I'm having a scaling issue with an application that uses a PostgreSQL 9 backend. I have one table who's size is about 40 million records and growing and the conditional queries against it have slowed down dramatically.
To help figure out what's going wrong, I've taken a development snapshot of the database and dump the queries with the execution time into the log.
Now for the confusing part, and the gist of the question ....
The run times for my queries in the log are vastly different (an order of magnitude+) that what I get when I run the 'exact' same query in DbVisualizer to get the explain plan.
I say 'exact' but really the difference is, the application is using a prepared statement to which I bind values at runtime while the queries I run in DbVisualizer has those values in place already. The values themselves are exactly as I pulled them from the log.
Could the use of prepared statements make that big of a difference?
The answer is YES. Prepared statements cut both ways.
On the one hand, the query does not have to be re-planned for every execution, saving some overhead. This can make a difference or be hardly noticeable, depending on the complexity of the query.
On the other hand, with uneven data distribution, a one-size-fits-all query plan may be a bad choice. Called with particular values another query plan could be (much) better suited.
Running the query with parameter values in place can lead to a different query plan. More planning overhead, possibly a (much) better query plan.
Also consider unnamed prepared statements like #peufeu provided. Those re-plan the query considering parameters every time - and you still have safe parameter handling.
Similar considerations apply to queries inside PL/pgSQL functions, where queries can be treated as prepared statements internally - unless executed dynamically with EXECUTE. I quote the manual on Executing Dynamic Commands:
The important difference is that EXECUTE will re-plan the command on
each execution, generating a plan that is specific to the current
parameter values; whereas PL/pgSQL may otherwise create a generic plan
and cache it for re-use. In situations where the best plan depends
strongly on the parameter values, it can be helpful to use EXECUTE to
positively ensure that a generic plan is not selected.
Apart from that, general guidelines for performance optimization apply.
Erwin nails it, but let me add that the extended query protocol allows you to use more flavors of prepared statements. Besides avoiding re-parsing and re-planning, one big advantage of prepared statements is to send parameter values separately, which avoids escaping and parsing overhead, not to mention the opportunity for SQL injections and bugs if you don't use an API that handles parameters in a manner you can't forget to escape them.
http://www.postgresql.org/docs/9.1/static/protocol-flow.html
Query planning for named prepared-statement objects occurs when the
Parse message is processed. If a query will be repeatedly executed
with different parameters, it might be beneficial to send a single
Parse message containing a parameterized query, followed by multiple
Bind and Execute messages. This will avoid replanning the query on
each execution.
The unnamed prepared statement is likewise planned during Parse
processing if the Parse message defines no parameters. But if there
are parameters, query planning occurs every time Bind parameters are
supplied. This allows the planner to make use of the actual values of
the parameters provided by each Bind message, rather than use generic
estimates.
So, if your DB interface supports it, you can use unnamed prepared statements. It's a bit of a middle ground between a query and a usual prepared statement.
If you use PHP with PDO, please note that PDO's prepared statement implementation is rather useless for postgres, since it uses named prepared statements, but re-prepares every time you call prepare(), no plan caching takes place. So you get the worst of both : many roundtrips and plan without parameters. I've seen it be 1000x slower than pg_query() and pg_query_params() on specific queries where the postgres optimizer really needs to know the parameters to produce the optimal plan. pg_query uses raw queries, pg_query_params uses unnamed prepared statements. Usually one is faster than the other, that depends on the size of parameter data.
Related
I'm pretty new to PostgreSQL so I guess i'm missing some basic information, information that I didn't quite find while googling, guess I didn't really know the right keywords, hopefully here I'll get the missing information :)
I'm using PostgreSQL 11.4.
I've encountered many issues when I create a function that returns a query result as a table, and it executes it about 50 times slower then running the actual query, sometimes even more then that.
I understand that IMMUTABLE can be used when there is no table scans, just when I manipulate and return data based on the function parameters and STABLE when if the query with same parameters do a table scan and always returns the same results.
so the format of my function creation is this:
CREATE FUNCTION fnc_name(columns...)
RETURNS TABLE ( columns..) STABLE AS $func$
BEGIN
select ...
