I have doxygen 1.8.5 and Doxverilog (for doxygen 1.7.0). Following the instructions quoted below I get messages saying that patches have previously been applied. Then some of the HUNKs fail.
If I proceed anyway and set up the verilog.cfg, running doxygen with this cfg produces
"Warning: ignoring unsupported tag `OPTIMIZE_OUTPUT_VERILOG =' at line 35, file verilog.cfg"
Then blank output.
The instructions I'm using to setup doxverilog are:
install the doxygen-1.7.0 sources
1. copy the Verilog files verilogparser.y verlogscanner.l and the source files to the doxygen-1.7.0\src directory
2. copy the patch file verilog.patch to directory doxygen-1.7.0
3. open a shell in the doxygen-1.7.0 directory
3.1 configure doxygen
sh configure
3.2 make patch # patch -p1 < verilog.patch
4 compile the source files
make all
5 If the compilation was successful create a doxygen configuration file with # doxygen -s -g verilog.cfg
In the configuration file you should see the option OPTIMIZE_OUTPUT_VERILOG.
The file patterns for the Verilog parser are *.v and *.V
Related
let say i have a new yocto image call stargazer-cmd
what file should i edit so that every time i source poky/oe-init-env
it display as a build option to the user?
kj#kj-Aspire-V3-471G:~/stm32Yoctominimal$ source poky/oe-init-build-env build-mp1/
### Shell environment set up for builds. ###
You can now run 'bitbake <target>'
Common targets are:
core-image-minimal
core-image-sato
meta-toolchain
meta-ide-support
I wish to add stargazer-cmd on top of core-image-minimal, i am not sure what to google and what is the file i need to change.
Let me explain how to add a custom configuration to the OpenEmbedded build process.
First of all, here is the process that is done when running:
source poky/oe-init-build-env
The oe-init-build-env script initializes OEROOT variable to point to the location of the script itself.
The oe-init-build-env script sources another file $OEROOT/scripts/oe-buildenv-internal which will:
Check if OEROOT is set
Set BUILDDIR to your custom build directory name $1, or just build if you do not provide one
Set BBPATH to the poky/bitbake folder
Adds $BBPATH/bin and OEROOT/scripts to PATH (This will enable commands like bitbake and bitbake-layers ...)
Export BUILDDIR and PATH to the next file
The oe-init-build-env script continues by running the final build script with:
TEMPLATECONF="$TEMPLATECONF" $OEROOT/scripts/oe-setup-builddir
The oe-setup-builddir script will:
Check if BUILDDIR is set
Create the conf directory under $BUILDDIR
Sources a template file that will check if there is a TEMPLATECONF variable is set:
. $OEROOT/.templateconf
That file contains:
# Template settings
TEMPLATECONF=${TEMPLATECONF:-meta-poky/conf}
it means that if TEMPLATECONF variable is not set, set it to meta-poky/conf, and that is where the default local.conf and bblayers.conf are coming from.
Copy $TEMPLATECONF to $BUILDDIR/conf/templateconf.cfg
Set some variables pointing to custom local.conf and bblayers.conf:
OECORELAYERCONF="$TEMPLATECONF/bblayers.conf.sample"
OECORELOCALCONF="$TEMPLATECONF/local.conf.sample"
OECORENOTESCONF="$TEMPLATECONF/conf-notes.txt"
In the oe-setup-builddir there is a comment saying that TEMPLATECONF can point to a directory:
#
# $TEMPLATECONF can point to a directory for the template local.conf & bblayers.conf
#
Copy local.conf.sample and bblayers.conf.sample from TEMPLATECONF directory into BUIDDIR/conf:
cp -f $OECORELOCALCONF "$BUILDDIR/conf/local.conf"
sed -e "s|##OEROOT##|$OEROOT|g" \
-e "s|##COREBASE##|$OEROOT|g" \
$OECORELAYERCONF > "$BUILDDIR/conf/bblayers.conf"
Finally it will print what is inside OECORENOTESCONF which points to TEMPLATECONF/conf-notes.txt:
[ ! -r "$OECORENOTESCONF" ] || cat $OECORENOTESCONF
and by default that is located under meta-poky/conf/conf-notes.txt:
### Shell environment set up for builds. ###
You can now run 'bitbake <target>'
Common targets are:
core-image-minimal
core-image-sato
meta-toolchain
meta-ide-support
You can also run generated qemu images with a command like 'runqemu qemux86'
Other commonly useful commands are:
- 'devtool' and 'recipetool' handle common recipe tasks
- 'bitbake-layers' handles common layer tasks
- 'oe-pkgdata-util' handles common target package tasks
So, now, after understanding all of that, here is what you can do:
Create a custom template directory for your project, containing:
local.conf.sample
bblayers.conf.sample
conf-notes.txt
Do not forget to set the path to poky in bblayers.conf to ##OEROOT## as it will be set automatically by the build script.
