bdw-gc install failed on lion with brew - osx-lion

i am install w3m with brew on lion. when i use the origin formula the installation is filed.
then i following the issues 7068 of homebrew update the bdw-gc.rb formula script
require 'formula'
class BdwGc < Formula
# url 'http://www.hpl.hp.com/personal/Hans_Boehm/gc/gc_source/gc-7.1.tar.gz'
url 'http://www.hpl.hp.com/personal/Hans_Boehm/gc/gc_source/gc-7.2alpha6.tar.gz'
homepage 'http://www.hpl.hp.com/personal/Hans_Boehm/gc/'
# 7.1
# md5 '2ff9924c7249ef7f736ecfe6f08f3f9b'
# 7.2alpha6
md5 '319d0b18cc4eb735c8038ece9df055e4'
fails_with_llvm "LLVM gives an unsupported inline asm error", :build => 2335
def install
# ucontext has been deprecated in 10.6
# use this flag to force the header to compile
# ENV.append 'CPPFLAGS', "-D_XOPEN_SOURCE" if MacOS.snow_leopard?
ENV.append 'CPPFLAGS', "-D_XOPEN_SOURCE"# if MacOS.snow_leopard?
system "./configure", "--disable-debug", "--disable-dependency-tracking",
"--prefix=#{prefix}"
system "make install"
end
end
and reinstall it, but it's still failed. here is the install log
brew install bdw-gc
==> Downloading http://www.hpl.hp.com/personal/Hans_Boehm/gc/gc_source/gc-7.2alp
File already downloaded in /Users/akira/Library/Caches/Homebrew
==> ./configure --disable-debug --prefix=/usr/local/Cellar/bdw-gc/6
==> make install
........
libtool: compile: /usr/bin/llvm-gcc -DHAVE_CONFIG_H -I./include -I./include -I./libatomic_ops/src -I./libatomic_ops/src -D_XOPEN_SOURCE -fexceptions -O3 -march=core2 -w -pipe -c obj_map.c -o obj_map.o >/dev/null 2>&1
/bin/sh ./libtool --tag=CC --mode=compile /usr/bin/llvm-gcc -DHAVE_CONFIG_H -I./include -I./include -I./libatomic_ops/src -I./libatomic_ops/src -D_XOPEN_SOURCE -fexceptions -O3 -march=core2 -w -pipe -c -o pcr_interface.lo pcr_interface.c
./libatomic_ops/src/atomic_ops/sysdeps/gcc/x86_64.h: In function 'AO_test_and_set_full':
./libatomic_ops/src/ato==> Exit Status: 2
http://github.com/mxcl/homebrew/blob/master/Library/Formula/bdw-gc.rb#L22
==> Environment
HOMEBREW_VERSION: 0.8
HEAD: bc90bd554da6bd1199bdec92a830edbca24fa34e
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_REPOSITORY: /usr/local
HOMEBREW_LIBRARY_PATH: /usr/local/Library/Homebrew
Hardware: quad-core 64-bit sandybridge
OS X: 10.7.2
Kernel Architecture: x86_64
Ruby: 1.8.7-249
/usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby
Xcode: 4.2
GCC-4.0: N/A
GCC-4.2: build 5666
LLVM: build 2336
MacPorts or Fink? false
X11 installed? true
==> Build Flags
CC: /usr/bin/llvm-gcc => /usr/llvm-gcc-4.2/bin/llvm-gcc-4.2
CXX: /usr/bin/llvm-g++ => /usr/llvm-gcc-4.2/bin/llvm-g++-4.2
LD: /usr/bin/llvm-gcc => /usr/llvm-gcc-4.2/bin/llvm-gcc-4.2
CFLAGS: -O3 -march=core2 -w -pipe
CXXFLAGS: -O3 -march=core2 -w -pipe
CPPFLAGS: -D_XOPEN_SOURCE
MAKEFLAGS: -j4
Error: Failed executing: make install
These existing issues may help you:
https://github.com/mxcl/homebrew/issues/7068
Otherwise, please report the bug:
https://github.com/mxcl/homebrew/wiki/checklist-before-filing-a-new-issue
any suggestion?

this problem was fixed by Jack Nagel at Nov 15, 2011.
see the detail
bdw-gc: add 7.2alpha6 as the '--devel' version
but this batch still got a problem. the "make check" step does not works,so you can just skip this step and "make install".

Related

Compiling psqlODBC on CENTOS 7 gives me errors in connection.c - undeclared identifiers

So i'm stuck again.
