checking mongo database for data - mongodb

I'm playing around with this tutorial that uses Sinatra, backbone.js, and mongodb for the database. It's my first time using mongo. As far as I understand it the app uses both local storage and a database. it has these routes for the database. For example, it has these routes
get '/api/:thing' do
DB.collection(params[:thing]).find.to_a.map{|t| from_bson_id(t)}.to_json
end
get '/api/:thing/:id' do
from_bson_id(DB.collection(params[:thing]).find_one(to_bson_id(params[:id]))).to_json
end
post '/api/:thing' do
oid = DB.collection(params[:thing]).insert(JSON.parse(request.body.read.to_s))
"{\"_id\": \"#{oid.to_s}\"}"
end
After turning the server off and then on, I could see in the server getting data from the database routes
127.0.0.1 - - [17/Sep/2012 08:21:58] "GET /api/todos HTTP/1.1" 200 430 0.0033
My question is, how can I check from within the mongo shell whether the data's in the database?
I started the mongo shell
./bin/mongo
I selected the database 'use mydb'
and then looking at the docs (http://www.mongodb.org/display/DOCS/Tutorial) I tried commands such as
> var cursor = db.things.find();
> while (cursor.hasNext()) printjson(cursor.next());
but they didn't return anything.

You don't really have to create a cursor just to read some data.
% mongo
MongoDB shell version: 2.2.0
connecting to: test
> use mydb
switched to db mydb
> show collections
system.indexes
things
> db.things.find()
{ "_id" : ObjectId("50569a52c0ba23837b5dd811"), "name" : "TV set" }
{ "_id" : ObjectId("50569a5bc0ba23837b5dd812"), "name" : "car" }
If db.things.find() doesn't print anything, then there's no data in that collection (or you mistyped its name, or are using the wrong database).

Related

How to write log file for individual collection in mongodb database?

I have a peculiar question that I haven't been able to find an answer to yet. I have a database and a collection in it. Let's call them "test database" and "test collection". There are a range of users from root to a user with read-only access to the "test database". I need to output a special log file for operations that are carried out in a "test database".
I have already found "mongo.log" in the path "/var/log/mongodb/". But all possible requests from all "databases" are loaded into this file at once, which is not convenient. Is it possible somehow to create a separate file for writing logs only from the "test database"?
I also found out earlier that in order to keep track of all requests, I need to set the following settings:
$ mongo
MongoDB shell version: 2.4.9
connecting to: test
> use myDb
switched to db myDb
> db.getProfilingLevel()
0
> db.setProfilingLevel(2)
{ "was" : 0, "slowms" : 1, "ok" : 1 }
> db.getProfilingLevel()
2

Mongo shell not creating indexes on running databases

We dumped the definition of indexes using mongo-index-exporter and we try to apply them at each launch of our application, so to achieve a reproducible environment, by executing
mongo --verbose "mongodb://$MONGO_DB_USER:$MONGO_DB_PASSWORD#$MONGO_DB_HOST/$MONGO_DB_NAME?authSource=$MONGO_AUTH_SOURCE&authMode=scram-sha1" indexes.js
on a file like so:
print('Using db ' + db)
setVerboseShell(true)
print('Creating indexes on mycoll1')
db.mycoll1.createIndex({"_id":1}, {"name":"_id_", "background": true});
db.mycoll1.createIndex({"createdAt":1,"field1.field2.field3":1}, {"name":"coll1_field123_idx"});
print('Creating indexes on mycoll2')
db.mycoll2.createIndex({"_id":1}, {"name":"_id_", "background": true});
db.mycoll2.createIndex({"createdAt":1,"field1.field2.field3":1}, {"name":"coll1_field123_idx"});
To create indexes on a replicaSet with five nodes, we are performing the
following command:
mongo --verbose "mongodb://$MONGO_DB_USER:$MONGO_DB_PASSWORD#$MONGO_DB_HOST/$MONGO_DB_NAME?authSource=$MONGO_AUTH_SOURCE&authMode=scram-sha1" indexes.js
this works fine for us in QA, where MONGO_DB_HOST is a single node and we are using a fresh new empty database, and doesn't work in production where additionally the database is already existing (and the collection have contents).
Additional relevant information:
background mode doesn't make any difference
The verbose mode doesn't work, i.e. although we launch mongo client with -v and we do a setVerbose(true) nothing is logged on the console
Our mongo shell is 3.6.11 and our mongo server is 3.2.9
Copy pastying the commands inside a mongo shell executed on the server works terminates immediately and results in the following output
{
"createdCollectionAutomatically" : false,
"numIndexesBefore" : 11,
"numIndexesAfter" : 11,
"note" : "all indexes already exist",
"ok" : 1
}

