Mysql server huge memory consumption - database-performance

On Ubuntu, executing the "top" command shows that mysqld constantly uses 61.9% of the memory.(when idle).
I ran "show processlist" on the mysql server and it is idle.
Can anyone explain what might be happening?

Read this: http://www.chriscalender.com/?p=1278
Open my.cnf and add this at the end: performance_schema=0
Restart your services. From 620MB I have now 38MB memory used.

Related

Getting 100% + CPU usage on Linux server

Getting 100% + CPU usage after restoring dbdump file into postgress docker container.
Result of htop command from the server.
Seems like autovacuum reader is consuming more CPU. Can anyone suggest what to do to reduce server CPU load time?
I did restart my postgress docker container and that resolved my problem. but it's for sometime.
Here is how we resolved our this issue: https://dev.to/jaytailor45/the-anatomy-of-a-postgresql-hack-how-it-happened-and-what-we-did-about-it-b9k
Happy coding!!!

Can not stop postgres despite immediate stop

I have this issue that is driving me nuts. Despite all my efforts, I am not able to force my postgres server to shut down. I have followed those instructions : http://www.question-defense.com/2008/10/17/pg_ctl-server-does-not-shut-down-force-postgres-to-shutdown
but still, nothing happens and all I got in the shell is
waiting for server to shut down............................................................... failed
pg_ctl: server does not shut down
Any help much appreciated.
Update: Checking the logs, I have this recurring error :
LOG: checkpoints are occurring too frequently (25 seconds apart)
HINT: Consider increasing the configuration parameter "checkpoint_segments".
After giving it a lot of thoughts especially on the way I installed it at the first place, I realize that I set up the install so the daemon would launch postgres at the start of my machine. Thus, any manual killing would simply result in the recreation of those process by the same daemon.
To resolve this problem you need to stop the daemon from working using launchctl and remove a .plist file in your postgres directory.
Good luck if you face the same problem.
You probably run with the default setting of "checkpoint_segments = 3", that produces the warnings. Your database does many writes, right? It takes some time to write all of this to disk, and your database is quite busy rotating the logfiles, instead doing real work.
If you increase checkpint_segments, you will see performance improvements, and less I/O.
For further readings: https://wiki.postgresql.org/wiki/Tuning_Your_PostgreSQL_Server

safe to kill postgres processes with SIGTERM?

I was debugging a PostgreSQL 9.2 database corruption issue (on Solaris, but I doubt it matters) recently, and I found that we could reproduce it reliably if the client died in the middle of a transaction and then I shut down PostgreSQL by doing pkill postgres (which basically sends SIGTERM to every running postgres process). If instead we did pkill -QUIT postgres to send SIGQUIT, the database would shut down cleanly and no corruption would occur.
Based on the PostgreSQL 9.2 docs, I think that SIGTERM should be 100% expected by the database server, so why is it not safe to shut down like this? Is it a bug in PostgreSQL, or could I be doing something (configuration, etc.) that would allow the corruption to occur?
I don't think sigterm is what is causing your problem. Again, recommend you ask on dba.stackexchange instead.
If the client dies in the middle of a transacction, then the problem is that the network connection hangs? And then when you kill it you get corruption during WAL replay?
This is a complicated area to troubleshoot but here are some places to begin:
What is going on conncurrently when this happens? What sort of transaction commit load?
How often do WAL logs normally get rotated?
It is possible you could be running into a rare, obscure bug with PostgreSQL (possibly somewhere between the db, kernel, and filesystem), but if so please start by upgrading to latest 9.2 and try to reproduce again. Term and even kill signals are supposed to be 100% safe on PostgreSQL so if you are seeing database corruption, that is not expected.

App to monitor PostgreSQL queries in real time?

I'd like to monitor the queries getting sent to my database from an application. To that end, I've found pg_stat_activity, but more often then not, the rows which are returned read " in transaction". I'm either doing something wrong, am not fast enough to see the queries come through, am confused, or all of the above!
Can someone recommend the most idiot-proof way to monitor queries running against PostgreSQL? I'd prefer some sort of easy-to-use UI based solution (example: SQL Server's "Profiler"), but I'm not too choosy.
PgAdmin offers a pretty easy-to-use tool called server monitor
(Tools ->ServerStatus)
With PostgreSQL 8.4 or higher you can use the contrib module pg_stat_statements to gather query execution statistics of the database server.
Run the SQL script of this contrib module pg_stat_statements.sql (on ubuntu it can be found in /usr/share/postgresql/<version>/contrib) in your database and add this sample configuration to your postgresql.conf (requires re-start):
custom_variable_classes = 'pg_stat_statements'
pg_stat_statements.max = 1000
pg_stat_statements.track = top # top,all,none
pg_stat_statements.save = off
To see what queries are executed in real time you might want to just configure the server log to show all queries or queries with a minimum execution time. To do so set the logging configuration parameters log_statement and log_min_duration_statement in your postgresql.conf accordingly.
pg_activity is what we use.
https://github.com/dalibo/pg_activity
It's a great tool with a top-like interface.
You can install and run it on Ubuntu 21.10 with:
sudo apt install pg-activity
pg_activity
If you are using Docker Compose, you can add this line to your docker-compose.yaml file:
command: ["postgres", "-c", "log_statement=all"]
now you can see postgres query logs in docker-compose logs with
docker-compose logs -f
or if you want to see only postgres logs
docker-compose logs -f [postgres-service-name]
https://stackoverflow.com/a/58806511/10053470
I haven't tried it myself unfortunately, but I think that pgFouine can show you some statistics.
Although, it seems it does not show you queries in real time, but rather generates a report of queries afterwards, perhaps it still satisfies your demand?
You can take a look at
http://pgfouine.projects.postgresql.org/

See and clear Postgres caches/buffers?

