Eclipse Kepler doesn't allow me to install plugins - eclipse

Just last week I installed egit with the plugin manager in eclipse (K). Now, I wanted to install ObjectAid. Only, none of my repositories (even the standard ones) are able to connect.
"Could not find... url"
I already went to preferences->install/update-> reloaded the urls, but then I get an error as well:
Unable to read repository at http://download.eclipse.org/tools/cdt/releases/kepler/content.xml.
Unable to read repository at http://download.eclipse.org/tools/cdt/releases/kepler/content.xml.
Failure initializing default SSL context
I also looked at the network settings, changed "native" to "direct", to no avail.
I know I can just download the plugin and install it manually, but that is cumbersome, I would like the network install to work.
Could it be some sort of "locked" file somewhere?
Update
My git push is also not working (local commit works fine). This is probably related. Strange that the internal browser works though.
Error log
!MESSAGE Provisioning exception
!STACK 1
org.eclipse.equinox.p2.core.ProvisionException: Unable to read repository at http://archive.eclipse.org/tools/cdt/releases/kepler/content.xml.
at org.eclipse.equinox.internal.p2.repository.CacheManager.createCache(CacheManager.java:192)
at org.eclipse.equinox.internal.p2.metadata.repository.SimpleMetadataRepositoryFactory.getLocalFile(SimpleMetadataRepositoryFactory.java:66)
at org.eclipse.equinox.internal.p2.metadata.repository.SimpleMetadataRepositoryFactory.load(SimpleMetadataRepositoryFactory.java:88)
at org.eclipse.equinox.internal.p2.metadata.repository.MetadataRepositoryManager.factoryLoad(MetadataRepositoryManager.java:57)
at org.eclipse.equinox.internal.p2.repository.helpers.AbstractRepositoryManager.loadRepository(AbstractRepositoryManager.java:768)
at org.eclipse.equinox.internal.p2.repository.helpers.AbstractRepositoryManager.loadRepository(AbstractRepositoryManager.java:668)
at org.eclipse.equinox.internal.p2.metadata.repository.MetadataRepositoryManager.loadRepository(MetadataRepositoryManager.java:96)
at org.eclipse.equinox.internal.p2.metadata.repository.MetadataRepositoryManager.loadRepository(MetadataRepositoryManager.java:92)
at org.eclipse.equinox.p2.ui.LoadMetadataRepositoryJob.doLoad(LoadMetadataRepositoryJob.java:117)
at org.eclipse.equinox.p2.ui.LoadMetadataRepositoryJob.runModal(LoadMetadataRepositoryJob.java:102)
at org.eclipse.equinox.internal.p2.ui.sdk.PreloadingRepositoryHandler$2.runModal(PreloadingRepositoryHandler.java:83)
at org.eclipse.equinox.p2.operations.ProvisioningJob.run(ProvisioningJob.java:177)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
Caused by: java.lang.IllegalStateException: Failure initializing default SSL context
at org.apache.http.conn.ssl.SSLSocketFactory.createDefaultSSLContext(SSLSocketFactory.java:211)
at org.apache.http.conn.ssl.SSLSocketFactory.<init>(SSLSocketFactory.java:333)
at org.apache.http.conn.ssl.SSLSocketFactory.getSocketFactory(SSLSocketFactory.java:165)
at org.apache.http.impl.conn.SchemeRegistryFactory.createDefault(SchemeRegistryFactory.java:45)
at org.apache.http.impl.client.AbstractHttpClient.createClientConnectionManager(AbstractHttpClient.java:294)
at org.apache.http.impl.client.AbstractHttpClient.getConnectionManager(AbstractHttpClient.java:445)
at org.apache.http.impl.client.AbstractHttpClient.createHttpContext(AbstractHttpClient.java:274)
at org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:797)
at org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:754)
at org.eclipse.ecf.provider.filetransfer.httpclient4.HttpClientFileSystemBrowser.runRequest(HttpClientFileSystemBrowser.java:263)
at org.eclipse.ecf.provider.filetransfer.browse.AbstractFileSystemBrowser$DirectoryJob.run(AbstractFileSystemBrowser.java:69)
... 1 more
Caused by: java.security.KeyStoreException: problem accessing trust storejava.io.IOException: Invalid keystore format
at sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:75)
at javax.net.ssl.TrustManagerFactory.init(TrustManagerFactory.java:250)
at org.apache.http.conn.ssl.SSLSocketFactory.createSSLContext(SSLSocketFactory.java:190)
at org.apache.http.conn.ssl.SSLSocketFactory.createDefaultSSLContext(SSLSocketFactory.java:209)
... 11 more
!SUBENTRY 1 org.eclipse.equinox.p2.transport.ecf 4 1002 2013-10-10 10:31:15.936
!MESSAGE Unable to read repository at http://archive.eclipse.org/tools/cdt/releases/kepler/content.xml.
!STACK 0
java.lang.IllegalStateException: Failure initializing default SSL context
at org.apache.http.conn.ssl.SSLSocketFactory.createDefaultSSLContext(SSLSocketFactory.java:211)
at org.apache.http.conn.ssl.SSLSocketFactory.<init>(SSLSocketFactory.java:333)
at org.apache.http.conn.ssl.SSLSocketFactory.getSocketFactory(SSLSocketFactory.java:165)
at org.apache.http.impl.conn.SchemeRegistryFactory.createDefault(SchemeRegistryFactory.java:45)
at org.apache.http.impl.client.AbstractHttpClient.createClientConnectionManager(AbstractHttpClient.java:294)
