pg_dump from 9.1.7 to 9.1.11 - postgresql

I would like to import a table from another postgress database (9.1.7) to mine which is (9.1.11). I tried to import the dump but I get a bunch of syntax errors, I'm assuming there is some issue with the version mismatch?
Is there a better solution other than downgrading my postgress installation to match the desired input file?
This is the command I used to export the database on the 9.1.7 system:
pg_dump superdb -U tester -a -t guidedata > /tmp/guidedata.sql
This is the command I used to import the dump file guidedata.sql
psql linuxdb -U tester -h localhost < guidedata.sql
This is the top portion of the database dump file which I am attempting to import:
--
-- PostgreSQL database dump
--
SET statement_timeout = 0;
SET client_encoding = 'UTF8';
SET standard_conforming_strings = on;
SET check_function_bodies = false;
SET client_min_messages = warning;
SET search_path = public, pg_catalog;
--
-- Data for Name: epg; Type: TABLE DATA; Schema: public; Owner: spy
--
COPY epg (id, channel, sdate, stime, duration, stitle, ltitle, theme, sdesc, ldesc, mpaa, rating, stereo, surround, sap, closedcaptioned, animated, blackwhite, rerun, live, ismovie, nudity, language, violence, adulttheme, halfstars, field1) FROM stdin;
90056520 AMC 01092014 0100 270 Titanic Titanic 8,15 A woman falls for an artist aboard the ill-fated ship. Leonardo DiCaprio, Kate Winslet (1997) A society girl abandons her haughty fiance for a penniless artist on the ill-fated ship's maiden voyage. (3:15) MPAAPG13 TVPG f f f t f f t f t t t t t 8 f
90056521 AMC 01092014 0530 180 Love Actually Love Actually 23,15 Various people deal with relationships in London. Hugh Grant, Laura Linney (2003) A prime minister, an office worker, a pop star, a jilted writer, married couples and various others deal with relationships in London. (2:15) MPAAR TVPG f f t t f f t f t t t f t 6 f
90056522 AMC 01092014 0830 150 Four Four Weddings and a Funeral 23,15 An English charmer meets a lusty American. Hugh Grant, Andie MacDowell (1994) An English charmer and a lusty American make love over a course of surprising events. (1:56) MPAAR TV14 f f t t f f t f t f t f t 7 f
90056523 AMC 01092014 1100 30 Paid Prog. Paid Programming 0 Paid programming. Paid programming. f f f f f f t f f f f f f 0 f
90056524 AMC 01092014 1130 30 Williams Montel Williams 19 Living well with Montel and the effects of identity theft. Living well with Montel and the devastating effects of identity theft. f f f f f f t f f f f f f 0 f
90056525 AMC 01092014 1200 30 Cindy Crawford Cindy Crawford Reveals Secret to Ageless Beauty 19 Cindy Crawford's skin secret with Meaningful Beauty. Cindy Crawford's supermodel secret to youthful, radiant-looking skin with Meaningful Beauty. f f f f f f t f f f f f f 0 f
90056526 AMC 01092014 1230 30 More Sex More Sex, Less Stress 19 Androzene promotes male sexual health & nourishes the body. Androzene promotes male sexual health and nourishes the body. f f f f f f t f f f f f f 0 f
90056527 AMC 01092014 1300 30 WEN Hair Care WEN by Chaz Dean Revolutionary Hair Care System 19 WEN by Chaz Dean is revolutionary hair care. WEN by Chaz Dean is revolutionary hair care that cleans and conditions without many shampoo's harsh detergents or sulfates. Natural ingredients help make hair shinier, fuller, softer and more manageable! By trusted GuthyRenker. f f f f f f t f f f f f f 0 f
90056528 AMC 01092014 1330 30 Medicare Looking for a Medicare plan? Tune in now! 19 Watch and learn about Humana Medicare Advantage plans. Watch and learn about Humana Medicare Advantage plans. f f f f f f t f f f f f f 0 f
90056529 AMC 01092014 1400 5 Stooges The Three Stooges 6 The caveman boys meet cavewomen. Moe Howard, Larry Fine ''I'm a Monkey's Unc
Here is some of the error output I see on the console when attempting to import:
ERROR: syntax error at or near "Route"
LINE 1: Route 66 renovation gives Ron a change of heart. TVPG t f f...
^
ERROR: syntax error at or near "Ron"
LINE 1: Ron and Jason bring out the Pontiac GTO. TVPG t f f t f f t...
^
ERROR: syntax error at or near "repairing"
LINE 1: repairing the clutch and drive shaft on the 1995 BMW. TVPG ...
^
ERROR: syntax error at or near "classic"
LINE 1: classic Bucik;
Thanks