Mongo Shell No Method Find

I am running Debian with MongoDB shell version: 2.4.3
I run
use dbname
db.stats.find()
And it outputs the following
> db.stats.find()
Mon May 13 17:55:20.933 JavaScript execution failed: TypeError: Object function (scale){
return this.runCommand( { dbstats : 1 , scale : scale } );
} has no method 'find'
However running it on other collections works fine.
This mongo instance is being used with nodejs.
If you really created a collection named stats in your database dbname then I would advise you to rename it. In the shell the db object has a stats() method for looking at statistics of the database.
Meanwhile you can use slightly more complex syntax:
> db.getSiblingDB("dbname").getCollection("stats").find()
Fetched 0 record(s) in 4ms
Or if you are in dbname then:
> db.getCollection("stats").find()
I presume you want db.stats().

What is the BSON doc (query) for the cmd `show dbs` in MongoDB?

According to Getting Started with MongoDB, we can use show dbs to get the list of existing databases.
But this is a kind of command running in the mongo shell.
My question is that how to write a mongodb query (bson) for the list of databases, and where this query should be sent to?
It's not a query, but you can run the listDatabases command against the admin database to get a list of databases in BSON:
> use admin
switched to db admin
> db.runCommand({listDatabases : 1})
{
"databases" : [
{
"name" : "local",
"sizeOnDisk" : 83886080,
"empty" : false
},
],
"totalSize" : 83886080,
"ok" : 1
}
Most programming language engines for MongoDB can also run commands in addition to queries given the right syntax. For example, in Java:
DB db = mongo.getDB("admin");
DBObject cmd = new BasicDBObject("listDatabases", 1);
CommandResult result = db.command(cmd);
Interestingly, if you're really insistent on it being a query, you can query the virtual collection $cmd on the admin database to run commands by submitting queries:
> use admin
switched to db admin
> db.$cmd.findOne({"listDatabases":1})