at org.apache.http.impl.client.AbstractHttpClient.getConnectionManager(AbstractHttpClient.java:445)
at org.apache.http.impl.client.AbstractHttpClient.createHttpContext(AbstractHttpClient.java:274)
at org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:797)
at org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:754)
at org.eclipse.ecf.provider.filetransfer.httpclient4.HttpClientFileSystemBrowser.runRequest(HttpClientFileSystemBrowser.java:263)
at org.eclipse.ecf.provider.filetransfer.browse.AbstractFileSystemBrowser$DirectoryJob.run(AbstractFileSystemBrowser.java:69)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
Caused by: java.security.KeyStoreException: problem accessing trust storejava.io.IOException: Invalid keystore format
at sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:75)
at javax.net.ssl.TrustManagerFactory.init(TrustManagerFactory.java:250)
at org.apache.http.conn.ssl.SSLSocketFactory.createSSLContext(SSLSocketFactory.java:190)
at org.apache.http.conn.ssl.SSLSocketFactory.createDefaultSSLContext(SSLSocketFactory.java:209)
... 11 more
!ENTRY org.eclipse.equinox.p2.ui 4 0 2013-10-10 10:31:22.730
!MESSAGE Unable to read repository at http://download.eclipse.org/releases/kepler/content.xml.
!STACK 1
org.eclipse.equinox.p2.core.ProvisionException: Unable to read repository at http://download.eclipse.org/releases/kepler/content.xml.
at org.eclipse.equinox.internal.p2.repository.CacheManager.createCache(CacheManager.java:192)
at org.eclipse.equinox.internal.p2.metadata.repository.SimpleMetadataRepositoryFactory.getLocalFile(SimpleMetadataRepositoryFactory.java:66)
at org.eclipse.equinox.internal.p2.metadata.repository.SimpleMetadataRepositoryFactory.load(SimpleMetadataRepositoryFactory.java:88)
at org.eclipse.equinox.internal.p2.metadata.repository.MetadataRepositoryManager.factoryLoad(MetadataRepositoryManager.java:57)
at org.eclipse.equinox.internal.p2.repository.helpers.AbstractRepositoryManager.loadRepository(AbstractRepositoryManager.java:768)
at org.eclipse.equinox.internal.p2.repository.helpers.AbstractRepositoryManager.loadRepository(AbstractRepositoryManager.java:668)
at org.eclipse.equinox.internal.p2.metadata.repository.MetadataRepositoryManager.loadRepository(MetadataRepositoryManager.java:96)
at org.eclipse.equinox.internal.p2.metadata.repository.MetadataRepositoryManager.loadRepository(MetadataRepositoryManager.java:92)
at org.eclipse.equinox.p2.ui.ProvisioningUI.loadMetadataRepository(ProvisioningUI.java:439)
at org.eclipse.equinox.internal.p2.ui.model.MetadataRepositoryElement.getMetadataRepository(MetadataRepositoryElement.java:120)
at org.eclipse.equinox.internal.p2.ui.model.MetadataRepositoryElement.fetchChildren(MetadataRepositoryElement.java:70)
at org.eclipse.equinox.internal.p2.ui.model.RemoteQueriedElement.fetchDeferredChildren(RemoteQueriedElement.java:34)
at org.eclipse.ui.progress.DeferredTreeContentManager$1.run(DeferredTreeContentManager.java:235)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
Caused by: java.lang.IllegalStateException: Failure initializing default SSL context
at org.apache.http.conn.ssl.SSLSocketFactory.createDefaultSSLContext(SSLSocketFactory.java:211)
at org.apache.http.conn.ssl.SSLSocketFactory.<init>(SSLSocketFactory.java:333)
at org.apache.http.conn.ssl.SSLSocketFactory.getSocketFactory(SSLSocketFactory.java:165)
at org.apache.http.impl.conn.SchemeRegistryFactory.createDefault(SchemeRegistryFactory.java:45)
at org.apache.http.impl.client.AbstractHttpClient.createClientConnectionManager(AbstractHttpClient.java:294)
at org.apache.http.impl.client.AbstractHttpClient.getConnectionManager(AbstractHttpClient.java:445)
at org.apache.http.impl.client.AbstractHttpClient.createHttpContext(AbstractHttpClient.java:274)
at org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:797)
at org.apache.http.impl.client.AbstractHttpClient.execute(AbstractHttpClient.java:754)
at org.eclipse.ecf.provider.filetransfer.httpclient4.HttpClientFileSystemBrowser.runRequest(HttpClientFileSystemBrowser.java:263)
at org.eclipse.ecf.provider.filetransfer.browse.AbstractFileSystemBrowser$DirectoryJob.run(AbstractFileSystemBrowser.java:69)
... 1 more
Caused by: java.security.KeyStoreException: problem accessing trust storejava.io.IOException: Invalid keystore format
at sun.security.ssl.TrustManagerFactoryImpl.engineInit(TrustManagerFactoryImpl.java:75)
at javax.net.ssl.TrustManagerFactory.init(TrustManagerFactory.java:250)
at org.apache.http.conn.ssl.SSLSocketFactory.createSSLContext(SSLSocketFactory.java:190)
at org.apache.http.conn.ssl.SSLSocketFactory.createDefaultSSLContext(SSLSocketFactory.java:209)
... 11 more
!SUBENTRY 1 org.eclipse.equinox.p2.transport.ecf 4 1002 2013-10-10 10:31:22.730
!MESSAGE Unable to read repository at http://download.eclipse.org/releases/kepler/content.xml.
!STACK 0
Could there be a problem with the fact that I also have eclipse juno on this computer? I run it with a different workspace though.

