should mongodb nodes in replicaset need to be time synchronized? - mongodb

"MongoDB in Action" book says:
Imagine you issue a write to the primary node of a replica set. What happens next? First, the write is recorded and then added to the
primary’s oplog. Meanwhile, all sec- ondaries have their own oplogs
that replicate the primary’s oplog. So when a given secondary node is
ready to update itself, it does three things. First, it looks at the
time- stamp of the latest entry in its own oplog. Next, it queries the
primary’s oplog for all entries greater than that timestamp. Finally,
it adds each of those entries to its own oplog and applies the entries
to itself
So this means nodes must be time synchronized? because timestamps must be equal on all nodes.

In general, yes, it is a very good idea to have your hosts synchronized (NTP is the usual solution). In fact I have seen far worse issues caused than an out of sync oplog - different times on database hosts in a cluster should be considered a must.
This is actually mentioned on the Production Notes page in the docs:
http://www.mongodb.org/display/DOCS/Production+Notes#ProductionNotes-Linux
See the note about minimizing clock skew.

Based on the writing you have provided, nodes are basing everything on the timestamp of the most recently received write, not their own clocks. However, the problem happens when the master is stepped down and a secondary becomes the primary. If the time is skewed greatly, it may cause replication to be delayed or other issues.

Related

MongoDB oplog contains many Noops

I am trying to improve the oplog of my MongoDB server, because for now it's covering less hours, than I would like (I am not planning to increase oplog file size for now). What I found that there are many noops records in the oplog collection - { "op": "n" } + the whole document on "o". And they could take about ~20%-30% of the physical oplog size.
How could I find the reason for that, because it seems to be not ok ?
We are using MongoDB 3.6 + NodeJS 10 + Mongoose
p.s. it appears for many different collection and use cases, so it's hard to understand what is a application logic behind all these items.
No-op writes are expected in a MongoDB 3.4+ replica set in order to support the Max Staleness specification that helps applications avoid reading from stale secondaries and provides a more accurate measure of replication lag. These no-op writes only happen when the primary is idle. The idle write interval is not currently configurable (as at MongoDB 4.2).
The Max Staleness specification includes an example scenario and more detailed rationale for why the Primary must write periodic no-ops as well as other design decisions.
A relevant excerpt from the design rationale:
An idle primary must execute a no-op every 10 seconds (idleWritePeriodMS) to keep secondaries' lastWriteDate values close to the primary's clock. The no-op also keeps opTimes close to the primary's, which helps mongos choose an up-to-date secondary to read from in a CSRS.
Monitoring software like MongoDB Cloud Manager that charts replication lag will also benefit when spurious lag spikes are solved.

Can someone give me detailed technical reasons why writing to a secondary in MongoDB replica set is not allowed

I know we can't write to a secondary in MongoDB. But I can't find any technical reason why. In my case, I don't really care if there is a slight delay but write to a secondary might be faster. Please provide some reference if you can. Thanks!!
The reason why you can not write to a secondary is the way replication works:
Secondaries connect to a special collection on the primary, called oplog. This oplog contains operations which were run through the query optimizer. Basically, the oplog is a capped collection, and the secondaries use a tailable cursor to access it's entries and processes it from the oldest to the newest.
When a election takes place because the primary goes down / steps down, the secondary with the most recent oplog entry is elected primary. The secondaries connect to the new primary, query for the oplog entries they haven't processed yet and the cluster is in sync.
This procedure is pretty straight forward. Now imagine one could write to a secondary. All nodes in the cluster would have to have a tailable cursor on all other nodes of the cluster, and maintaining a consistent state in case of one machine failing becomes a very complicated and in case of a failure even race condition dependent thing. Effectively, there could be no guarantee even for eventual consistency any more. It would be a more or less a gamble.
That being said: A replica set is not for load balancing. A replica sets purpose is to enhance the availability and durability of the data. Because reading from a secondary is a non-risky thing, MongoDB made it possible, according to their dogma of offering the maximum of possible features without compromising scalability (which would be severely hampered if one could write to secondaries).
But MongoDB does provide a load balancing feature: sharding. Choosing the right shard key, you can distribute read and write load over (almost) as many shards as you want. Not to mention that you can provide a lot more of the precious RAM for a reasonable price when sharding.
There is a one liner answer:
Multi-master replication is a hairball.
If you was allowed to write to secondaries MongoDB would have to use milti-master replication to ge this working: http://en.wikipedia.org/wiki/Multi-master_replication where essentially evey node copies to each other the OPs (operations) they have received and somehow do it without losing data.
This form of replication has many obsticles to overcome.
One would be throughput; remember that OPs need to transfer across the entire network so it is possible you might actually lose throughput while adding consistentcy problems. So getting better throughput would be a problem. It is much having a secondary, taking all of the primaries OPs and then its own for replication outbound and then asking it to do yet another job.
Adding consistentcy over a distributed set like this would also be hazardous, one main question that bugs MongoDB when asking if a member is down or is: "Is it really down or just unavailable?". It is almost impossible to ensure true consistentcy in a distributed set like this, at the very least tricky.
Those are just two problems immediately.
Essentially, to sum up, MongoDB does not yet possess mlti-master replication. It could in the future but I would not be jumping for joy if it does, I will most likely ignore such a feature, normal replication and sharding in both ACID and non-ACID databases causes enough blood pressure.