What I want to do: access a postgreSQL database via database link from Oracle (12.1 - yes, I know it's old ...).
Oracle is running on Centos 7.
Initially I did a
yum -y install postgresql-odbc
yum -y install unixODBC
and was able to access postgreSQL (running on another machine).
But it didn't work for UTF-8 data. Got a hint that this might be due to an old version of unixODBC so I decided to compile from source (as the centos package is rather old).
Compiling and installing unixODBC worked without a hassle:
wget http://www.unixodbc.org/unixODBC-2.3.11.tar.gz
tar xzf unixODBC-2.3.11.tar.gz
cd unixODBC-2.3.11/
./configure
make
make install
But compiling psqlODBC is where it's at:
yum install postgresql
yum install postgresql-devel
wget https://ftp.postgresql.org/pub/odbc/versions/src/psqlodbc-13.02.0000.tar.gz
cd psqlodbc-13.02.0000/
./configure
make
...
Make gives me the following output:
[root#tukanbox psqlodbc-13.02.0000]# make
make all-am
make[1]: Entering directory `/root/psqlodbc-13.02.0000'
/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/include -I/usr/include/pgsql/internal -DUNICODE_SUPPORT -g -O2 -Wall -MT psqlodbcw_la-connection.lo -MD -MP -MF .deps/psqlodbcw_la-connection.Tpo -c -o psqlodbcw_la-connection.lo `test -f 'connection.c' || echo './'`connection.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/include -I/usr/include/pgsql/internal -DUNICODE_SUPPORT -g -O2 -Wall -MT psqlodbcw_la-connection.lo -MD -MP -MF .deps/psqlodbcw_la-connection.Tpo -c connection.c -fPIC -DPIC -o .libs/psqlodbcw_la-connection.o
connection.c: In function 'handle_pgres_error':
connection.c:900:45: error: 'PG_DIAG_SCHEMA_NAME' undeclared (first use in this function)
errschemaname = PQresultErrorField(pgres, PG_DIAG_SCHEMA_NAME);
^
connection.c:900:45: note: each undeclared identifier is reported only once for each function it appears in
connection.c:901:44: error: 'PG_DIAG_TABLE_NAME' undeclared (first use in this function)
errtablename = PQresultErrorField(pgres, PG_DIAG_TABLE_NAME);
^
connection.c:902:45: error: 'PG_DIAG_COLUMN_NAME' undeclared (first use in this function)
errcolumnname = PQresultErrorField(pgres, PG_DIAG_COLUMN_NAME);
^
connection.c:903:47: error: 'PG_DIAG_DATATYPE_NAME' undeclared (first use in this function)
errdatatypename = PQresultErrorField(pgres, PG_DIAG_DATATYPE_NAME);
^
make[1]: *** [psqlodbcw_la-connection.lo] Fehler 1
make[1]: Leaving directory `/root/psqlodbc-13.02.0000'
make: *** [all] Fehler 2
Wondering where to declare these undeclared idenifiers. What does it want to know here? How to solve it?
No answer to the problem of not being able to compile - but an answer to the original problem that the original packages didn't work for UTF8:
https://www.postgresql.org/message-id/OFA166DBFD.19742AF7-ONC1257B6A.005692E6-C1257B6A.0056F890#lladro.net
This has to be done in the database as sysdba:
select fds_class_name from HS_FDS_CLASS;
select * from hs_class_caps where upper(CAP_DESCRIPTION) like '%NCHAR%' and FDS_CLASS_NAME ='ODBC12.1.0.1.0_0017';
exec DBMS_HS.ALTER_CLASS_CAPS('ODBC12.1.0.1.0_0017' , 564, 'ODBC12.1.0.1.0_0017', 564,131071, NULL, NULL);

Install postgres extension PGXN "fatal error: unistd.h: No such file or directory"

I need to sync some postgres tables with elasticsearch and come to conclusion that the best solution for my case is the one described here. Unfortunately I'm still failing to install required postgres extension amqp.
I use docker so I start from image postgres:13-alpine.
