Mongo database extremely slow until I restart - mongodb

I just inherited an application from another developer, and I've been asked to fix some latency issues that users have been experiencing. The problem is that any page that makes db calls to mongo takes several minutes to load in the browser.
When I restart mongo, however, everything speeds up again, and the application functions normally. I see several cron jobs that run throughout the day, and I believe one of these may be causing mongo to slow down.
Unfortunately, I have no experience with mongo (only mysql), and I really don't have any idea of what I'm looking for in terms of things that could be making mongo run so slowly.
Anyways, I was hoping someone could suggest some potential things that could be causing the latency so I can approach this problem better. I have looked in the mongo logs, and the only thing I see that could be of concern is a message that says:
warning: can't find plugin [asc]
I know this may point to an indexing problem, but are there any other obvious things I should be investigating?

From what I read at https://groups.google.com/forum/?fromgroups=#!topic/mongodb-user/pqPvMq7cSBw it looks like one of your queries declared
db.a2.find().sort({a:"asc"})
rather than
db.a2.find().sort({a:1})
In MongoDB you need to declare your sorting with either 1 or -1, there's no asc or desc constants for the sorting. So I would recommend that you check if any of your queries runs incorrectly. You can check what queries are running through the log files (with correct profiling settings) http://docs.mongodb.org/manual/tutorial/manage-the-database-profiler/ . You may use mongotop (http://docs.mongodb.org/manual/reference/mongotop/) to see where the most time reading/writing data is spent for your collections, as well.

Related

Time-consuming queries to PostgreSQL Database are duplicated

After restoring db-server from snapshot something strange started happening with our database. Basically it can be described as all time-consuming queries are seems to be duplicated. At least as pg_stat_activity shows it
These lines are almost equal except for their PIDs and client addresses.
Usually I'd think that that's just a mistake of dev team (multiple equal queries at a time in code, cron misconfiguration, etc), but one of those time-consuming selects comes from PowerBI which I believe to be quite reliable in terms of loading data.
Has anybody ever stumbled upon this problem?
Turned out that's the way pg_stat_activity shows parallel workers processing single query. You can make sure that's the case by getting backend_type of these records.

storing huge amounts of data in mongo

I am working on a front end system for a radius server.
The radius server will pass updates to the system every 180 seconds. Which means if I have about 15,000 clients that would be around 7,200,000 entries per day...Which is a lot.
I am trying to understand what the best possible way to store and retrieve this data will be. Obviously as time goes on, this will become substantial. Will MongoDB handle this? Typical document is not much, something this
{
id: 1
radiusId: uniqueId
start: 2017-01-01 14:23:23
upload: 102323
download: 1231556
}
However, there will be MANY of these records. I guess this is something similar to the way that SNMP NMS servers handle data which as far as I know they use RRD to do this.
Currently in my testing I just push every document into a single collection. So I am asking,
A) Is Mongo the right tool for the job and
B) Is there a better/more preferred/more optimal way to store the data
EDIT:
OK, so just incase someone comes across this and needs some help.
I ran it for a while in mongo, I was really not satisfied with performance. We can chalk this up to the hardware I was running on, perhaps my level of knowledge or the framework I was using. However I found a solution that works very well for me. InfluxDB pretty much handles all of this right out of the box, its a time series database which is effectively the data I am trying to store (https://github.com/influxdata/influxdb). Performance for me has been like night & day. Again, could all be my fault, just updating this.
EDIT 2:
So after a while I think I figured out why I never got the performance I was after with Mongo. I am using sailsjs as framework and it was searching by id using regex, which obviously has a huge performance hit. I will eventually try migrate back to Mongo instead of influx and see if its better.
15,000 clients updating every 180 seconds = ~83 insertions / sec. That's not a huge load even for a moderately sized DB server, especially given the very small size of the records you're inserting.
I think MongoDB will do fine with that load (also, to be honest, almost any modern SQL DB would probably be able to keep up as well). IMHO, the key points to consider are these:
Hardware: make sure you have enough RAM. This will primarily depend on how many indexes you define, and how many queries you're doing. If this is primarily a log that will rarely be read, then you won't need much RAM for your working set (although you'll need enough for your indexes). But if you're also running queries then you'll need much more resources
If you are running extensive queries, consider setting up a replica set. That way, your master server can be reserved for writing data, ensuring reliability, while your slaves can be configured to serve your queries without affecting the write reliability.
Regarding the data structure, I think that's fine, but it'll really depend on what type of queries you wish to run against it. For example, if most queries use the radiusId to reference another table and pull in a bunch of data for each record, then you might want to consider denormalizing some of that data. But again, that really depends on the queries you run.
If you're really concerned about managing the write load reliably, consider using the Mongo front-end only to manage the writes, and then dumping the data to a data warehouse backend to run queries on. You can partially do this by running a replica set like I mentioned above, but the disadvantage of a replica set is that you can't restructure the data. The data in each member of the replica set is exactly the same (hence the name, replica set :-) Oftentimes, the best structure for writing data (normalized, small records) isn't the best structure for reading data (denormalized, large records with all the info and joins you need already done). If you're running a bunch of complex queries referencing a bunch of other tables, using a true data warehouse for the querying part might be better.
As your write load increases, you may consider sharding. I'm assuming the RadiusId points to each specific server among a pool of Radius servers. You could potentially shard on that key, which would split the writes based on which server is sending the data. Thus, as you increase your radius servers, you can increase your mongo servers proportionally to maintain write reliability. However, I don't think you need to do this right away as I bet one reasonably provisioned server should be able to manage the load you've specified.
Anyway, those are my preliminary suggestions.