Fantastic! I simply appended the port number 80 to the URL and it works for me!
http://download.eclipse.org:80/releases/kepler

Possible Solutions:
Try starting eclipse with the following argument and add it to eclipse.ini :
-vmargs -Djava.net.preferIPv4Stack=true
Check the port and proxy settings under
Window -> Preferences -> General -> Network Connections
You need to make sure that whatever outgoing port(s) your organization allows, you're using one of those, and enter the settings for any proxy your organization requires. Change the port to a usable port like 80

It is a bug in open jdk 1.7 from the suse repos. So I installed the jdk 1.7 rpm which is offered by Oracle. Be sure that your eclipse points to the right java version
(Window >> Preferences >> Java >> Installed JRE).

I had the same symptoms, on Fedora. Installing plugins worked once, then every source failed on the next attempt.
I saw on a forum post to try adding -clean to eclipse on the command line. Starting with eclipse -clean put me into a mode where I could not install any software, but after a quit and starting eclipse normally, I could install plugins again without any complaints.
Looking around, this flag clears out a bunch internal caches in eclipse. As this was only my second time running eclipse, I wonder if I just had bad luck or if it's typically this shaky.

My antivirus firewall was causing this problem.
After I disabled the firewall of my antivirus, I am able to fetch child of http://download.eclipse.org/releases/mars

Related

Cannot download bundle at http://repo1.maven.org/maven2/....oss-catalog-1.6.jar: HTTP Server 'Not Implemented'