Here is how my Dockerfile looks like so far:
FROM postgres:13-alpine
ENV POSTGRES_DB ''
ENV POSTGRES_USER ''
ENV POSTGRES_PASSWORD ''
RUN apk update \
&& apk add py-pip make gcc \
&& pip install pgxnclient
Then when you enter the container and try to run pgxn install pg_amqp you will get following error.
bash-5.1# pgxn install pg_amqp
INFO: best version: pg_amqp 0.3.0
INFO: saving /tmp/tmpgjtefhgh/pg_amqp-0.3.0.zip
INFO: unpacking: /tmp/tmpgjtefhgh/pg_amqp-0.3.0.zip
INFO: building extension
gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wimplicit-fallthrough=3 -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -O2 -fPIC -I. -I./ -I/usr/local/include/postgresql/server -I/usr/local/include/postgresql/internal -D_GNU_SOURCE -I/usr/include/libxml2 -c -o src/pg_amqp.o src/pg_amqp.c
src/pg_amqp.c:36:10: fatal error: unistd.h: No such file or directory
36 | #include <unistd.h>
| ^~~~~~~~~~
compilation terminated.
make: *** [<builtin>: src/pg_amqp.o] Error 1
ERROR: command returned 2: make PG_CONFIG=/usr/local/bin/pg_config all
It seems that I am out of the ideas what to do with that. Any help?
You are missing the musl C library (libc) implementation: musl-dev
RUN apk update \
&& apk add py-pip make gcc musl-dev \
&& pip install pgxnclient

ld unknown option -platform_version while installing perl package

I am trying to install perl package DBD::Pg in my macOS Mojave Version 10.14.6. But I get error for unknown option -platform_version and does not allow make command to continue. How would I be able to solve this? Thank you!
The following is the error I observe
ld: unknown option: -platform_version
clang-10: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [blib/arch/auto/DBD/Pg/Pg.bundle] Error 1
ld version
ld -v
#(#)PROGRAM:ld PROJECT:ld64-450.3
BUILD 18:16:53 Apr 5 2019
configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em
LTO support using: LLVM version 10.0.1, (clang-1001.0.46.4) (static support for 22, runtime is 22)
TAPI support using: Apple TAPI version 10.0.1 (tapi-1001.0.4.1)
clang version
clang -v
clang version 10.0.0
Target: x86_64-apple-darwin18.7.0
Thread model: posix
InstalledDir: /Users/macuser/miniconda3/bin
I updated my Xcode and got clang version 11.0.3 Then I had problems in 'make install' command. I could solve that using the suggestions from the thread https://github.com/bucardo/dbdpg/issues/69 #briandfoy posted. Thank you very much!
I tried this on macOS 10.15.5, perlbrew perl 5.30.1.
First I installed PostgreSQL version 12.3 from
https://www.enterprisedb.com/downloads/postgres-postgresql-downloads
Downloaded the perl module DBD::Pg tarball https://cpan.metacpan.org/authors/id/T/TU/TURNSTEP/DBD-Pg-3.13.0.tar.gz
Installed the package:
$ POSTGRES_HOME=/Library/PostgreSQL/12 perl Makefile.PL
Configuring DBD::Pg 3.13.0
PostgreSQL version: 120003 (default port: 5432)
POSTGRES_HOME: /Library/PostgreSQL/12
POSTGRES_INCLUDE: /Library/PostgreSQL/12/include
POSTGRES_LIB: /Library/PostgreSQL/12/lib
OS: darwin
Checking if your kit is complete...
Looks good
Using DBI 1.643 (for perl 5.030001 on darwin-2level) installed in /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBI/
Generating a Unix-style Makefile
Writing Makefile for DBD::Pg
Writing MYMETA.yml and MYMETA.json
$ make
cp Pg.pm blib/lib/DBD/Pg.pm
cp lib/Bundle/DBD/Pg.pm blib/lib/Bundle/DBD/Pg.pm
Running Mkbootstrap for Pg ()
chmod 644 "Pg.bs"
"/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Pg.bs blib/arch/auto/DBD/Pg/Pg.bs 644
"/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" -p -e "s/~DRIVER~/Pg/g; s/^do\(/dontdo\(/" /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBI/Driver.xst > Pg.xsi
"/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" "/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/ExtUtils/xsubpp" -typemap '/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/ExtUtils/typemap' Pg.xs > Pg.xsc
mv Pg.xsc Pg.c
cc -c -I/Library/PostgreSQL/12/include -I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBI -fno-common -DPERL_DARWIN -mmacosx-version-min=10.15 -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -DPERL_USE_SAFE_PUTENV -DPGLIBVERSION=120003 -DPGDEFPORT=5432 -O3 -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"3.13.0\" -DXS_VERSION=\"3.13.0\" "-I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/darwin-2level/CORE" Pg.c
