth the time you spend.
By default, grep tries to read every file. Use -D skip to skip device files, socket files and FIFO files.
If you keep seeing error messages, then grep is not hanging. Keep iotop open in a second window to see how hard your system is working to pull all the contents off its storage media into main memory, piece by piece. This operation should be slow, or you have a very barebones system.
Now, my follow up question : In any case -- how can I grep the whole filesystem? Are there certain *NIX directories which we should leave out when doing this ? In particular, Im looking for all recently written log files.
Grepping the whole FS is very rarely a good idea. Try grepping the directory where the log files should have been written; likely /var/log. Even better, if you know anything about the names of the files you're looking for (say, they have the extension .log), then do a find or locate and grep the files reported by those programs.