Recently, I re-imaged our machines from Windows 7 to Windows 10.
Ever since then, on opening Eclipse, I've been unable to open the M2E Catalog. This means I can't install Maven's the Tycho Project Configurator. As this is an organization, it's pretty certain there may be proxy servers. However, I've not been able to obtain its details. Essentially, installing the Tycho Project Configurator is what I'm trying to do.
Steps to reproduce:
Eclipse Oxygen -> Quick Access -> "m2e"
Error on Eclipse GUI: "Discovery completed without finding any
extensions. Please check your network connection and try again".
Eclipse logs:
!ENTRY org.eclipse.equinox.p2.discovery 4 0 2020-02-17 10:48:23.685
!MESSAGE Cannot download bundle at
http://repo1.maven.org/maven2/.m2e/discovery-catalog/org.eclipse.m2e.discovery.oss-catalog-1.6.jar:
HTTP Server 'Not Implemented':
http://repo1.maven.org/maven2/.m2e/discovery-catalog/org.eclipse.m2e.discovery.oss-catalog-1.6.jar
!STACK 1 org.eclipse.equinox.p2.core.ProvisionException: HTTP Server
'Not Implemented':
http://repo1.maven.org/maven2/.m2e/discovery-catalog/org.eclipse.m2e.discovery.oss-catalog-1.6.jar
at
org.eclipse.equinox.internal.p2.discovery.compatibility.util.CacheManager.createCache(CacheManager.java:109)
at
org.eclipse.equinox.internal.p2.discovery.compatibility.util.TransportUtil.downloadResource(TransportUtil.java:56)
at
org.eclipse.equinox.internal.p2.discovery.compatibility.RemoteBundleDiscoveryStrategy$DownloadBundleJob.call(RemoteBundleDiscoveryStrategy.java:202)
at
org.eclipse.equinox.internal.p2.discovery.compatibility.RemoteBundleDiscoveryStrategy$DownloadBundleJob.call(RemoteBundleDiscoveryStrategy.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266) at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748) Caused by:
org.eclipse.ecf.filetransfer.BrowseFileTransferException:
HttpComponents connection error response code 501. at
org.eclipse.ecf.provider.filetransfer.httpclient4.HttpClientFileSystemBrowser.runRequest(HttpClientFileSystemBrowser.java:293)
at
org.eclipse.ecf.provider.filetransfer.browse.AbstractFileSystemBrowser$DirectoryJob.run(AbstractFileSystemBrowser.java:69)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:56)
Java version: 1.8.0_181
Any suggestions?
Try a newer release of Eclipse. Maven Central only provides downloads by https, now.

Installing PyDev IDE for Eclipse 5.4.0 on Eclipse Mars 4.5.2 throws error "Profile id _SELF_ is not registered"

Problems occurred while performing provisioning operation: Profile id SELF is not registered.
Profile id SELF is not registered.
Please share your thought on this Thanks
Part of Error Log:
!ENTRY org.eclipse.epp.logging.aeri.core 2 1 2017-01-07 20:55:23.822
!MESSAGE AERI failed with an error. Please report this error: null ; version: 1.100.0.v20160211-1103
!STACK 0
java.lang.NullPointerException
from run go to the %userprofile% --> C:\users\
go to .p2 folder --- delete all folders/files
run the eclipse ..... close the eclipse ... and start again...
In my case, it was sufficient to delete the *.profile.gz files in
C:\Users\%username%\.p2\org.eclipse.equinox.p2.engine\profileRegistry\<your profile folder>\
(or at least move the files to somewhere else) and restart Eclipse.
I didn't figure out why there seems to be different profile IDs. Maybe because I installed my Eclipse with Oomph, and that was generating some other profile which caused the problem. Just a guess.

java.lang.NumberFormatException on Eclipse start

When I start Eclipse, I sometimes get the following error:
!SESSION Wed Dec 16 09:31:26 EST 2015 ------------------------------------------
!ENTRY org.eclipse.equinox.launcher 4 0 2015-12-16 09:31:26.409
!MESSAGE Exception launching the Eclipse Platform:
!STACK
java.lang.NumberFormatException: null
at java.lang.Long.parseLong(Long.java:404)
at java.lang.Long.parseLong(Long.java:483)
at org.eclipse.equinox.launcher.Main.getLastKnownConfigIniBaseTimestamp(Main.java:1966)
at org.eclipse.equinox.launcher.Main.processConfiguration(Main.java:1905)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:575)
at org.eclipse.equinox.launcher.Main.run(Main.java:1515)
A similar error with a different call stack and cause is described here.
The problem is that my Linux machine was forgetting its username database (due to some obscure Winbind problem). As a result, Eclipse can't look up my user information and (presumably) can't find my home directory to load and parse its configuration.
(A symptom is that, when run under strace, I could see that Eclipse was looking under ? for its .eclipse configuration directory.)
Fixing the username database so that Eclipse can find my user account fixed the problem. (This has also been logged on Eclipse's Bugzilla.)