cc -c -I/Library/PostgreSQL/12/include -I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBI -fno-common -DPERL_DARWIN -mmacosx-version-min=10.15 -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -DPERL_USE_SAFE_PUTENV -DPGLIBVERSION=120003 -DPGDEFPORT=5432 -O3 -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"3.13.0\" -DXS_VERSION=\"3.13.0\" "-I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/darwin-2level/CORE" dbdimp.c
cc -c -I/Library/PostgreSQL/12/include -I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBI -fno-common -DPERL_DARWIN -mmacosx-version-min=10.15 -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -DPERL_USE_SAFE_PUTENV -DPGLIBVERSION=120003 -DPGDEFPORT=5432 -O3 -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"3.13.0\" -DXS_VERSION=\"3.13.0\" "-I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/darwin-2level/CORE" quote.c
cc -c -I/Library/PostgreSQL/12/include -I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBI -fno-common -DPERL_DARWIN -mmacosx-version-min=10.15 -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -DPERL_USE_SAFE_PUTENV -DPGLIBVERSION=120003 -DPGDEFPORT=5432 -O3 -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc -DVERSION=\"3.13.0\" -DXS_VERSION=\"3.13.0\" "-I/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/darwin-2level/CORE" types.c
rm -f blib/arch/auto/DBD/Pg/Pg.bundle
LD_RUN_PATH="/Library/PostgreSQL/12/lib" cc -mmacosx-version-min=10.15 -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector-strong Pg.o dbdimp.o quote.o types.o -o blib/arch/auto/DBD/Pg/Pg.bundle \
-L/Library/PostgreSQL/12/lib -lpq -lm \
chmod 755 blib/arch/auto/DBD/Pg/Pg.bundle
Manifying 2 pod documents
$ make test
"/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00_signature.t ....... skipped: Set the environment variable TEST_SIGNATURE to enable this test
t/00basic.t ............ ok
t/01connect.t .......... Please wait, creating new database (version 12.3) for testing
t/01connect.t .......... 1/15 #
# DBI Version 1.643
# DBD::Pg Version 3.13.0
# Perl Version 5.30.1
# OS darwin
# PostgreSQL (compiled) 120003
# PostgreSQL (target) 120300
# PostgreSQL (reported) PostgreSQL 12.3 on x86_64-apple-darwin, compiled by Apple LLVM version 6.0 (clang-600.0.54) (based on LLVM 3.5svn), 64-bit
# Default port 5432
# DBI_DSN dbi:Pg:db="postgres";port=5440;host=<pwd>/dbdpg_test_database/data/socket
# DBI_USER hakonhaegland
# Test schema dbd_pg_testschema
# LANG C
# Adjusted: initdb
t/01connect.t .......... ok
t/01constants.t ........ ok
t/02attribs.t .......... ok
t/03dbmethod.t ......... ok
t/03smethod.t .......... ok
t/04misc.t ............. ok
t/06bytea.t ............ ok
t/07copy.t ............. ok
t/08async.t ............ ok
t/09arrays.t ........... ok
t/10_pg_error_field.t .. ok
t/12placeholders.t ..... ok
t/20savepoints.t ....... ok
t/30unicode.t .......... ok
t/99cleanup.t .......... ok
All tests successful.
Files=17, Tests=2908, 31 wallclock secs ( 0.55 usr 0.11 sys + 5.99 cusr 2.38 csys = 9.03 CPU)
Result: PASS
$ make install
"/Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- Pg.bs blib/arch/auto/DBD/Pg/Pg.bs 644
Manifying 2 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/auto/DBD/Pg/Pg.bundle
Installing /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/Bundle/DBD/Pg.pm
Installing /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/site_perl/5.30.1/darwin-2level/DBD/Pg.pm
Installing /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/man/man3/Bundle::DBD::Pg.3
Installing /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/man/man3/DBD::Pg.3
Appending installation info to /Users/hakonhaegland/perl5/perlbrew/perls/perl-5.30.1/lib/5.30.1/darwin-2level/perllocal.pod
My compiler version is:
$ cc --version
Apple clang version 11.0.0 (clang-1100.0.33.17)
Target: x86_64-apple-darwin19.5.0
Thread model: posix
InstalledDir: /Library/Developer/CommandLineTools/usr/bin

Installing Neovim through Linuxbrew on AWS

I'm trying to install neovim with linuxbrew on AWS, but I keep getting the following messages, and I can't figure it out :/.