MongoDB logging all queries

The question is as basic as it is simple... How do you log all queries in a "tail"able log file in mongodb?
I have tried:
setting the profiling level
setting the slow ms parameter starting
mongod with the -vv option
The /var/log/mongodb/mongodb.log keeps showing just the current number of active connections...
You can log all queries:
$ mongo
MongoDB shell version: 2.4.9
connecting to: test
> use myDb
switched to db myDb
> db.getProfilingLevel()
0
> db.setProfilingLevel(2)
{ "was" : 0, "slowms" : 1, "ok" : 1 }
> db.getProfilingLevel()
2
> db.system.profile.find().pretty()
Source: http://docs.mongodb.org/manual/reference/method/db.setProfilingLevel/
db.setProfilingLevel(2) means "log all operations".
I ended up solving this by starting mongod like this (hammered and ugly, yeah... but works for development environment):
mongod --profile=1 --slowms=1 &
This enables profiling and sets the threshold for "slow queries" as 1ms, causing all queries to be logged as "slow queries" to the file:
/var/log/mongodb/mongodb.log
Now I get continuous log outputs using the command:
tail -f /var/log/mongodb/mongodb.log
An example log:
Mon Mar 4 15:02:55 [conn1] query dendro.quads query: { graph: "u:http://example.org/people" } ntoreturn:0 ntoskip:0 nscanned:6 keyUpdates:0 locks(micros) r:73163 nreturned:6 reslen:9884 88ms
Because its google first answer ...
For version 3
$ mongo
MongoDB shell version: 3.0.2
connecting to: test
> use myDb
switched to db
> db.setLogLevel(1)
http://docs.mongodb.org/manual/reference/method/db.setLogLevel/
MongoDB has a sophisticated feature of profiling. The logging happens in system.profile collection. The logs can be seen from:
db.system.profile.find()
There are 3 logging levels (source):
Level 0 - the profiler is off, does not collect any data. mongod always writes operations longer than the slowOpThresholdMs threshold to its log. This is the default profiler level.
Level 1 - collects profiling data for slow operations only. By default slow operations are those slower than 100 milliseconds.
You can modify the threshold for “slow” operations with the slowOpThresholdMs runtime option or the setParameter command. See the Specify the Threshold for Slow Operations section for more information.
Level 2 - collects profiling data for all database operations.
To see what profiling level the database is running in, use
db.getProfilingLevel()
and to see the status
db.getProfilingStatus()
To change the profiling status, use the command
db.setProfilingLevel(level, milliseconds)
Where level refers to the profiling level and milliseconds is the ms of which duration the queries needs to be logged. To turn off the logging, use
db.setProfilingLevel(0)
The query to look in the system profile collection for all queries that took longer than one second, ordered by timestamp descending will be
db.system.profile.find( { millis : { $gt:1000 } } ).sort( { ts : -1 } )
I made a command line tool to activate the profiler activity and see the logs in a "tail"able way --> "mongotail":
$ mongotail MYDATABASE
2020-02-24 19:17:01.194 QUERY [Company] : {"_id": ObjectId("548b164144ae122dc430376b")}. 1 returned.
2020-02-24 19:17:01.195 QUERY [User] : {"_id": ObjectId("549048806b5d3db78cf6f654")}. 1 returned.
2020-02-24 19:17:01.196 UPDATE [Activation] : {"_id": "AB524"}, {"_id": "AB524", "code": "f2cbad0c"}. 1 updated.
2020-02-24 19:17:10.729 COUNT [User] : {"active": {"$exists": true}, "firstName": {"$regex": "mac"}}
...
But the more interesting feature (also like tail) is to see the changes in "real time" with the -f option, and occasionally filter the result with grep to find a particular operation.
See documentation and installation instructions in: https://github.com/mrsarm/mongotail
(also runnable from Docker, specially if you want to execute it from Windows https://hub.docker.com/r/mrsarm/mongotail)
if you want the queries to be logged to mongodb log file, you have to set both
the log level and the profiling, like for example:
db.setLogLevel(1)
db.setProfilingLevel(2)
(see https://docs.mongodb.com/manual/reference/method/db.setLogLevel)
Setting only the profiling would not have the queries logged to file, so you can only get it from
db.system.profile.find().pretty()
Once profiling level is set using db.setProfilingLevel(2).
The below command will print the last executed query.
You may change the limit(5) as well to see less/more queries.
$nin - will filter out profile and indexes queries
Also, use the query projection {'query':1} for only viewing query field
db.system.profile.find(
{
ns: {
$nin : ['meteor.system.profile','meteor.system.indexes']
}
}
).limit(5).sort( { ts : -1 } ).pretty()
Logs with only query projection
db.system.profile.find(
{
ns: {
$nin : ['meteor.system.profile','meteor.system.indexes']
}
},
{'query':1}
).limit(5).sort( { ts : -1 } ).pretty()