Eclipse - Tomcat 7 - java.lang.IndexOutOfBoundsException on publish

I have a Webproject using maven and when I try to deploy it to Tomcat 7, I get the following message:
Publishing failed
Could not publish to the server.
java.lang.IndexOutOfBoundsException
Could not publish server configuration: myworkspace\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\conf\server.xml (The system cannot find the path specified.).
myworkspace\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\conf\server.xml (The system cannot find the path specified.)
When I look at the log file of tomcat in 'myworkpace.metadata.logs' I see the following:
!ENTRY org.eclipse.wst.server.core 4 0 2013-11-22 13:36:40.128
!MESSAGE Publishing failed
!SUBENTRY 1 org.eclipse.wst.server.core 4 0 2013-11-22 13:36:40.128
!MESSAGE Could not publish to the server.
!STACK 0
java.lang.IndexOutOfBoundsException
at java.io.BufferedInputStream.read(BufferedInputStream.java:338)
at org.eclipse.jdt.internal.compiler.util.Util.getInputStreamAsByteArray(Util.java:498)
at org.eclipse.jdt.core.ToolFactory.createDefaultClassFileReader(ToolFactory.java:269)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.isEJBArchive(JavaEEArchiveUtilities.java:900)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.refineForJavaEE(JavaEEArchiveUtilities.java:606)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.openArchive(JavaEEArchiveUtilities.java:370)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.openBinaryArchive(JavaEEArchiveUtilities.java:290)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper$ArchiveCache.openArchive(JavaEEBinaryComponentHelper.java:612)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.openArchive(JavaEEBinaryComponentHelper.java:470)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getUniqueArchive(JavaEEBinaryComponentHelper.java:422)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getArchive(JavaEEBinaryComponentHelper.java:415)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getJavaEEQuickPeek(JavaEEBinaryComponentHelper.java:98)
at org.eclipse.jst.j2ee.project.JavaEEProjectUtilities.getJ2EEComponentType(JavaEEProjectUtilities.java:273)
at org.eclipse.jst.j2ee.internal.common.exportmodel.JEEHeirarchyExportParticipant.isChildModule(JEEHeirarchyExportParticipant.java:42)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.isChildModule(FlatVirtualComponent.java:367)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.addUsedReferences(FlatVirtualComponent.java:305)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.treeWalk(FlatVirtualComponent.java:235)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.cacheResources(FlatVirtualComponent.java:188)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.fetchResources(FlatVirtualComponent.java:118)
at org.eclipse.wst.web.internal.deployables.FlatComponentDeployable.members(FlatComponentDeployable.java:227)
at org.eclipse.jst.j2ee.internal.deployables.J2EEFlexProjDeployable.members(J2EEFlexProjDeployable.java:267)
at org.eclipse.wst.server.core.internal.ModulePublishInfo.getDelta(ModulePublishInfo.java:407)
at org.eclipse.wst.server.core.internal.ServerPublishInfo.getDelta(ServerPublishInfo.java:366)
at org.eclipse.wst.server.core.internal.Server.getPublishedResourceDelta(Server.java:1574)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.getPublishedResourceDelta(ServerBehaviourDelegate.java:698)
at org.eclipse.jst.server.tomcat.core.internal.TomcatServerBehaviour.getPublishedResourceDelta(TomcatServerBehaviour.java:958)
at org.eclipse.jst.server.tomcat.core.internal.PublishOperation2.publishDir(PublishOperation2.java:137)
at org.eclipse.jst.server.tomcat.core.internal.PublishOperation2.execute(PublishOperation2.java:82)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.performTasks(ServerBehaviourDelegate.java:1335)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.publish(ServerBehaviourDelegate.java:954)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.publish(ServerBehaviourDelegate.java:774)
at org.eclipse.wst.server.core.internal.Server.publishImpl(Server.java:3153)
at org.eclipse.wst.server.core.internal.Server$PublishJob.run(Server.java:345)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
!SUBENTRY 1 org.eclipse.jst.server.tomcat.core 4 0 2013-11-22 13:36:40.128
!MESSAGE Could not publish server configuration: C:\IBM\workspace\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\conf\server.xml (The system cannot find the path specified.).
!STACK 0
java.io.FileNotFoundException: myworkspace\.metadata\.plugins\org.eclipse.wst.server.core\tmp0\conf\server.xml (The system cannot find the path specified.)
at java.io.FileInputStream.open(Native Method)
at java.io.FileInputStream.<init>(FileInputStream.java:149)
at org.eclipse.jst.server.tomcat.core.internal.TomcatVersionHelper.publishCatalinaContextConfig(TomcatVersionHelper.java:499)
at org.eclipse.jst.server.tomcat.core.internal.Tomcat70Configuration.publishContextConfig(Tomcat70Configuration.java:674)
at org.eclipse.jst.server.tomcat.core.internal.TomcatServerBehaviour.publishFinish(TomcatServerBehaviour.java:462)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.publish(ServerBehaviourDelegate.java:1011)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.publish(ServerBehaviourDelegate.java:774)
at org.eclipse.wst.server.core.internal.Server.publishImpl(Server.java:3153)
at org.eclipse.wst.server.core.internal.Server$PublishJob.run(Server.java:345)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
If I try to publish again, I only get the first error:
Could not publish to the server.
java.lang.IndexOutOfBoundsException
and in the logs:
!ENTRY org.eclipse.wst.server.core 4 0 2013-11-22 13:41:18.645
!MESSAGE Could not publish to the server.
!STACK 0
java.lang.IndexOutOfBoundsException
at java.io.BufferedInputStream.read(BufferedInputStream.java:338)
at org.eclipse.jdt.internal.compiler.util.Util.getInputStreamAsByteArray(Util.java:498)