END $func$ LANGUAGE pgplsql;
I can't show the query here since it's work related, but still... there is something that I didn't quite understand about creating functions why is it so slow ? I need to fully understand this issue cause I need to create many more functions and it seems right now that I need to run the actual query to get proper performance instead of using functions and I still don't really have a clue as to why!
any information regarding this issue would be greatly appreciated.
All depends on usage of this function, and size of returned relation.
First I have to say - don't write these functions. It is known antipattern. I'll try to explain why. Use views instead.
Result of table functions written in higher PL languages like Perl, Python or PLpgSQL is materialized. When table is small (to work_mem) it is stored in memory. Bigger tables are stored in temp file. It can have significant overhead.
Function is a black box for optimizer - is not possible to push down predicates, there are not correct statistics, there is not possible to play with form of joins or order of joins. So some not trivial queries can be slower (little bit or significantly) due impossible optimizations.
There is a exception from these rules - simple SQL functions. SQL functions (functions with single SQL statement) can be inlined (when some prerequisites are true). Due inlining the body of function is merged to body of outer SQL query, and the result is same like you will write subquery directly. So result is not materialized and it is not a barrier for optimization.
There is a basic rule - use functions only when you cannot to calculate some data by SQL. Don't try to hide SQL or encapsulate SQL (elsewhere - for simplification some complex queries use views not functions). Same rules are valid for all SQL databases (Oracle, DB2, MSSQL). Postgres is not a exception.
This note is not against stored procedures (functions). It is great technology. But it requires specific style of programming. Wrapping queries into functions (when there is not any other) is bad.
I am running some benchmarks tests on a lot of queries. I have a set of queries and they will be run multiple times after each other. I know that PostgreSQL caches query plans so this is important to consider but as far as I know this does not always happen.
So I have two approaches. I am considering to either (a) force the query plan to be generated each time I run a query or either (b) to 'warm up' a bit so that a plan is cached and it is reused each time. How can I perform either or what precautions can I take to ensure that one or the other is happening?
It would be great if I could monitor plans in the cache but I am not sure if it is possible.
UPDATE: My queries are complex SELECTs to retrieve data, no DELETEs/INSERTs etc. Does this mean I should not give so much respect to the query planner in benchmarks?
PostgreSQL only caches query plans if
you use prepared statements
the statement is executed inside a PL/pgSQL function
So if you want to benchmark how much faster your queries become if you avoid the overhead of planning, you should create a prepared statement and execute it al least six times (because the first five runs will always generate a custom plan).
If your queries are complex, odds are that you might even lose if you cache query plans, particularly if the runtime of the queries is long. In such a case, it is usually better to spend more effort on planning each query. The biggest win with prepared statements is when the execution time of the queries is low.
From PostgreSQL 9.6 Release Notes:
Only strictly read-only queries where the driving table is accessed via a sequential scan can be parallelized.
My question is: If a CTE (WITH clause) contains only read operations, but its results is used to feed a writing operation, like an insert or update, is it also disallowed to parallelize sequential scans?
I mean, as CTE is much like a temporary table which only exists for currently executing query, can I suppose that its inner query can take advantage of the brand new parallel seq-scan of PostgreSQL 9.6? Or, otherwise, is it treated as a using subquery and cannot perform parallel scan?
For example, consider this query:
WITH foobarbaz AS (
SELECT foo FROM bar
WHERE some_expensive_function(baz)
)
DELETE FROM bar
USING foobarbaz
WHERE bar.foo = foobarbaz.foo
;
Is that foobarbaz calculation expected to be able to be parallelized or is it disallowed because of the delete sentence?
If it isn't allowed, I thought that can replace the CTE by a CREATE TEMPORARY TABLE statement. But I think I will fall into the same issue as CREATE TABLE is a write operation. Am I wrong?
Lastly, a last chance I could try is to perform it as a pure read operation and use its result as input for insert and / or update operations. Outside of a transaction it should work. But the question is: If the read operation and the insert/update are between a begin and commit sentences, it not will be allowed anyway? I understand they are two completely different operations, but in the same transaction and Postgres.