PostgreSQL. Slow queries in log file are fast in psql

I have an application written on Play Framework 1.2.4 with Hibernate(default C3P0 connection pooling) and PostgreSQL database (9.1).
Recently I turned on slow queries logging ( >= 100 ms) in postgresql.conf and found some issues.
But when I tried to analyze and optimize one particular query, I found that it is blazing fast in psql (0.5 - 1 ms) in comparison to 200-250 ms in the log. The same thing happened with the other queries.
The application and database server is running on the same machine and communicating using localhost interface.
JDBC driver - postgresql-9.0-801.jdbc4
I wonder what could be wrong, because query duration in the log is calculated considering only database processing time excluding external things like network turnarounds etc.
Possibility 1: If the slow queries occur occasionally or in bursts, it could be checkpoint activity. Enable checkpoint logging (log_checkpoints = on), make sure the log level (log_min_messages) is 'info' or lower, and see what turns up. Checkpoints that're taking a long time or happening too often suggest you probably need some checkpoint/WAL and bgwriter tuning. This isn't likely to be the cause if the same statements are always slow and others always perform well.
Possibility 2: Your query plans are different because you're running them directly in psql while Hibernate, via PgJDBC, will at least sometimes be doing a PREPARE and EXECUTE (at the protocol level so you won't see actual statements). For this, compare query performance with PREPARE test_query(...) AS SELECT ... then EXPLAIN ANALYZE EXECUTE test_query(...). The parameters in the PREPARE are type names for the positional parameters ($1,$2,etc); the parameters in the EXECUTE are values.
If the prepared plan is different to the one-off plan, you can set PgJDBC's prepare threshold via connection parameters to tell it never to use server-side prepared statements.
This difference between the plans of prepared and unprepared statements should go away in PostgreSQL 9.2. It's been a long-standing wart, but Tom Lane dealt with it for the up-coming release.
It's very hard to say for sure without knowing all the details of your system, but I can think of a couple of possibilities:
The query results are cached. If you run the same query twice in a short space of time, it will almost always complete much more quickly on the second pass. PostgreSQL maintains a cache of recently retrieved data for just this purpose. If you are pulling the queries from the tail of your log and executing them immediately this could be what's happening.
Other processes are interfering. The execution time for a query varies depending on what else is going on in the system. If the queries are taking 100ms during peak hour on your website when a lot of users are connected but only 1ms when you try them again late at night this could be what's happening.
The point is you are correct that the query duration isn't affected by which library or application is calling it, so the difference must be coming from something else. Keep looking, good luck!
There are several possible reasons. First if the database was very busy when the slow queries excuted, the query may be slower. So you may need to observe the load of the OS at that moment for future analysis.
Second the history plan of the sql may be different from the current session plan. So you may need to install auto_explain to see the actual plan of the slow query.

MongoDB - anonymizing 600k records

I am trying to anonymize a large data set of about 600k records (removing sensitive information like email, etc.) so that it can be used for some performance tests.
I am using Scala (Casbah) with Mongo. The actual script is pretty simple and straightforward. When I run the script, the entire process starts off pretty fast - parsing 1000 records every 2-3 seconds, but it slows down tremendously and starts crawling very slowly.
I know this is pretty vague without too much details, but any idea why this is happening, and any hints on how I could speed this up?
It turned out to be an issue with the driver and not with Mongo. When I tried the same inserts using the mongo shell, it was through without breaking a sweat.
UPDATE
So, I tried both approaches. Inserting into existing collection and dumping the results in a new collection. The first approach was faster for me. Of course, one should never assume this to be always true and must benchmark before choosing the first approach over the second. In both case, Mongo was very very fast (meaning - it was not taking hours to get this done). There was a problem with the Java interface I was using to connect with Mongo, which was more of a stupid mistake on my part.

SQL Server & ADO NET : how to automatically cancel long running user query?

I have a .NET Core 2.1 application that allows users to search a large database, with the possibility of using lots of parameters. The data access is done through ADO.NET. Some of the queries generated result in long running queries (several hours). Obviously, the user gives up on waiting, but the query chugs along in SQL Server.
I realize that the root cause is the design of the app, but I would like a quick solution for now, if possible.
I have tried many solutions, but none seem to work as expected.
What I have tried:
CommandTimeout
CommandTimeout works as expected with ExecuteNonQuery but does not work with ExecuteReader, as discussed in this forum
When you execute command.ExecuteReader(), you don't get this exception because the server responds on time. The application doesn't respond because it reads data to the memory, and the ExecuteReader() method doesn't return control until all the data is read.
I have also tried using SqlDataAdapter, but this does not work either.
SQL Server query governor
SQL Server's query governor works off of the estimated execution plan, and while it does work sometimes, it does not always catch inefficient queries.
SQL Server execution time-out
Tools > Options > Query Execution > SQL Server > General
I'm not sure what this does, but after entering a value of 1, SQL Server still allows queries to run as long as they need. I tried restarting the server instance, but that did not make any difference.
Again, I realize that the cause of this problem is the way that the queries are generated, but with so many parameters and so much data, fine tuning a solution in the design of the application may take some time. As of now, we are manually killing any spid associated with this app that has run over 10 or so minutes.
EDIT:
I abandoned the hope of finding a simple solution. If you're having a similar issue, here is what we did to address it:
We created a .net core console app that polls the database for queries running over a certain allotted time. The app looks at the login name and the amount of time it's been running and determines whether to kill the process.
https://learn.microsoft.com/en-us/dotnet/api/system.data.sqlclient.sqlcommand.cancel?view=netframework-4.7.2
Looking through the documentation on SqlCommand.Cancel, I think it might solve your issue.
If you were to create and start a Timer before you call ExecuteReader(), you could then keep track of how long the query is running, and eventually call the Cancel method yourself.
(Note: I wanted to add this as a comment but I don't have the reputation to be allowed to yet)