Set your custom message in conf-notes.txt
Before any new build, just set TEMPLATECONF:
TEMPLATECONF="<path/to/template-directory>" source poky/oe-init-build-env <build_name>
Then, you will find a build with your custom local.conf and bblayers.conf with additional file conf/templateconf.cfg containing the path of TEMPLATECONF
conf/conf-notes.txt in your layer.
OECORENOTESCONF should point to the file.
My goal is to use bcftools to check that the reference alleles in my dataset (vcf file) match with a reference genome (fasta file) using the fixref plugin.
Working on command line, I first set the following environment:
export BCFTOOLS_PLUGINS=/path/to/bcftools/plugins
The following code is recommended for test datasets with mismatches:
bcftools +fixref test.bcf -Ob -o output.bcf -- -f ref.fa -m top
When I run this code using my own files (please note that my data is .vcf, not .bcf) I get the following error:
[main] Unrecognized command
If I simply enter:
bcftools
I get a list of the only 5 commands (view, index, cat, ld, ldpair) that I can use. So although I've set the environment, does it somehow need to be activated? Do I need to run my command through a bash script?
bcftools
was pointing to a deprecated version of bcftools (0.1.19) in ../bin/, while
BCFTOOLS_PLUGINS=/path/to/bcftools/plugins
was pointing to the plugins for bcftools version 1.10.2 outside /bin/
Replacing ../bin/bcftools (0.1.19 with 1.10.2) was the fix.
In the book "Embedded Linux Systems with the Yocto Project", Chapter 4 contains a sample called "HelloWorld - BitBake style". I encountered a bunch of problems trying to get the old example working against the "Sumo" release 2.5.
If you're like me, the first error you encountered following the book's instructions was that you copied across bitbake.conf and got:
ERROR: ParseError at /tmp/bbhello/conf/bitbake.conf:749: Could not include required file conf/abi_version.conf
And after copying over abi_version.conf as well, you kept finding more and more cross-connected files that needed to be moved, and then some relative-path errors after that... Is there a better way?
Here's a series of steps which can allow you to bitbake nano based on the book's instructions.
Unless otherwise specified, these samples and instructions are all based on the online copy of the book's code-samples. While convenient for copy-pasting, the online resource is not totally consistent with the printed copy, and contains at least one extra bug.
Initial workspace setup
This guide assumes that you're working with Yocto release 2.5 ("sumo"), installed into /tmp/poky, and that the build environment will go into /tmp/bbhello. If you don't the Poky tools+libraries already, the easiest way is to clone it with:
$ git clone -b sumo git://git.yoctoproject.org/poky.git /tmp/poky
Then you can initialize the workspace with:
$ source /tmp/poky/oe-init-build-env /tmp/bbhello/
If you start a new terminal window, you'll need to repeat the previous command which will get get your shell environment set up again, but it should not replace any of the files created inside the workspace from the first time.
Wiring up the defaults
The oe-init-build-env script should have just created these files for you:
bbhello/conf/local.conf
bbhello/conf/templateconf.cfg
bbhello/conf/bblayers.conf
Keep these, they supersede some of the book-instructions, meaning that you should not create or have the files:
bbhello/classes/base.bbclass
bbhello/conf/bitbake.conf
Similarly, do not overwrite bbhello/conf/bblayers.conf with the book's sample. Instead, edit it to add a single line pointing to your own meta-hello folder, ex:
BBLAYERS ?= " \
${TOPDIR}/meta-hello \
/tmp/poky/meta \
/tmp/poky/meta-poky \
/tmp/poky/meta-yocto-bsp \
"
Creating the layer and recipe
Go ahead and create the following files from the book-samples:
meta-hello/conf/layer.conf
meta-hello/recipes-editor/nano/nano.bb
We'll edit these files gradually as we hit errors.
Can't find recipe error
The error:
ERROR: BBFILE_PATTERN_hello not defined
It is caused by the book-website's bbhello/meta-hello/conf/layer.conf being internally inconsistent. It uses the collection-name "hello" but on the next two lines uses _test suffixes. Just change them to _hello to match:
# Set layer search pattern and priority
BBFILE_COLLECTIONS += "hello"
BBFILE_PATTERN_hello := "^${LAYERDIR}/"
BBFILE_PRIORITY_hello = "5"
Interestingly, this error is not present in the printed copy of the book.