To be clear, my concern is that I have an awful mass of hard-to-read and hard-to-redesign SQL queries that involves multiple sequential scans with low-performance function calls and which performs complex changes over two tables. The whole process runs in a single transaction because, if not, the mess in case of failure would be totally unrecoverable.
My hope is to able to parallelize some sequential scans to take advantage of the 8 cpu cores of the machine to be able to complete the process sooner.
Please, don't answer that I need to fully redesign that mess: I know and I'm working on it. But it is a great project and we need to continue working meantime.
Anyway, any suggestion will be thankful.
EDIT:
I add a brief report of what I could discover up to now:
As #a_horse_with_no_name says in his comment (thanks), CTE and the rest of the query is a single DML statement and, if it has a write operation, even outside of the CTE, then the CTE cannot be parallelized (I also tested it).
Also I found this wiki page with more concise information about parallel scans than what I found in the release notes link.
An interesting point I could check thanks to that wiki page is that I need to declare the involved functions as parallel safe. I did it and worked (in a test without writings).
Another interesting point is what #a_horse_with_no_name says in his second comment: Using DbLink to perform a pure read-only query. But, investigating a bit about that, I seen that postgres_fdw, which is explicitly mentioned in the wiki as non supporting parallel scans, provides roughly the same functionality using a more modern and standards-compliant infrastructure.
And, on the other hand, even if it would worked, I were end up getting data from outside the transaction which, in some cases would be acceptable for me but, I think, not as good idea as general solution.
Finally, I checked that is possible to perform a parallel-scan in a read-only query inside a transaction, even if it later performs write operations (no exception is triggered and I could commit).
...in summary, I think that my best bet (if not the only one) would be to refactor the script in a way that it reads the data to memory before to later perform the write operations in the same transaction.
It will increase I/O overhead but, attending the latencies I manage it will be even better.
I have this process that has to make a series of queries, using pl/pgsql:
--process:
SELECT function1();
SELECT function2();
SELECT function3();
SELECT function4();
To be able to execute everything in one call, I created a process function as such:
CREATE OR REPLACE FUNCTION process()
RETURNS text AS
$BODY$
BEGIN
PERFORM function1();
PERFORM function2();
PERFORM function3();
PERFORM function4();
RETURN 'process ended';
END;
$BODY$
LANGUAGE plpgsql
The problem is, when I sum the time that each function takes by itself, the total is 200 seconds, while the time that the function process() takes is more than one hour!
Maybe it's a memory issue, but I don't know which configuration on postgresql.conf should I change.
The DB is running on PostgreSQL 9.4, in a Debian 8.
You commented that the 4 functions have to run consecutively. So it's safe to assume that each function works with data from tables that have been modified by the previous function. That's my prime suspect.
Any Postgres function runs inside the transaction of the outer context. So all functions share the same transaction context if packed into another function. Each can see effects on data from previous functions, obviously. (Even though effects are still invisible to other concurrent transactions.) But statistics are not updated immediately.
Query plans are based on statistics on involved objects. PL/pgSQL does not plan statements until they are actually executed, that would work in your favor. Per documentation:
As each expression and SQL command is first executed in the function,
the PL/pgSQL interpreter parses and analyzes the command to create a
prepared statement, using the SPI manager's SPI_prepare function.
PL/pgSQL can cache query plans, but only within the same session and (in pg 9.2+ at least) only after a couple of executions have shown the same query plan to work best repeatedly. If you suspect this going wrong for you, you can work around it with dynamic SQL which forces a new plan every time:
EXECUTE 'SELECT function1()';
However, the most likely candidate I see is invalidated statistics that lead to inferior query plans. SELECT / PERFORM statements (same thing) inside the function are run in quick succession, there is no chance for autovacuum to kick in and update statistics between one function and the next. If one function substantially alters data in a table the next function is working with, the next function might base its query plan on outdated information. Typical example: A table with a few rows is filled with many thousands of rows, but the next plan still thinks a sequential scan is fastest for the "small" table. You state:
when I sum the time that each function takes by itself, the total is
200 seconds, while the time that the function process() takes is more
than one hour!