/home/ec2-user/.linuxbrew/bin/libtool: line 10548: /usr/bin/gcc-4.8: No such file or directory
~/dotfiles$ brew install neovim
==> Installing neovim from neovim/neovim
==> Downloading https://github.com/neovim/neovim/archive/v0.1.4.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim-0.1.4.tar.gz
==> Downloading https://github.com/libuv/libuv/archive/v1.8.0.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--libuv-1.8.0.tar.gz
==> Downloading https://github.com/msgpack/msgpack-c/archive/cpp-1.0.0.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--msgpack-1.0.0.tar.gz
==> Downloading https://raw.githubusercontent.com/neovim/deps/master/opt/LuaJIT-2.0.4.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--luajit-2.0.4.tar.gz
==> Downloading https://github.com/keplerproject/luarocks/archive/5d8a16526573b36d5b22aa74866120c998466697.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--luarocks-998466697.tar.gz
==> Downloading https://github.com/mauke/unibilium/archive/v1.2.0.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--unibilium-1.2.0.tar.gz
==> Downloading http://www.leonerd.org.uk/code/libtermkey/libtermkey-0.18.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--libtermkey-0.18.tar.gz
==> Downloading https://github.com/neovim/libvterm/archive/1b745d29d45623aa8d22a7b9288c7b0e331c7088.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--libvterm-7088.tar.gz
==> Downloading https://github.com/jemalloc/jemalloc/releases/download/4.0.2/jemalloc-4.0.2.tar.bz2
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--jemalloc-4.0.2.tar.bz2
==> Building third-party dependencies.
==> cmake ../third-party -DUSE_BUNDLED_BUSTED=OFF -DUSE_BUNDLED_LUV=OFF -DUSE_EXISTING_SRC_DIR=ON -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG -DCMAKE_INSTALL_PREFIX=/home/ec2-user/
==> make VERBOSE=1
Last 15 lines from /home/ec2-user/.cache/Homebrew/Logs/neovim/02.make:
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -Wall -std=c99 -fPIC -c uninames.c -fPIC -DPIC -o .libs/uninames.o
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -Wall -std=c99 -fPIC -c uninames.c -o uninames.o >/dev/null 2>&1
libtool --mode=compile --tag=CC /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -DTERMINFO_DIRS='"/etc/terminfo:/lib/terminfo:/usr/share/terminfo:/usr/lib/terminfo:/usr/local/share/terminfo:/usr/local/lib/terminfo"' -Wall -std=c99 -fPIC -o uniutil.lo -c uniutil.c
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -DTERMINFO_DIRS=\"/etc/terminfo:/lib/terminfo:/usr/share/terminfo:/usr/lib/terminfo:/usr/local/share/terminfo:/usr/local/lib/terminfo\" -Wall -std=c99 -fPIC -c uniutil.c -fPIC -DPIC -o .libs/uniutil.o
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -DTERMINFO_DIRS=\"/etc/terminfo:/lib/terminfo:/usr/share/terminfo:/usr/lib/terminfo:/usr/local/share/terminfo:/usr/local/lib/terminfo\" -Wall -std=c99 -fPIC -c uniutil.c -o uniutil.o >/dev/null 2>&1
libtool --mode=link --tag=CC /home/ec2-user/.linuxbrew/bin/gcc-5 -L/home/ec2-user/.linuxbrew/lib -Wl,--dynamic-linker=/home/ec2-user/.linuxbrew/lib/ld.so -Wl,-rpath,/home/ec2-user/.linuxbrew/lib -rpath '/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build/usr/lib' -version-info 3:0:3 -o libunibilium.la unibilium.lo uninames.lo uniutil.lo
libtool: link: /usr/bin/gcc-4.8 -shared -fPIC -DPIC .libs/unibilium.o .libs/uninames.o .libs/uniutil.o -L/home/ec2-user/.linuxbrew/lib -Wl,--dynamic-linker=/home/ec2-user/.linuxbrew/lib/ld.so -Wl,-rpath -Wl,/home/ec2-user/.linuxbrew/lib -Wl,-soname -Wl,libunibilium.so.0 -o .libs/libunibilium.so.0.3.0
/home/ec2-user/.linuxbrew/bin/libtool: line 10548: /usr/bin/gcc-4.8: No such file or directory
make[3]: *** [libunibilium.la] Error 127
make[3]: Leaving directory `/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build/build/src/unibilium'
make[2]: *** [build/src/unibilium-stamp/unibilium-build] Error 2
make[2]: Leaving directory `/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build'
make[1]: *** [CMakeFiles/unibilium.dir/all] Error 2
make[1]: Leaving directory `/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build'
make: *** [all] Error 2
READ THIS: https://github.com/Linuxbrew/brew/blob/master/share/doc/homebrew/Troubleshooting.md#troubleshooting
If reporting this issue please do so at (not Homebrew/brew):
https://github.com/neovim/homebrew-neovim/issues
These open issues may also help:
Neovim Fails to Install on Standalone Linuxbrew: libmsgpack.so Error https://github.com/neovim/homebrew-neovim/issues/156
Neovim failing to build with homebrew on OS X 10.9.5 https://github.com/neovim/homebrew-neovim/issues/153
Can't install via homebrew-neovim if luarocks path is set explicitly https://github.com/neovim/homebrew-neovim/issues/149
Error when trying to install neovim in my Ubuntu 14.04 virtual machine. https://github.com/neovim/homebrew-neovim/issues/134
I had the same issue. It is a problem of the libtool formula
https://github.com/Linuxbrew/homebrew-core/issues/376
I fixed by doing
brew update
brew reinstall -s libtool
brew install neovim/neovim/neovim

Keys for Net::SSH2

I have a simple perl test script which uses Net::SSH2, and I'm having trouble getting it to work with public key authentication.
