Mysql failed to start - daemon

Question

I have installed mysql-5.6.14 from source pack
trying to start:
vaio1#vaio1-VPCEA3S1E:mysqld
2013-11-17 13:22:18 0 [Warning] Using unique option prefix key_buffer instead of key_buffer_size is deprecated and will be removed in a future release. Please use the full name instead.
2013-11-17 13:22:18 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2013-11-17 13:22:18 1777 [ERROR] Can't find messagefile '/usr/share/mysql/errmsg.sys'
2013-11-17 13:22:18 1777 [Warning] One can only use the --user switch if running as root
2013-11-17 13:22:18 1777 [Warning] Buffered warning: Changed limits: max_open_files: 1024 (requested 5000)
2013-11-17 13:22:18 1777 [Warning] Buffered warning: Changed limits: table_cache: 431 (requested 2000)
2013-11-17 13:22:18 1777 [Warning] Using unique option prefix myisam-recover instead of myisam-recover-options is deprecated and will be removed in a future release. Please use the full name instead.
2013-11-17 13:22:18 1777 [Note] Plugin 'FEDERATED' is disabled.mysqld: Unknown error 1146
2013-11-17 13:22:18 1777 [ERROR] Can't open the mysql.plugin table. Please run mysql_upgrade to create it.
2013-11-17 13:22:18 1777 [Note] InnoDB: The InnoDB memory heap is disabled
2013-11-17 13:22:18 1777 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2013-11-17 13:22:18 1777 [Note] InnoDB: Compressed tables use zlib 1.2.3
2013-11-17 13:22:18 1777 [Note] InnoDB: Using CPU crc32 instructions
2013-11-17 13:22:18 1777 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2013-11-17 13:22:18 1777 [Note] InnoDB: Completed initialization of buffer pool
2013-11-17 13:22:18 1777 [Note] InnoDB: Highest supported file format is Barracuda.
2013-11-17 13:22:19 1777 [Note] InnoDB: 128 rollback segment(s) are active.
2013-11-17 13:22:19 1777 [Note] InnoDB: Waiting for purge to start
2013-11-17 13:22:19 1777 [Note] InnoDB: 5.6.14 started; log sequence number 1600677
2013-11-17 13:22:19 1777 [ERROR] Aborting

Answer 1

Open the terminal and run this command for starting mysql service:
$ sudo mysqld_safe --skip-grant-tables
while mysql service is running, then open other terminal and run:
$ sudo mysql_upgrade -u root -p

Answer 2

mysqld reads this standard configuration file and can not read the 5.5 message file in
5.6, leading to this error.
Solutions :
1. pass your configuration file to mysql_install_db
./scripts/mysql_install_db --defaults-file=my.cnf
2. use --no-defaults, not to read other configuration files
./scripts/mysql_install_db --no-defaults --basedir=/home/praveen/mysql-5.6.10-linux-x86_65
--datadir=/home/praveen/data

Answer 3

Maybe, you got the MySQL 5.6 binary but my.cnf and data file is older version.
have you read MySQL upgrade Manual?
main reason MySQL has dead is :
Unknown error 1146 2013-11-17 13:22:18 1777 [ERROR] Can't open the mysql.plugin table.
Please run mysql_upgrade to create it
see Manual how to use mysql_upgrade. most of error message is related to deprecated options.

