find index of max from two dimensional time series data in MATLAB - matlab

I am trying to find the max value and its location. Following is the example of the programme,
fname = dir('*.mat');
nfiles = length(fname);
vals = cell(nfiles,1);
phen = cell(nfiles,1);
for i = 1:nfiles
vals{i} = load(fname(i).name);
phen{i} = (vals{i}.phen);
[M, position] = max(phen{i},[],3);
clear vals
end
After the program is executed, all the position is showing 1. There are total 15 files and M is taking the values of the last file.
How to overcome this prpoblem? Any help will be appreciated

I am not sure I understand your question.
However, at every iteration you are computing the max value and position and overwriting them in the next iteration (i.e. not storing them anywhere). So at the end of the loop M and position would correspond to the last entry phen{nfiles}.

Each time you run through your for loop, you are overwriting M with the max from the most recently loaded phen from the dimension of 3. Since your data is only two dimensional, you probably should be using a dimension of 1 or 2 instead of 3. Because you are using 3, max is returning 1 to position. Fix the dimension issue and position should then be the correct value.
What you could do is make M and position the size of nfiles. So instead of
[M, position] = max(phen{i},[],3);
do
%create M and positions arrays here
%ex. M(nfiles) = 0; or a smaller value if your values are negative
%do the same for positions
[M(i), positions(i)] = max(phen{i},[],1); %1 or 2 correction here here!
then after your for loop
...
end
[maxM, maxMposition] = max(M);
position = positions(maxMposition);

Related

Exceeding matrix dimensions when averaging elements

I am trying to create a vector with the average of every 48 elements in eddyCO2.
Tweedle = eddyCO2(1:47:end);
Tweedle(1) = mean(eddyCO2(1):eddyCO2(48));
for i = 2:length(Tweedle)
Tweedle(i) = mean(eddyCO2((i-1)*48):eddyCO2(i*48)); (ERROR: Index exceeds matrix dimensions)
end
I've tried reshaping and the only thing that seems to work is entering values manually but the size is too large to work without a loop. Why is this error appearing?
Does the following modified version of your script do what you intend? Hope it helps.
Tweedle = eddyCO2(1:48:end);
sz = length(eddyCO2);
for i = 1:length(Tweedle)-1
Tweedle(i) = mean(eddyCO2((i-1)*48+1):eddyCO2(i*48)); % averages elements 1-48, 49-96, etc.
end
Tweedle(i+1) = mean(eddyCO2(i*48+1):sz); % averages remaining items at end of vector

Filter data with standard derivation in loop

I have acceleration (10240x31) data that I want to filter by replacing every data point that exceeds the threshold value of 4 times standard derivation of each column with the mean value of the two adjacent data points.
First, I wanted to replace every data point with a zero, if it exceeds the maximum value. This is my loop:
for w = 1:31
Sigma(w) = std(zacceleration(:,w));
zacceleration(zacceleration<(-4*Sigma(w))) = 0;
zacceleration(zacceleration>(4*Sigma(w))) = 0;
end
That code works if w is just one number, for example:
w = 1;
But when w changes every iteration, the filtered data only contains the values that don't exceed the threshold value of the last dataset, Sigma(31).
So, I guess that I overwrite my data or something like that but I cant seem to find a solution.
Can anybody please give me a hint?
Thank you in advance and best regards.
I think I got it now.
Sigma = std(zacceleration);
for a = 1:10240;
for b = 1:31;
if zacceleration(a,b)<(-4*Sigma(b))
zacceleration(a,b) = 0;
end
if zacceleration(a,b)>(4*Sigma(b))
zacceleration(a,b) = 0;
end
end
end