Note: After reading a couple of replies, I realise that I should mention that I created the script to help narrow down a problem I was having with another application that uses Net::SSH2. It's therefore not possible for me to switch to an alternative package such as Net::OpenSSH or Net::OpenSSH::Compat::SSH2.
Note Update: As salva pointed out, Net::OpenSSH::Compat::SSH2 can be used without having to patch the original application.
Here's the code:
use strict;
use warnings;
use 5.10.0;
use Net::SSH2;
my $ssh2 = Net::SSH2->new();
my $auth;
if ( $ssh2->connect('hostname') ) {
$auth = $ssh2->auth_publickey(
'username',
'/home/mike/.ssh/id_rsa.pub',
'/home/mike/.ssh/id_rsa',
'password'
);
}
if ($auth && $ssh2->auth_ok) {
say 'Success';
} else {
say join ', ', $ssh2->error;
}
I have been generating key pairs using ssh-keygen on Ubuntu:
ssh-keygen -t rsa
ssh-copy-id user#server
ssh user#server
The above works correctly - I can SSH to the server.
When I run the Perl code, I get the following error when using a password protected key:
-16, LIBSSH2_ERROR_FILE, Unable to initialize private key from file
If I try with a non-password protected key, it works correctly.
I have the following libraries installed:
Net::SSH2 0.35
libssh2-1 1.2.2-1
libssh2-1-dev 1.2.2-1
ssh 1:5.3p1-3ubuntu6
openssh-server 1:5.3p1-3ubuntu6
openssh-client 1:5.3p1-3ubuntu6
openssl 0.9.8k-7ubuntu8.6
libssl-dev 0.9.8k-7ubuntu8.6
The plot thickens
If I remove libssh2-1 and libssh2-1-dev, I get an error, as expected:
Can't load '/usr/local/lib/perl/5.10.1/auto/Net/SSH2/SSH2.so'
If I then build libssh2 from source, I am unable to reinstall Net::SSH2, as it can't find the development headers. However, if I reinstall libssh2-1 and libssh2-1-dev and then build and install libssh2 from source, it works.
Does that mean that the build of libssh2-1-dev on Ubuntu 10.04 is at fault? If so, how do I install libssh2 from source and correctly install Net::SSH2, without requiring libssh2-1-dev. I presume that the build from source is overwriting or overriding the Ubuntu package.
UPDATE
As noted in Daniel Stenberg's reply, the Ubuntu 10.04 package is now a little out of date (version 1.2.2, compared with the latest stable build at 1.2.8). Installing libssh2 from source 'over the top' of the Ubuntu package solves the problem. However, this feels messy to me. How can I remove the Ubuntu package, install libssh2 from source, and still build Net::SSH2 — how do I tell Net::SSH2 where to find the libssh2 development headers?
UPDATE 2
salva came to the rescue again, and showed how the Net::SSH2 installer can be configured with lib and include directories, so that it may be used with the source install of libssh2. Thanks salva! Note that instead of patching Makefile.PL, it's possible to just override the $lib and $inc variables at the top of Makefile.PL. I wasn't aware of this until I looked at salva's patch.
I have been able to successfully log into a server using a pass-phrase protected key with Net::SSH2 from the the Ubuntu 11.04 libnet-ssh2-perl package.
Anyway, consider using Net::OpenSSH or Net::OpenSSH::Compat::SSH2 instead of Net::SSH2.
Update: Net::OpenSSH::Compat::SSH2 tries to be a replacement for Net::SSH2. There is no need to patch the application in order to try it:
perl -MNet::OpenSSH::Compat=Net::SSH2 yor_app.pl
When you install libssh2 from the source package it will by default install itself in /usr/local, while the default package installs in /usr which probably is why it only finds the "stock" installed version.