The profiler data is written to a collection in your DB, not to file. See http://docs.mongodb.org/manual/tutorial/manage-the-database-profiler/
I would recommend using 10gen's MMS service, and feed development profiler data there, where you can filter and sort it in the UI.
I think that while not elegant, the oplog could be partially used for this purpose: it logs all the writes - but not the reads...
You have to enable replicatoon, if I'm right. The information is from this answer from this question: How to listen for changes to a MongoDB collection?
Setting profilinglevel to 2 is another option to log all queries.
db.setProfilingLevel(2,-1)
This worked! it logged all query info in mongod log file
I recommend checking out mongosniff. This can tool can do everything you want and more. Especially it can help diagnose issues with larger scale mongo systems and how queries are being routed and where they are coming from since it works by listening to your network interface for all mongo related communications.
http://docs.mongodb.org/v2.2/reference/mongosniff/
I wrote a script that will print out the system.profile log in real time as queries come in. You need to enable logging first as stated in other answers. I needed this because I'm using Windows Subsystem for Linux, for which tail still doesn't work.
https://github.com/dtruel/mongo-live-logger
db.adminCommand( { getLog: "*" } )
Then
db.adminCommand( { getLog : "global" } )
This was asked a long time ago but this may still help someone:
MongoDB profiler logs all the queries in the capped collection system.profile. See this: database profiler
Start mongod instance with --profile=2 option that enables logging all queries
OR if mongod instances is already running, from mongoshell, run db.setProfilingLevel(2) after selecting database. (it can be verified by db.getProfilingLevel(), which should return 2)
After this, I have created a script which utilises mongodb's tailable cursor to tail this system.profile collection and write the entries in a file.
To view the logs I just need to tail it:tail -f ../logs/mongologs.txt.
This script can be started in background and it will log all the operation on the db in the file.
My code for tailable cursor for the system.profile collection is in nodejs; it logs all the operations along with queries happening in every collection of MyDb:
const MongoClient = require('mongodb').MongoClient;
const assert = require('assert');
const fs = require('fs');
const file = '../logs/mongologs'
// Connection URL
const url = 'mongodb://localhost:27017';
// Database Name
const dbName = 'MyDb';
//Mongodb connection
MongoClient.connect(url, function (err, client) {
assert.equal(null, err);
const db = client.db(dbName);
listen(db, {})
});
function listen(db, conditions) {
var filter = { ns: { $ne: 'MyDb.system.profile' } }; //filter for query
//e.g. if we need to log only insert queries, use {op:'insert'}
//e.g. if we need to log operation on only 'MyCollection' collection, use {ns: 'MyDb.MyCollection'}
//we can give a lot of filters, print and check the 'document' variable below
// set MongoDB cursor options
var cursorOptions = {
tailable: true,
awaitdata: true,
numberOfRetries: -1
};
// create stream and listen
var stream = db.collection('system.profile').find(filter, cursorOptions).stream();
// call the callback
stream.on('data', function (document) {
//this will run on every operation/query done on our database
//print 'document' to check the keys based on which we can filter
//delete data which we dont need in our log file
delete document.execStats;
delete document.keysExamined;
//-----
//-----
//append the log generated in our log file which can be tailed from command line
fs.appendFile(file, JSON.stringify(document) + '\n', function (err) {
if (err) (console.log('err'))
})
});
}
For tailable cursor in python using pymongo, refer the following code which filters for MyCollection and only insert operation:
import pymongo
import time
client = pymongo.MongoClient()
oplog = client.MyDb.system.profile
first = oplog.find().sort('$natural', pymongo.ASCENDING).limit(-1).next()
ts = first['ts']
while True:
cursor = oplog.find({'ts': {'$gt': ts}, 'ns': 'MyDb.MyCollection', 'op': 'insert'},
cursor_type=pymongo.CursorType.TAILABLE_AWAIT)
while cursor.alive:
for doc in cursor:
ts = doc['ts']
print(doc)
print('\n')
time.sleep(1)
Note: Tailable cursor only works with capped collections. It cannot be used to log operations on a collection directly, instead use filter: 'ns': 'MyDb.MyCollection'
Note: I understand that the above nodejs and python code may not be of much help for some. I have just provided the codes for reference.
Use this link to find documentation for tailable cursor in your languarge/driver choice Mongodb Drivers
Another feature that i have added after this logrotate.
Try out this package to tail all the queries (without oplog operations): https://www.npmjs.com/package/mongo-tail-queries
(Disclaimer: I wrote this package exactly for this need)