at org.eclipse.jdt.core.ToolFactory.createDefaultClassFileReader(ToolFactory.java:269)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.isEJBArchive(JavaEEArchiveUtilities.java:900)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.refineForJavaEE(JavaEEArchiveUtilities.java:606)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.openArchive(JavaEEArchiveUtilities.java:370)
at org.eclipse.jst.j2ee.internal.archive.JavaEEArchiveUtilities.openBinaryArchive(JavaEEArchiveUtilities.java:290)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper$ArchiveCache.openArchive(JavaEEBinaryComponentHelper.java:612)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.openArchive(JavaEEBinaryComponentHelper.java:470)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getUniqueArchive(JavaEEBinaryComponentHelper.java:422)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getArchive(JavaEEBinaryComponentHelper.java:415)
at org.eclipse.jst.j2ee.internal.componentcore.JavaEEBinaryComponentHelper.getJavaEEQuickPeek(JavaEEBinaryComponentHelper.java:98)
at org.eclipse.jst.j2ee.project.JavaEEProjectUtilities.getJ2EEComponentType(JavaEEProjectUtilities.java:273)
at org.eclipse.jst.j2ee.internal.common.exportmodel.JEEHeirarchyExportParticipant.isChildModule(JEEHeirarchyExportParticipant.java:42)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.isChildModule(FlatVirtualComponent.java:367)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.addUsedReferences(FlatVirtualComponent.java:305)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.treeWalk(FlatVirtualComponent.java:235)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.cacheResources(FlatVirtualComponent.java:188)
at org.eclipse.wst.common.componentcore.internal.flat.FlatVirtualComponent.fetchResources(FlatVirtualComponent.java:118)
at org.eclipse.wst.web.internal.deployables.FlatComponentDeployable.members(FlatComponentDeployable.java:227)
at org.eclipse.jst.j2ee.internal.deployables.J2EEFlexProjDeployable.members(J2EEFlexProjDeployable.java:267)
at org.eclipse.wst.server.core.internal.ModulePublishInfo.fillCache(ModulePublishInfo.java:314)
at org.eclipse.wst.server.core.internal.ModulePublishInfo.getDelta(ModulePublishInfo.java:396)
at org.eclipse.wst.server.core.internal.ServerPublishInfo.getDelta(ServerPublishInfo.java:366)
at org.eclipse.wst.server.core.internal.Server.getPublishedResourceDelta(Server.java:1574)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.getPublishedResourceDelta(ServerBehaviourDelegate.java:698)
at org.eclipse.jst.server.tomcat.core.internal.TomcatServerBehaviour.getPublishedResourceDelta(TomcatServerBehaviour.java:958)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.computeDelta(ServerBehaviourDelegate.java:874)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.publish(ServerBehaviourDelegate.java:909)
at org.eclipse.wst.server.core.model.ServerBehaviourDelegate.publish(ServerBehaviourDelegate.java:774)
at org.eclipse.wst.server.core.internal.Server.publishImpl(Server.java:3153)
at org.eclipse.wst.server.core.internal.Server$PublishJob.run(Server.java:345)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
I tried starting from a clean installation (clean eclipse, clean tomcat and clean workspace), imported the code from CVS, but still the same problem
Anyone got any ideas as to what may be incorrect (or how I could locate the problem)?
EDIT
When I build the project into a WAR-file on another computer and deploy this war file directly to tomcat via the management console, it works.
My guess is that the build must be different somehow...
EDIT2
I removed the complete maven repository. Afer this, I was able to build the project correctly and run it on Tomcat using the exported war-file.
However, I still get the IndexOutOfBoundsException when I try to publish directly from eclipse
EDIT3
After removing the Maven repository a few times, I was able to build and run the project. It seems Maven sometimes gets corrupted.
If others should have this problem, delete the complete Maven directory and run a maven update on each of the projects in the workspace.
The maven repository can be corrupt. It is best to remove the complete repository and update all projects in the workspace.
Although this question has been answered - it was a problem with a corrupt repository, it is possible to determine which jar in your repository is corrupt by deploying the war to Tomcat outside of eclipse.
In my situation Tomcat then reported in its log where the problem lay (guava-13.0.1.jar):
SEVERE: Unable to process Jar entry [com/google/common/collect/package-info.class] from Jar
[jar:file:/C:/Java/tomcat/apache-tomcat-7.0.42/webapps/myapp/WEB-INF/lib/guava-13.0.1.jar!/] for annotations
java.util.zip.ZipException: invalid LOC header (bad signature)
Most probably some jar of your local maven repo that are included in your .war as dependency are corrupted.
As jtsnr suggested, you can deploy your .war outside Eclipse to discover which jar is corrupted. But there is a quicker solution. Just locate the /target dir of your maven project (or just unzip the .war) and locate inside the *.jar files (should be under WEB-INF/lib).
Now, with a simple zip tool (e.g.: 7-Zip) select all and extract. You will receive a prompt for each corrupted file you have: after this, locate the file in your Maven repo and delete the entire version for that file.
In this way, if you have a big repo, you gain a lot of time avoiding to re-download the entire jar ecosystem :)
HTH..
Lets try once the way it is mentioned below. so please delete the previous installation.
Step 1
Create a new Server run time
(Window -> Preferences -> Server -> Runtime Environments).
Step 2
Add Server to Eclipse
(Window -> Show View -> Servers) add a new server configuration (right-click and select New -> Server) but DO NOT ADD ANY PROJECTS TO IT.
Step 3
Open Server Overview page
Double click the new server configuration to bring up the Server Overview page where we set port and time out for the Server.
Step 4
Under Server Locations select Use Tomcat installation. Save.
You should be able to start your server now. Now add your project to the server and you're ready to go.