Unfortunately it seems your Ubuntu has a fairly old libssh2 version as it has been bugfixed a lot since then.
I recommend using the libssh2-devel mailing list for in-depth libssh2 questions. It's a small but friendly community.
I have created a patch for Net::SSH2 Makefile.PL that allows to set the location of libssh2 libs and headers from the command line.
Here is a capture of the full build process for libssh2 + Net::SSH2 using it:
salva#leon:/tmp/salva$ wget http://www.libssh2.org/download/libssh2-1.2.8.tar.gz
--2011-05-27 11:21:10-- http://www.libssh2.org/download/libssh2-1.2.8.tar.gz
Resolving www.libssh2.org... 80.67.6.50
Connecting to www.libssh2.org|80.67.6.50|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 637707 (623K) [application/x-gzip]
Saving to: `libssh2-1.2.8.tar.gz'
100%[================================================================================================================================================================================================>] 637,707 525K/s in 1.2s
2011-05-27 11:21:14 (525 KB/s) - `libssh2-1.2.8.tar.gz' saved [637707/637707]
salva#leon:/tmp/salva$ tar xzf libssh2-1.2.8.tar.gz
salva#leon:/tmp/salva$ cd libssh2-1.2.8
salva#leon:/tmp/salva/libssh2-1.2.8$ ./configure --prefix=/usr/local/libssh2
checking whether to enable maintainer-specific portions of Makefiles... no
checking for sed... /bin/sed
checking for a BSD-compatible install... /usr/bin/install -c
...
salva#leon:/tmp/salva/libssh2-1.2.8$ make
Making all in src
make[1]: Entering directory `/tmp/salva/libssh2-1.2.8/src'
make all-am
make[2]: Entering directory `/tmp/salva/libssh2-1.2.8/src'
if /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I../include -I../src -g -O2 -MT channel.lo -MD -MP -MF ".deps/channel.Tpo" -c -o channel.lo channel.c; \
then mv -f ".deps/channel.Tpo" ".deps/channel.Plo"; else rm -f ".deps/channel.Tpo"; exit 1; fi
libtool: compile: gcc -DHAVE_CONFIG_H -I../include -I../src -g -O2 -MT channel.lo -MD -MP -MF .deps/channel.Tpo -c channel.c -fPIC -DPIC -o .libs/channel.o
...
salva#leon:/tmp/salva/libssh2-1.2.8$ sudo make install
Making install in src
make[1]: Entering directory `/tmp/salva/libssh2-1.2.8/src'
make[2]: Entering directory `/tmp/salva/libssh2-1.2.8/src'
test -z "/usr/local/libssh2/lib" || mkdir -p -- "/usr/local/libssh2/lib"
/bin/bash ../libtool --mode=install /usr/bin/install -c 'libssh2.la' '/usr/local/libssh2/lib/libssh2.la'
libtool: install: /usr/bin/install -c .libs/libssh2.so.1.0.1 /usr/local/libssh2/lib/libssh2.so.1.0.1
...
salva#leon:/tmp/salva/libssh2-1.2.8$ cd ..
salva#leon:/tmp/salva$ wget http://search.cpan.org/CPAN/authors/id/R/RK/RKITOVER/Net-SSH2-0.35.tar.gz
--2011-05-27 11:22:56-- http://search.cpan.org/CPAN/authors/id/R/RK/RKITOVER/Net-SSH2-0.35.tar.gz
Resolving search.cpan.org... 207.115.101.144
Connecting to search.cpan.org|207.115.101.144|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: http://osl.ugr.es/CPAN/authors/id/R/RK/RKITOVER/Net-SSH2-0.35.tar.gz [following]
--2011-05-27 11:22:59-- http://osl.ugr.es/CPAN/authors/id/R/RK/RKITOVER/Net-SSH2-0.35.tar.gz
Resolving osl.ugr.es... 150.214.21.7
Connecting to osl.ugr.es|150.214.21.7|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 92434 (90K) [application/x-gzip]
Saving to: `Net-SSH2-0.35.tar.gz'
100%[================================================================================================================================================================================================>] 92,434 328K/s in 0.3s
2011-05-27 11:22:59 (328 KB/s) - `Net-SSH2-0.35.tar.gz' saved [92434/92434]
salva#leon:/tmp/salva$ tar xzf Net-SSH2-0.35.tar.gz
salva#leon:/tmp/salva$ cd Net-SSH2-0.35
salva#leon:/tmp/salva/Net-SSH2-0.35$ wget -q --no-check-certificate -O - https://github.com/salva/net-ssh2/commit/3c7261f4584137f4240d204731e20f709f1addb1.patch|patch -p1
patching file Makefile.PL
salva#leon:/tmp/salva/Net-SSH2-0.35$ perl Makefile.PL lib=/usr/local/libssh2/lib/ inc=/usr/local/libssh2/include/
The libssh2 library is required by this module. If you don't have it, you can
download it from http://www.libssh2.org; you may also need OpenSSL, which can be
obtained from http://www.openssl.org.