Why is MongoDB supposed to Consistent & Partition tolerant but not Available [duplicate]

Everywhere I look, I see that MongoDB is CP.
But when I dig in I see it is eventually consistent.
Is it CP when you use safe=true? If so, does that mean that when I write with safe=true, all replicas will be updated before getting the result?
MongoDB is strongly consistent by default - if you do a write and then do a read, assuming the write was successful you will always be able to read the result of the write you just read. This is because MongoDB is a single-master system and all reads go to the primary by default. If you optionally enable reading from the secondaries then MongoDB becomes eventually consistent where it's possible to read out-of-date results.
MongoDB also gets high-availability through automatic failover in replica sets: http://www.mongodb.org/display/DOCS/Replica+Sets
I agree with Luccas post. You can't just say that MongoDB is CP/AP/CA, because it actually is a trade-off between C, A and P, depending on both database/driver configuration and type of disaster: here's a visual recap, and below a more detailed explanation.
Scenario
Main Focus
Description
No partition
CA
The system is available and provides strong consistency
partition, majority connected
AP
Not synchronized writes from the old primary are ignored
partition, majority not connected
CP
only read access is provided to avoid separated and inconsistent systems
Consistency:
MongoDB is strongly consistent when you use a single connection or the correct Write/Read Concern Level (Which will cost you execution speed). As soon as you don't meet those conditions (especially when you are reading from a secondary-replica) MongoDB becomes Eventually Consistent.
Availability:
MongoDB gets high availability through Replica-Sets. As soon as the primary goes down or gets unavailable else, then the secondaries will determine a new primary to become available again. There is an disadvantage to this: Every write that was performed by the old primary, but not synchronized to the secondaries will be rolled back and saved to a rollback-file, as soon as it reconnects to the set(the old primary is a secondary now). So in this case some consistency is sacrificed for the sake of availability.
Partition Tolerance:
Through the use of said Replica-Sets MongoDB also achieves the partition tolerance: As long as more than half of the servers of a Replica-Set is connected to each other, a new primary can be chosen. Why? To ensure two separated networks can not both choose a new primary. When not enough secondaries are connected to each other you can still read from them (but consistency is not ensured), but not write. The set is practically unavailable for the sake of consistency.
As a brilliant new article showed up and also some awesome experiments by Kyle in this field, you should be careful when labeling MongoDB, and other databases, as C or A.
Of course CAP helps to track down without much words what the database prevails about it, but people often forget that C in CAP means atomic consistency (linearizability), for example. And this caused me lots of pain to understand when trying to classify. So, besides MongoDB give strong consistency, that doesn't mean that is C. In this way, if one make this classifications, I recommend to also give more depth in how it actually works to not leave doubts.
Yes, it is CP when using safe=true. This simply means, the data made it to the masters disk.
If you want to make sure it also arrived on some replica, look into the 'w=N' parameter where N is the number of replicas the data has to be saved on.
see this and this for more information.
MongoDB selects Consistency over Availability whenever there is a Partition. What it means is that when there's a partition(P) it chooses Consistency(C) over Availability(A).
To understand this, Let's understand how MongoDB does replica set works. A Replica Set has a single Primary node. The only "safe" way to commit data is to write to that node and then wait for that data to commit to a majority of nodes in the set. (you will see that flag for w=majority when sending writes)
Partition can occur in two scenarios as follows :
When Primary node goes down: system becomes unavailable until a new
primary is selected.
When Primary node looses connection from too many
Secondary nodes: system becomes unavailable. Other secondaries will try to
elect a new Primary and current primary will step down.
Basically, whenever a partition happens and MongoDB needs to decide what to do, it will choose Consistency over Availability. It will stop accepting writes to the system until it believes that it can safely complete those writes.
Mongodb never allows write to secondary. It allows optional reads from secondary but not writes. So if your primary goes down, you can't write till a secondary becomes primary again. That is how, you sacrifice High Availability in CAP theorem. By keeping your reads only from primary you can have strong consistency.
I'm not sure about P for Mongo. Imagine situation:
Your replica gets split into two partitions.
Writes continue to both sides as new masters were elected
Partition is resolved - all servers are now connected again
What happens is that new master is elected - the one that has highest oplog, but the data from the other master gets reverted to the common state before partition and it is dumped to a file for manual recovery
all secondaries catch up with the new master
The problem here is that the dump file size is limited and if you had a partition for a long time you can loose your data forever.
You can say that it's unlikely to happen - yes, unless in the cloud where it is more common than one may think.
This example is why I would be very careful before assigning any letter to any database. There's so many scenarios and implementations are not perfect.
If anyone knows if this scenario has been addressed in later releases of Mongo please comment! (I haven't been following everything that was happening for some time..)
Mongodb gives up availability. When we talk about availability in the context of the CAP theorem, it is about avoiding single points of failure that can go down. In mongodb. there is a primary router host. and if that goes down,there is gonna be some downtime in the time that it takes for it to elect a new replacement server to take its place. In practical, that is gonna happen very qucikly. we do have a couple of hot standbys sitting there ready to go. So as soon as the system detects that primary routing host went down, it is gonna switch over to a new one pretty much right away. Technically speaking it is still single point of failure. There is still a chance of downtime when that happens.
There is a config server, that is the primary and we have an app server, that is primary at any given time. even though we have multiple backups, there is gonna be a brief period of downtime if any of those servers go down. the system has to first detect that there was an outage and then remaining servers need to reelect a new primary host to take its place. that might take a few seconds and this is enough to say that mongodb is trading off the availability