What exactly does "by itself" mean? Did you run them in a single transaction or in individual transactions? Maybe even with some time in between? That would allow autovacuum to update statistics (it's typically rather quick) and possibly lead to completely different query plans based on the changed statistic.
You can inspect query plans inside plpgsql functions with auto-explain
Postgres query plan of a UDF invocation written in pgpsql
If you can identify such an issue, you can force ANALYZE in between statements. Being at it, for just a couple of SELECT / PERFORM statements you might as well use a simpler SQL function and avoid plan caching altogether (but see below!):
CREATE OR REPLACE FUNCTION process()
RETURNS text
LANGUAGE sql AS
$func$
SELECT function1();
ANALYZE some_substantially_affected_table;
SELECT function2();
SELECT function3();
ANALYZE some_other_table;
SELECT function4();
SELECT 'process ended'; -- only last result is returned
$func$;
Also, as long as we don't see the actual code of your called functions, there can be any number of other hidden effects.
Example: you could SET LOCAL ... some configuration parameter to improve the performance of your function1(). If called in separate transactions that won't affect the rest. The effect only last till the end of the transaction. But if called in a single transaction it affects the rest, too ...
Basics:
Difference between language sql and language plpgsql in PostgreSQL functions
PostgreSQL Stored Procedure Performance
Plus: transactions accumulate locks, which binds an increasing amount of resources and may cause increasing friction with concurrent processes. All locks are released at the end of a transaction. It's better to run big functions in separate transactions if at all possible, not wrapped in a single function (and thus transaction). That last item is related to what #klin and IMSoP already covered.
Warning for future readers (2015-05-30).
The technique described in the question is one of the smartest ways to effectively block the server.
In some corporations the use of this technology can meet with the reward in the form of immediate termination of the employment contract.
Attempts to improve this method are useless. It is simple, beautiful and sufficiently effective.
In RDMS the support of transactions is very expensive. When executing a transaction the server must create and store information on all changes made to the database to make these changes visible in environment (other concurrent processes) in case of a successful completion, and in case of failure, to restore the state before the transaction as soon as possible. Therefore the natural principle affecting server performance is to include in one transaction a minimum number of database operations, ie. only as much as is necessary.
A Postgres function is executed in one transaction. Placing in it many operations that could be run independently is a serious violation of the above rule.
The answer is simple: just do not do it. A function execution is not a mere execution of a script.
In the procedural languages used to write applications there are many other possibilities to simplify the code by using functions or scripts. There is also the possibility to run scripts with shell.
The use a Postgres function for this purpose would make sense if there were a possibility of using transactions within the function. At present, such a possibility does not exist, although discussions on this issue have already long history (you can read about it e.g. in postgres mailing lists).
I'm looking at using some JavaScript in a MongoDb query. I have a couple of choices:
db.system.js.save the function in the db then execute it
db.myCollection.find with a $where clause and send the JS each time
exec_js in MongoEngine (which I imagine uses one of the above)
I plan to use the JavaScript in a regularly used query that's executed as part of a request to a site or API (i.e. not a batch administrative jobs) so it's important that the query executes with reasonable speed.
I'm looking at a 30ish line function.
Is the Javascript interpreted fresh each time? Will the performance be ok? Is it a sensible basis upon which to build queries?
Is the Javascript interpreted fresh each time?
Pretty much. MongoDB only has one "javascript instance" per running instance of MongoDB. You'll notice this if you try to run two different Map/Reduces at the same time.
Will the performance be ok?
Obviously, there are different definitions of "OK" here. The $where clause can not use indexes. You can combine that clause with another indexed query. In either case each object will need to be pushed from BSON over to the Javascript run-time and then acted on inside the run-time.
The process is definitely not what you would call "performant". Of course, by that measure Map/Reduce is also not very performant and people use that on production systems.
Is it a sensible basis upon which to build queries?
The real barrier here isn't the number of lines in the code, it's the number of possible documents this code will interpret. Even though it's "server-side" javascript, it's still a bunch of work that the server has to do. (in one thread, in an interpreted environment)
If you can test it and scope it correctly, it may well work out. Just don't expect miracles.
What is your point here? Write a JS script and call it regularly through cron. What should be the problem with that?