No license error
The error:
ERROR: /tmp/bbhello/meta-hello/recipes-editor/nano/nano.bb: This recipe does not have the LICENSE field set (nano)
ERROR: Failed to parse recipe: /tmp/bbhello/meta-hello/recipes-editor/nano/nano.bb
Can be fixed by adding a license setting with one of the values that bitbake recognizes. In this case, add a line onto nano.bb of:
LICENSE="GPLv3"
Recipe parse error
ERROR: ExpansionError during parsing /tmp/bbhello/meta-hello/recipes-editor/nano/nano.bb
[...]
bb.data_smart.ExpansionError: Failure expanding variable PV_MAJOR, expression was ${#bb.data.getVar('PV',d,1).split('.')[0]} which triggered exception AttributeError: module 'bb.data' has no attribute 'getVar'
This is fixed by updating the special python commands being used in the recipe, because #bb.data was deprecated and is now removed. Instead, replace it with #d, ex:
PV_MAJOR = "${#d.getVar('PV',d,1).split('.')[0]}"
PV_MINOR = "${#d.getVar('PV',d,1).split('.')[1]}"
License checksum failure
ERROR: nano-2.2.6-r0 do_populate_lic: QA Issue: nano: Recipe file fetches files and does not have license file information (LIC_FILES_CHKSUM) [license-checksum]
This can be fixed by adding a directive to the recipe telling it what license-info-containing file to grab, and what checksum we expect it to have.
We can follow the way the recipe generates the SRC_URI, and modify it slightly to point at the COPYING file in the same web-directory. Add this line to nano.bb:
LIC_FILES_CHKSUM = "${SITE}/v${PV_MAJOR}.${PV_MINOR}/COPYING;md5=f27defe1e96c2e1ecd4e0c9be8967949"
The MD5 checksum in this case came from manually downloading and inspecting the matching file.
Done!
Now bitbake nano ought to work, and when it is complete you should see it built nano:
/tmp/bbhello $ find ./tmp/deploy/ -name "*nano*.rpm*"
./tmp/deploy/rpm/i586/nano-dbg-2.2.6-r0.i586.rpm
./tmp/deploy/rpm/i586/nano-dev-2.2.6-r0.i586.rpm
I have recently worked on that hands-on hello world project. As far as I am concerned, I think that the source code in the book contains some bugs. Below there is a list of suggested fixes:
Inheriting native class
In fact, when you build with bitbake that you got from poky, it builds only for the target, unless you mention in your recipe that you are building for the host machine (native). You can do the latter by adding this line at the end of your recipe:
inherit native
Adding license information
It is worth mentioning that the variable LICENSE is important to be set in any recipe, otherwise bitbake rises an error. In our case, we try to build the version 2.2.6 of the nano editor, its current license is GPLv3, hence it should be mentioned as follow:
LICENSE = "GPLv3"
Using os.system calls
As the book states, you cannot dereference metadata directly from a python function. Which means it is mandatory to access metadata through the d dictionary. Bellow, there is a suggestion for the do_unpack python function, you can use its concept to code the next tasks (do_configure, do_compile):
python do_unpack() {
workdir = d.getVar("WORKDIR", True)
dl_dir = d.getVar("DL_DIR", True)
p = d.getVar("P", True)
tarball_name = os.path.join(dl_dir, p+".tar.gz")
bb.plain("Unpacking tarball")
os.system("tar -x -C " + workdir + " -f " + tarball_name)
bb.plain("tarball unpacked successfully")
}
Launching the nano editor
After successfully building your nano editor package, you can find your nano executable in the following directory in case you are using Ubuntu (arch x86_64):
./tmp/work/x86_64-linux/nano/2.2.6-r0/src/nano
Should you have any comments or questions, Don't hesitate !
I am new to buildroot and working to build Linaro with buildroot ..I have multiple fragment kernel config files and specified that in buildroot defconfig.
I have specified a custom kernel patches directory with BR2_LINUX_PATCH_DIR .
I dont have some of the config flags not set which are supposed to be there in the .config files..so i suspect that the Patches are applied successfully..so i tried giving a non existing location as Linux Patch dir and it does not give any error..