Sometimes I run a Postgres query and it takes 30 seconds. Then, I immediately run the same query and it takes 2 seconds. It appears that Postgres has some sort of caching. Can I somehow see what that cache is holding? Can I force all caches to be cleared for tuning purposes?
I'm basically looking for a Postgres version of the following SQL Server command:
DBCC FREEPROCCACHE
DBCC DROPCLEANBUFFERS
But I would also like to know how to see what is actually contained in that buffer.
You can see what's in the PostgreSQL buffer cache using the pg_buffercache module. I've done a presentation called "Inside the PostgreSQL Buffer Cache" that explains what you're seeing, and I show some more complicated queries to help interpret that information that go along with that.
It's also possible to look at the operating system cache too on some systems, see [pg_osmem.py] for one somewhat rough example.
There's no way to clear the caches easily. On Linux you can stop the database server and use the drop_caches facility to clear the OS cache; be sure to heed the warning there to run sync first.
I haven't seen any commands to flush the caches in PostgreSQL. What you see is likely just normal index and data caches being read from disk and held in memory. by both postgresql and the caches in the OS. To get rid of all that, the only way I know of:
What you should do is:
Shutdown the database server (pg_ctl, sudo service postgresql stop, sudo systemctl stop postgresql, etc.)
echo 3 > /proc/sys/vm/drop_caches
This will clear out the OS file/block caches - very important though I don't know how to do that on other OSs. (In case of permission denied, try sudo sh -c "echo 3 > /proc/sys/vm/drop_caches" as in that question)
Start the database server (e.g. sudo service postgresql start, sudo systemctl start postgresql)
Greg Smith's answer about drop_caches was very helpful. I did find it necessary to stop and start the postgresql service, in addition to dropping the caches. Here's a shell script that does the trick. (My environment is Ubuntu 14.04 and PostgreSQL 9.3.)
#!/usr/bin/sudo bash
service postgresql stop
sync
echo 3 > /proc/sys/vm/drop_caches
service postgresql start
I tested with a query that took 19 seconds the first time, and less than 2 seconds on subsequent attempts. After running this script, the query once again took 19 seconds.
I use this command on my linux box:
sync; /etc/init.d/postgresql-9.0 stop; echo 1 > /proc/sys/vm/drop_caches; /etc/init.d/postgresql-9.0 start
It completely gets rid of the cache.
I had this error.
psql:/cygdrive/e/test_insertion.sql:9: ERROR: type of parameter 53
(t_stat_gardien) does not match that when preparing the plan
(t_stat_avant)
I was looking for flushing the current plan and a found this:
DISCARD PLANS
I had this between my inserts and it solves my problem.
Yes, it is possible to clear both the shared buffers postgres cache AND the OS cache. Solution bellow is for Windows... others have already given the linux solution.
As many people already said, to clear the shared buffers you can just restart Postgres (no need to restart the server). But just doing this won't clear the OS cache.
To clear the OS cache used by Postgres, after stopping the service, use the excelent RamMap (https://technet.microsoft.com/en-us/sysinternals/rammap), from the excelent Sysinternals Suite.
Once you execute RamMap, just click "Empty"->"Empty Standby List" in the main menu.
Restart Postgres and you'll see now your next query will be damm slow due to no cache at all.
You can also execute the RamMap without closing Postgres, and probably will have the "no cache" results you want, since as people already said, shared buffers usually gives little impact compared to the OS cache. But for a reliable test, I would rather stop postgres as all before clearing the OS cache to make sure.
Note: AFAIK, I don't recommend clearing the other things besides "Standby list" when using RamMap, because the other data is somehow being used, and you can potentially cause problems/loose data if you do that. Remember that you are clearing memory not only used by postgres files, but any other app and OS as well.
Regards, Thiago L.
Yes, postgresql certainly has caching. The size is controlled by the setting shared_buffers. Other than that, there is as the previous answer mentions, the OS file cache which is also used.
If you want to look at what's in the cache, there is a contrib module called pg_buffercache available (in contrib/ in the source tree, in the contrib RPM, or wherever is appropriate for how you installed it). How to use it is listed in the standard PostgreSQL documentation.
There are no ways to clear out the buffer cache, other than to restart the server. You can drop the OS cache with the command mentioned in the other answer - provided your OS is Linux.
There is pg_buffercache module to look into shared_buffers cache. And at some point I needed to drop cache to make some performance tests on 'cold' cache so I wrote an pg_dropcache extension that does exactly this. Please check it out.
this is my shortcut
echo 1 > /proc/sys/vm/drop_caches; echo 2 > /proc/sys/vm/drop_caches; echo 3 > /proc/sys/vm/drop_caches; rcpostgresql stop; rcpostgresql start;
If you have a dedicated test database, you can set the parameter: shared buffers to 16. That should disable the cache for all queries.
The original heading was "See and Clear" buffers.
Postgres 13 with pg_buffercache extension provides a way to see doc page
On OSX there is a purge command for that:
sync && sudo purge
sync - force completion of pending disk writes (flush cache)
purge - force disk cache to be purged (flushed and emptied)
Credit goes to kenorb answering echo 3 > /proc/sys/vm/drop_caches on Mac OSX