Cannot run Eclipse

This morning, I'm not able do run Eclipse Indigo whereas yesterday it was working.
I receive this message :
An error has occured. See the log file E:\workspaces\sim.metadata.log
And my .log file displays :
!STACK 0
!MESSAGE An error occurred while automatically activating bundle org.eclipse.core.resources (103).
...
Caused by: java.lang.ClassFormatError: Illegal constant pool index 7436 for method signature in class file org/eclipse/core/internal/resources/MarkerManager
...
!STACK 1
java.lang.NoClassDefFoundError: org/eclipse/core/resources/IContainer
...
Caused by: org.eclipse.core.runtime.internal.adaptor.EclipseLazyStarter$TerminatingClassNotFoundException: An error occurred while automatically activating bundle org.eclipse.core.resources (103).
...
Caused by: org.osgi.framework.BundleException: Exception in org.eclipse.core.resources.ResourcesPlugin.start() of bundle org.eclipse.core.resources.
I ran Eclipse with the clean argument but it's the same.
Thanks for any help
It looks like your eclipse crashed sometime before and is unable to restore the workspace.
You can delete .metadata/.plugins/org.eclipse.core.resources/.snap .
Or
Try using a new workspace. Change the settings in \configuration.settings\org.eclipse.ui.ide.prefs and set SHOW_WORKSPACE_SELECTION_DIALOG to true
After that import all your projects to your workspace.
Try reinstalling Eclipse. The message regarding an illegal constant pool index sounds like a broken .class file. Your settings and workspace should remain intact, but you may need to re-install your plugins (if any).
I suppose you still have your workspace intact.The best and fastest option would be to reinstall eclipse and replace the new workspace with the older one.