Extract values from vector and save in new vector

I have a vector Cycle() that can contain several elements with a variable size.
I want to extract from this vector all the values which are in the odd columns, i.e. Cycle(1), Cycle(3), Cycle(5) ... and save them into a new vector Rcycle.
That's my code:
Rcycle = zeros(1, length(cycle)/2);
Rcycle(1) = cycle(1);
for j=3:length(cycle);
for i=2:length(Rcycle);
Rcycle(i) = cycle(j);
j = j+2;
end
end
Also I want to extract from Cycle() the even columns and save them in a vector Lcycle. My code:
Lcycle = zeros(1, length(cycle)/2);
Lcycle(1) = cycle(2);
for k=4:length(cycle);
for i=2:length(cycle);
Lcycle(i) = cycle(k);
k = k+2;
end
end
By running this for a sample Cycle() with 12 elements I get the right results for Lcycle, but the wrong ones for Rcycle. Also I get the error that my matrix have exceeded its dimension.
Has anyone any idea how to solve this in a more smooth way?
Use vector indexing!
Rcyle=cycle(1:2:end); %// Take from cycle starting from 1, each 2, until the end
Lcycle=cycle(2:2:end);%// same, but start at 2.

Plotting multiple lines within a FOR loopin MATLAB

Okay so this sounds easy but no matter how many times I have tried I still cannot get it to plot correctly. I need only 3 lines on the same graph however still have an issue with it.
iO = 2.0e-6;
k = 1.38e-23;
q = 1.602e-19;
for temp_f = [75 100 125]
T = ((5/9)*temp_f-32)+273.15;
vd = -1.0:0.01:0.6;
Id = iO*(exp((q*vd)/(k*T))-1);
plot(vd,Id,'r',vd,Id,'y',vd,Id,'g');
legend('amps at 75 F', 'amps at 100 F','amps at 125 F');
end;
ylabel('Amps');
xlabel('Volts');
title('Current through diode');
Now I know the plot function that is currently in their isn't working and that some kind of variable needs setup like (vd,Id1,'r',vd,Id2,'y',vd,Id3,'g'); however I really can't grasp the concept of changing it and am seeking help.
You can use the "hold on" function to make it so each plot command plots on the same window as the last.
It would be better to skip the for loop and just do this all in one step though.
iO = 2.0e-6;
k = 1.38e-23;
q = 1.602e-19;
temp_f = [75 100 125];
T = ((5/9)*temp_f-32)+273.15;
vd = -1.0:0.01:0.6;
% Convert this 1xlength(vd) vector to a 3xlength(vd) vector by copying it down two rows.
vd = repmat(vd,3,1);
% Convert this 1x3 array to a 3x1 array.
T=T';
% and then copy it accross to length(vd) so each row is all the same value from the original T
T=repmat(T,1,length(vd));
%Now we can calculate Id all at once.
Id = iO*(exp((q*vd)./(k*T))-1);
%Then plot each row of the Id matrix as a seperate line. Id(1,:) means 1st row, all columns.
plot(vd,Id(1,:),'r',vd,Id(2,:),'y',vd,Id(3,:),'g');
ylabel('Amps');
xlabel('Volts');
title('Current through diode');
And that should get what you want.

How to efficiently find correlation and discard points outside 3-sigma range in MATLAB?

I have a data file m.txt that looks something like this (with a lot more points):
286.842995
3.444398
3.707202
338.227797
3.597597
283.740414
3.514729
3.512116
3.744235
3.365461
3.384880
Some of the values (like 338.227797) are very different from the values I generally expect (smaller numbers).
So, I am thinking that
I will remove all the points that lie outside the 3-sigma range. How can I do that in MATLAB?
Also, the bigger problem is that this file has a separate file t.txt associated with it which stores the corresponding time values for these numbers. So, I'll have to remove the corresponding time values from the t.txt file also.
I am still learning MATLAB, and I know there would be some good way of doing this (better than storing indices of the elements that were removed from m.txt and then removing those elements from the t.txt file)
#Amro is close, but the FIND is unnecessary (look up logical subscripting) and you need to include the mean for a true +/-3 sigma range. I would go with the following:
%# load files
m = load('m.txt');
t = load('t.txt');
%# find values within range
z = 3;
meanM = mean(m);
sigmaM = std(m);
I = abs(m - meanM) <= z * sigmaM;
%# keep values within range
m = m(I);
t = t(I);
%# load files
m = load('m.txt');
t = load('t.txt');
%# find outliers indices
z = 3;
idx = find( abs(m-mean(m)) > z*std(m) );
%# remove them from both data and time values
m(idx) = [];
t(idx) = [];