Debian: sudo aptitude install libssh2-1-dev
OpenSUSE: sudo zypper in libssh2-1 libssh2-devel
Checking if your kit is complete...
Looks good
Writing Makefile for Net::SSH2
salva#leon:/tmp/salva/Net-SSH2-0.35$ make
cp lib/Net/SSH2/File.pm blib/lib/Net/SSH2/File.pm
cp lib/Net/SSH2/PublicKey.pm blib/lib/Net/SSH2/PublicKey.pm
cp lib/Net/SSH2/Dir.pm blib/lib/Net/SSH2/Dir.pm
cp lib/Net/SSH2/SFTP.pm blib/lib/Net/SSH2/SFTP.pm
cp lib/Net/SSH2/Listener.pm blib/lib/Net/SSH2/Listener.pm
cp lib/Net/SSH2/Channel.pm blib/lib/Net/SSH2/Channel.pm
cp lib/Net/SSH2.pm blib/lib/Net/SSH2.pm
AutoSplitting blib/lib/Net/SSH2.pm (blib/lib/auto/Net/SSH2)
/usr/bin/perl "-Iinc" /usr/local/share/perl/5.10.1/ExtUtils/xsubpp -typemap /usr/share/perl/5.10/ExtUtils/typemap -typemap typemap SSH2.xs > SSH2.xsc && mv SSH2.xsc SSH2.c
cc -c /usr/local/libssh2/include/ -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -DVERSION=\"0.35\" -DXS_VERSION=\"0.35\" -fPIC "-I/usr/lib/perl/5.10/CORE" SSH2.c
In file included from SSH2.xs:11:0:
ppport.h:3042:0: warning: "PERL_UNUSED_DECL" redefined
/usr/lib/perl/5.10/CORE/perl.h:330:0: note: this is the location of the previous definition
cc: /usr/local/libssh2/include/: linker input file unused because linking not done
Running Mkbootstrap for Net::SSH2 ()
chmod 644 SSH2.bs
rm -f blib/arch/auto/Net/SSH2/SSH2.so
LD_RUN_PATH="/usr/local/libssh2/lib:/lib/x86_64-linux-gnu" cc -shared -O2 -g -L/usr/local/lib -fstack-protector SSH2.o -o blib/arch/auto/Net/SSH2/SSH2.so \
-L/usr/local/libssh2/lib/ -lssh2 -lz -lssl -lcrypto \
chmod 755 blib/arch/auto/Net/SSH2/SSH2.so
cp SSH2.bs blib/arch/auto/Net/SSH2/SSH2.bs
chmod 644 blib/arch/auto/Net/SSH2/SSH2.bs
Manifying blib/man3/Net::SSH2::File.3pm
Manifying blib/man3/Net::SSH2::Dir.3pm
Manifying blib/man3/Net::SSH2::PublicKey.3pm
Manifying blib/man3/Net::SSH2::SFTP.3pm
Manifying blib/man3/Net::SSH2::Listener.3pm
Manifying blib/man3/Net::SSH2::Channel.3pm
Manifying blib/man3/Net::SSH2.3pm
salva#leon:/tmp/salva/Net-SSH2-0.35$ ldd ./blib/arch/auto/Net/SSH2/SSH2.so
linux-vdso.so.1 => (0x00007fff20abc000)
libssh2.so.1 => /usr/local/libssh2/lib/libssh2.so.1 (0x00007f464d52f000)
libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f464d317000)
libssl.so.0.9.8 => /lib/libssl.so.0.9.8 (0x00007f464d09a000)
libcrypto.so.0.9.8 => /lib/libcrypto.so.0.9.8 (0x00007f464cd0b000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f464c977000)
libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f464c772000)
/lib64/ld-linux-x86-64.so.2 (0x00007f464d97e000)
salva#leon:/tmp/salva/Net-SSH2-0.35$ sudo make install
...