Answer 4

I have compiled from the sourceforge zip :mysql-5.6.14
Trying to mysql_upgrade:
vaio1#vaio1-VPCEA3S1E:~/Téléchargements/mysql-5.6.14$ mysql_upgrade
Looking for 'mysql' as: mysql
Looking for 'mysqlcheck' as: mysqlcheck
FATAL ERROR: Upgrade failed
vaio1#vaio1-VPCEA3S1E:~/Téléchargements/mysql-5.6.14$ mysqlcheck
Variables (--variable-name=value)
and boolean options {FALSE|TRUE} Value (after reading options)
--------------------------------- ----------------------------------------
all-databases FALSE
all-in-1 FALSE
auto-repair FALSE
bind-address (No default value)
character-sets-dir (No default value)
compress FALSE
databases FALSE
debug-check FALSE
debug-info FALSE
default-character-set (No default value)
default-auth (No default value)
fast FALSE
fix-db-names FALSE
fix-table-names FALSE
force FALSE
extended FALSE
host (No default value)
write-binlog TRUE
plugin-dir (No default value)
port 0
quick FALSE
silent FALSE
skip-database (No default value)
socket (No default value)
ssl FALSE
ssl-ca (No default value)
ssl-capath (No default value)
ssl-cert (No default value)
ssl-cipher (No default value)
ssl-key (No default value)
ssl-crl (No default value)
ssl-crlpath (No default value)
ssl-verify-server-cert FALSE
use-frm FALSE
user (No default value)
I don't understand why
user (No default value)
In my file: /etc/mysql/my.cnf
user = mysql
vaio1#vaio1-VPCEA3S1E:~/Téléchargements/mysql-5.6.14$ mysqld_safe --skip-grant-tables
131118 10:10:04 mysqld_safe Logging to '/var/log/mysql/error.log'.
touch: impossible de faire un touch «/var/log/mysql/error.log»: Permission non accordée
chmod: impossible d'accéder à «/var/log/mysql/error.log»: Aucun fichier ou dossier de ce type ## No files or directory
131118 10:10:04 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
/usr/local/mysql/bin/mysqld_safe: 129: /usr/local/mysql/bin/mysqld_safe: cannot create /var/log/mysql/error.log: Permission denied
/usr/local/mysql/bin/mysqld_safe: 1: eval: cannot create /var/log/mysql/error.log: Permission denied
touch: impossible de faire un touch «/var/log/mysql/error.log»: Permission non accordée
chown: impossible d'accéder à «/var/log/mysql/error.log»: Aucun fichier ou dossier de ce type ## No files or directory
chmod: impossible d'accéder à «/var/log/mysql/error.log»: Aucun fichier ou dossier de ce type
131118 10:10:04 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended
/usr/local/mysql/bin/mysqld_safe: 129: /usr/local/mysql/bin/mysqld_safe: cannot create /var/log/mysql/error.log: Permission denied
...$ mysqlcheck --all-databases --check-upgrade --auto-repair
mysqlcheck: Got error: 2002: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) when trying to connect
Trying this: sudo chown -R mysql /var/lib/mysql
also .. chown..var/log/mysql/
.. change nothing
YES! maybe problem from default user;
sudo cmod 777 var/log/mysql/ ## just test lol
Trying mysqld
vaio1#vaio1-VPCEA3S1E:~/Téléchargements/mysql-5.6.14$ mysqld
2013-11-18 11:36:36 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2013-11-18 11:36:36 24679 [ERROR] Can't find messagefile '/usr/share/mysql/errmsg.sys'
2013-11-18 11:36:36 24679 [Warning] One can only use the --user switch if running as root
2013-11-18 11:36:36 24679 [ERROR] Can't find messagefile '/usr/share/mysql/errmsg.sys'
Coping errmsg.sys
sudo cp /usr/local/mysql/share/english/errmsg.sys /usr/share/errmsg.sys
sudo chown mysql /usr/share/errmsg.sys
Resolve /usr/share/mysql/errmsg.sys

Answer 5

Whatever the list of MySQL "ini" files are present in : "MySQL\MySQL Server 5.2\" folder, replace them from your frined.
I wasted so much time and still dont know the root cause of the problem.
Do check ".err" file present in "data" folder for errors if any.
Now start the service & Done.
Its just makes entry somewhere & u try to debug for the problem soluton, instead this was faster approach.

Answer 6

Just ran into the same issue as mentioned in this question and tried lot of solutions, at last I figured out what was wrong. The issue came with the server upgrading. Files from mysql-libs-5.1.73-5.el6_6.x86_64 replaced those in MySQL-server-5.6.15-1.el6.x86_64, so after reinstalling, the server comes back. Here is what I did for a furture reference.
$ rpm -qf /usr/share/mysql/english/errmsg.sys
MySQL-server-5.6.15-1.el6.x86_64
mysql-libs-5.1.73-5.el6_6.x86_64
$ rpm -e mysql-libs-5.1.73-5.el6_6.x86_64
$ rpm -ivh --replacepkgs MySQL-*