Perl Cryptology: Encrypting/Decrypting ASCII chracters with pack and unpack functions - perl

Question

I need help figuring out how these two subroutines work and what values or data structures they return. Here's a minimal representation of the code:
#!/usr/bin/perl
use strict; use warnings;
# an array of ASCII encrypted characters
my #quality = ("C~#p)eOA`/>*", "DCCec)ds~~", "*^&*"); # for instance
# input the quality
# the '#' character in front deferences the subroutine's returned array ref
my #q = #{unpack_qual_to_phred(#quality)};
print pack_phred_to_qual(\#q) . "\n";
sub unpack_qual_to_phred{
my ($qual)=#_;
my $upack_code='c' . length($qual);
my #q=unpack("$upack_code",$qual);
for(my $i=0;$i<#q;$i++){
$q[$i]-=64;
}
return(\#q);
}
sub pack_phred_to_qual{
my ($q_ref)=#_;
#q=#{$q_ref};
for(my $i=0;$i<#q;$i++){
$q[$i]+=64;
}
my $pack_code='c' . int(#q);
my $qual=pack("$pack_code",#q);
return ($qual);
}
1;
From my understanding, the unpack_qual_to_phread() subroutine apparently decrypts the ASCII character elements stored in #quality. The subroutine reads in an array containing elements of ASCII characters. Each element of the array is processed and apparently decrypted. The subroutine then returns an array ref containing elements of the decrypted array. I understand this much however I'm not really familiar with the Perl functions pack and unpack. Also I was unable to find any good examples of them online.
I think the pack_phred_to_qual subroutine converts the quality array ref back into ASCII characters and prints them.
thanks. any help or suggestions are greatly appreciated. Also if someone could provide a simple example of how Perl's pack and unpack functions work that would help too.

Answer 1

Calculating the length is needless. Those functions can be simplified to
sub unpack_qual_to_phred { [ map $_ - 64, unpack 'c*', $_[0] ] }
sub pack_phred_to_qual { pack 'c*', map $_ + 64, #{ $_[0] } }
In encryption terms, it's a crazy simple substitution cypher. It simply subtracts 64 from the character number of each character. It could have been written as
sub encrypt { map $_ - 64, #_ }
sub decrypt { map $_ + 64, #_ }
The pack/unpack doesn't factor in the encryption/decryption at all; it's just a way of iterating over each byte.

Answer 2

It is fairly simple, as packs go. Is is calling unpack("c12", "C~#p)eOA/>*)` which takes each letter in turn and finds the ascii value for that letter, and then subtracts 64 from the value (well, subtracting 64 is a post-processing step, nothing to do with pack). So letter "C" is ascii 67 and 67-64 is 3. Thus the first value out of that function is a 3. Next is "~" which is ascii 126. 126-64 is 62. Next is # which is ascii 35, and 35-64 is -29, etc.
The complete set of numbers being generated from your script is:
3,62,-29,48,-23,37,15,1,32,-17,-2,-22
The "encryption" step simply reverses this process. Adds 64 and then converts to a char.

Answer 3

This is not a full answer to your question, but did you read perlpacktut? Or the pack/unpack docs on perldoc? Those will probably go a long way to helping you understand.
EDIT:
Here's a simple way to think of it: say you have a 4-byte number stored in memory, 1234. If that's in a perl scalar, $num, then
pack('s*', $num)
would return
π♦
or whatever the actual internal storage value of "1234" is. So pack() treated the scalar value as a string, and turned it into the actual binary representation of the number (you see "pi-diamond" printed out, because that's the ASCII representation of that number). Conversely,
unpack('s*', "π♦")
would return the string "1234".
The unpack() part of your unpack_qual_to_phred() subroutine could be simplified to:
my #q = unpack("c12", "C~#p)e0A`/>*");
which would return a list of ASCII character pairs, each pair corresponding to a byte in the second argument.