Is there anything other than giving value to BR2_LINUX_PATCH_DIR and what should be the format of the dir structure...in buildroot manual it says it should be
Package_name/patch name..For linux what should be the package name? It should be the same with which linux dir is created.for example for me it is linux-custom
Plz suggest and guide me in this.
Thanks in Advance
The option is named BR2_LINUX_KERNEL_PATCH, there is nothing named BR2_LINUX_PATCH_DIR. It applies all patches listed in this option (if those are files), or all files named *.patch if what's given in this option is a directory. See the code in linux/linux.mk:
define LINUX_APPLY_LOCAL_PATCHES
for p in $(filter-out ftp://% http://% https://%,$(LINUX_PATCHES)) ; do \
if test -d $$p ; then \
$(APPLY_PATCHES) $(#D) $$p \*.patch || exit 1 ; \
else \
$(APPLY_PATCHES) $(#D) `dirname $$p` `basename $$p` || exit 1; \
fi \
done
endef
Also, I would recommend that you watch the output of Buildroot: it shows everything it is doing, especially it lists the patches it applied. Look at the line >>> linux .... Patching, which is the marker for the beginning of the patching step of the linux package.
I'm trying to build a very simple PostgreSQL client in C over Cygwin.
Here's what I've done so far:
I've downloaded the PostgreSQL source code version 9.1.2 (to match the same version that is running on my server)
I've configured and compiled the source code from Cygwin. The compilation seemed to go smoothly.
From what I can tell, the header files are in:
/cygdrive/c/workspace/src/postgresql-9.1.2/src/interfaces/libpq, and
/cygdrive/c/workspace/src/postgresql-9.1.2/src/include
The libraries are in:
/cygdrive/c/workspace/src/postgresql-9.1.2/src/interfaces/libpq
From here, I compiled and linked the client program using the makefile below:
testlibpq: testlibpq.c
gcc -o testlibpq -I /cygdrive/c/workspace/src/postgresql-9.1.2/src/interfaces/libpq -I /cygdrive/c/workspace/src/postgresql-9.1.2/src/include -L /cygdrive/c/workspace/src/postgresql-9.1.2/src/interfaces/libpq testlibpq.c -Bstatic -lpq
The compilation and the linking succeeded without errors or warnings.
However, when I try to run the program, I get the following error:
$ ./testlibpq
/cygdrive/c/Users/dleclair/Dropbox/denis/src/testlibpq/testlibpq.exe: error while loading shared libraries: cygpq.dll: cannot open shared object file: No such file or directory
I haven't figured out how to fix this. Any pointers would be greatly appreciated.
Oh, one more thing, I found the folder that cygpq.dll was sitting in and set my LD_LIBRARY_PATH to point to it but it still gave me the same result.
dleclair#dleclair-win7l ~/Dropbox/denis/src/testlibpq
$ ls /cygdrive/c/workspace/src/postgresql-9.1.2/src/interfaces/libpq
bcc32.mak encnames.o fe-connect.o fe-misc.o fe-protocol3.o ip.o libpq-events.c md5.c pgstrcasecmp.c pqsignal.c thread.o
blibpqdll.def exports.txt fe-exec.c fe-print.c fe-secure.c libpq.a libpq-events.h md5.o pgstrcasecmp.o pqsignal.h wchar.c
chklocale.c fe-auth.c fe-exec.o fe-print.o fe-secure.o libpq.rc.in libpq-events.o nls.mk po pqsignal.o wchar.o
chklocale.o fe-auth.h fe-lobj.c fe-protocol2.c inet_net_ntop.c libpqddll.def libpq-fe.h noblock.c pqexpbuffer.c pthread-win32.c win32.c
cygpq.dll fe-auth.o fe-lobj.o fe-protocol2.o inet_net_ntop.o libpq-dist.rc libpq-int.h noblock.o pqexpbuffer.h README win32.h
encnames.c fe-connect.c fe-misc.c fe-protocol3.c ip.c libpqdll.def Makefile pg_service.conf.sample pqexpbuffer.o thread.c win32.mak
dleclair#dleclair-win7l ~/Dropbox/denis/src/testlibpq
$ echo $LD_LIBRARY_PATH
/cygdrive/c/workspace/src/postgresql-9.1.2/src/interfaces/libpq
dleclair#dleclair-win7l ~/Dropbox/denis/src/testlibpq
Normally on unix/linux systems after building the source a make install is done which copies the headers to standard locations like /usr/local/include and /usr/local/lib. You may have to do that on cygwin to to get the DLL in the search path.
Or you can just locate the DLL yourself and put it on the search path or in the same folder as your executable.