Cannot read from last remaining node in replica set

I have a 3 node MongoDB (2.6.3) replica set and am testing various failure scenarios.
It was my understanding that if a majority of the replica nodes are not available then the replica set becomes read only. But what I am experiencing is if I shut down my 2 secondary nodes, the last remaining node (which was previously primary) becomes a secondary and I cannot even read from it.
From the docs:
Users may configure read preference on a per-connection basis to
prefer that the read operations return on the secondary members. If
clients configure the read preference to permit secondary reads, read
operations can return from secondary members that have not replicated
more recent updates or operations. When reading from a secondary, a
query may return data that reflects a previous state.
It sounds like I can configure my client to allow reads from secondaries, but since it was the primary node that I left up, it should be up to date with all of the data. Does MongoDB make the last node secondary even if it is fully caught up with data?
As you've noted, once you've shut down the two secondaries, your primary steps down and becomes a secondary (it's a normal scenario once a primary looses connection to the majority of members).
The default read preference of a replica set is to read from primary, but since your former primary is not even primary anymore, as you have encountered , "I cannot even read from it."
You can change read-preference on a driver/database/collection and even operation basis.
since it was the primary node that I left up, it should be up to date with all of the data. Does MongoDB make the last node secondary even if it is fully caught up with data?
As said, the primary becomes secondary as it steps down, nothing to do with the fact that it's up to date or not. It wouldn't read even because of the default read preference, if you will change your driver preference to secondary , nearest or so, you'll be able to continue reading even if a single node (former primary) remains.

Where does mongodb stand in the CAP theorem?

Everywhere I look, I see that MongoDB is CP.
But when I dig in I see it is eventually consistent.
Is it CP when you use safe=true? If so, does that mean that when I write with safe=true, all replicas will be updated before getting the result?
MongoDB is strongly consistent by default - if you do a write and then do a read, assuming the write was successful you will always be able to read the result of the write you just read. This is because MongoDB is a single-master system and all reads go to the primary by default. If you optionally enable reading from the secondaries then MongoDB becomes eventually consistent where it's possible to read out-of-date results.
MongoDB also gets high-availability through automatic failover in replica sets: http://www.mongodb.org/display/DOCS/Replica+Sets
I agree with Luccas post. You can't just say that MongoDB is CP/AP/CA, because it actually is a trade-off between C, A and P, depending on both database/driver configuration and type of disaster: here's a visual recap, and below a more detailed explanation.
Scenario
Main Focus
Description
No partition
CA
The system is available and provides strong consistency
partition, majority connected
AP
Not synchronized writes from the old primary are ignored
partition, majority not connected
CP
only read access is provided to avoid separated and inconsistent systems
Consistency:
MongoDB is strongly consistent when you use a single connection or the correct Write/Read Concern Level (Which will cost you execution speed). As soon as you don't meet those conditions (especially when you are reading from a secondary-replica) MongoDB becomes Eventually Consistent.
Availability:
MongoDB gets high availability through Replica-Sets. As soon as the primary goes down or gets unavailable else, then the secondaries will determine a new primary to become available again. There is an disadvantage to this: Every write that was performed by the old primary, but not synchronized to the secondaries will be rolled back and saved to a rollback-file, as soon as it reconnects to the set(the old primary is a secondary now). So in this case some consistency is sacrificed for the sake of availability.
Partition Tolerance:
Through the use of said Replica-Sets MongoDB also achieves the partition tolerance: As long as more than half of the servers of a Replica-Set is connected to each other, a new primary can be chosen. Why? To ensure two separated networks can not both choose a new primary. When not enough secondaries are connected to each other you can still read from them (but consistency is not ensured), but not write. The set is practically unavailable for the sake of consistency.
As a brilliant new article showed up and also some awesome experiments by Kyle in this field, you should be careful when labeling MongoDB, and other databases, as C or A.
Of course CAP helps to track down without much words what the database prevails about it, but people often forget that C in CAP means atomic consistency (linearizability), for example. And this caused me lots of pain to understand when trying to classify. So, besides MongoDB give strong consistency, that doesn't mean that is C. In this way, if one make this classifications, I recommend to also give more depth in how it actually works to not leave doubts.
Yes, it is CP when using safe=true. This simply means, the data made it to the masters disk.
If you want to make sure it also arrived on some replica, look into the 'w=N' parameter where N is the number of replicas the data has to be saved on.
see this and this for more information.
MongoDB selects Consistency over Availability whenever there is a Partition. What it means is that when there's a partition(P) it chooses Consistency(C) over Availability(A).
To understand this, Let's understand how MongoDB does replica set works. A Replica Set has a single Primary node. The only "safe" way to commit data is to write to that node and then wait for that data to commit to a majority of nodes in the set. (you will see that flag for w=majority when sending writes)
Partition can occur in two scenarios as follows :
When Primary node goes down: system becomes unavailable until a new
primary is selected.
When Primary node looses connection from too many
Secondary nodes: system becomes unavailable. Other secondaries will try to
elect a new Primary and current primary will step down.
Basically, whenever a partition happens and MongoDB needs to decide what to do, it will choose Consistency over Availability. It will stop accepting writes to the system until it believes that it can safely complete those writes.
Mongodb never allows write to secondary. It allows optional reads from secondary but not writes. So if your primary goes down, you can't write till a secondary becomes primary again. That is how, you sacrifice High Availability in CAP theorem. By keeping your reads only from primary you can have strong consistency.
I'm not sure about P for Mongo. Imagine situation:
Your replica gets split into two partitions.
Writes continue to both sides as new masters were elected
Partition is resolved - all servers are now connected again
What happens is that new master is elected - the one that has highest oplog, but the data from the other master gets reverted to the common state before partition and it is dumped to a file for manual recovery
all secondaries catch up with the new master
The problem here is that the dump file size is limited and if you had a partition for a long time you can loose your data forever.
You can say that it's unlikely to happen - yes, unless in the cloud where it is more common than one may think.
This example is why I would be very careful before assigning any letter to any database. There's so many scenarios and implementations are not perfect.
If anyone knows if this scenario has been addressed in later releases of Mongo please comment! (I haven't been following everything that was happening for some time..)
Mongodb gives up availability. When we talk about availability in the context of the CAP theorem, it is about avoiding single points of failure that can go down. In mongodb. there is a primary router host. and if that goes down,there is gonna be some downtime in the time that it takes for it to elect a new replacement server to take its place. In practical, that is gonna happen very qucikly. we do have a couple of hot standbys sitting there ready to go. So as soon as the system detects that primary routing host went down, it is gonna switch over to a new one pretty much right away. Technically speaking it is still single point of failure. There is still a chance of downtime when that happens.
There is a config server, that is the primary and we have an app server, that is primary at any given time. even though we have multiple backups, there is gonna be a brief period of downtime if any of those servers go down. the system has to first detect that there was an outage and then remaining servers need to reelect a new primary host to take its place. that might take a few seconds and this is enough to say that mongodb is trading off the availability