My guess - one system is linux/unix/mac and the other is Windows.
It's complaining about the first line of the block of data because there is a stray carriage-return (\r) character.
Solution: use the (recommended unless you have a good reason not to) "custom" format with -Fc or --format=custom on your dump command. That should sort it.

Related

VScode Exception occur: System.ArgumentOutOfRangeException

When I try to run any c++ program in vs code an exception occur and do not run the program
Oops, something went wrong. Please report this bug with the details below.
Report on GitHub: https://github.com/lzybkr/PSReadLine/issues/new
-----------------------------------------------------------------------
Last 101 Keys:
c d Space " c : \ U s e r s \ U S E R
\ D o c u m e n t s \ p r o g r a m m i n g \ " Space ; Space i f Space ( $ ?
) Space { Space g + + Space c o d e 2 . c p p Space - o Space c o d e 2 Space
} Space ; Space i f Space ( $ ? ) Space { Space . \ c o d e 2 Space } Enter
Exception:
System.ArgumentOutOfRangeException: The value must be greater than or equal to zero and less than the console's buffer size in that dimension.
Parameter name: left
Actual value was -1.
at System.Console.SetCursorPosition(Int32 left, Int32 top)
at Microsoft.PowerShell.Internal.VirtualTerminal.set_CursorLeft(Int32 value)
at Microsoft.PowerShell.PSConsoleReadLine.ReallyRender(RenderData renderData, String defaultColor)
at Microsoft.PowerShell.PSConsoleReadLine.ForceRender()
at Microsoft.PowerShell.PSConsoleReadLine.Insert(Char c)
at Microsoft.PowerShell.PSConsoleReadLine.SelfInsert(Nullable`1 key, Object arg)
at Microsoft.PowerShell.PSConsoleReadLine.ProcessOneKey(ConsoleKeyInfo key, Dictionary`2 dispatchTable, Boolean ignoreIfNoAction, Object arg)
at Microsoft.PowerShell.PSConsoleReadLine.InputLoop()
at Microsoft.PowerShell.PSConsoleReadLine.ReadLine(Runspace runspace, EngineIntrinsics engineIntrinsics)
-----------------------------------------------------------------------
By using manual command in terminal , I can run my c++ program.
I can find some issues in vscode github repository about this problem but can not understand any solution

Unicode letters with more than 1 alphabetic latin character?

I'm not really sure how to express it but I'm searching for unicode letters which are more than one visual latin letter.
I found this in Word so far:
DZ
Dz
dz
NJ
Lj
LJ
Nj
nj
Any others?
Here are some of the characters I've found. I'd first done this manually by looking at some probable blocks. However I've later written a Python script to do this automatically that you can find at the end of this answer
Digraphs
Two Glyphs
Digraph
Unicode Code Point
HTML
DZ, Dz, dz
DZ, Dz, dz
U+01F1 U+01F2 U+01F3
DZ Dz dz
DŽ, Dž, dž
DŽ, Dž, dž
U+01C4 U+01C5 U+01C6
DŽ Dž dž
IJ, ij
IJ, ij
U+0132 U+0133
IJ ij
LJ, Lj, lj
LJ, Lj, lj
U+01C7 U+01C8 U+01C9
LJ Lj lj
NJ, Nj, nj
NJ, Nj, nj
U+01CA U+01CB U+01CC
NJ Nj nj
Ligatures
Non-ligature
Ligature
Unicode
HTML
AA, aa
Ꜳ, ꜳ
U+A732, U+A733
Ꜳ ꜳ
AE, ae
Æ, æ
U+00C6, U+00E6
Æ æ
AO, ao
Ꜵ, ꜵ
U+A734, U+A735
Ꜵ ꜵ
AU, au
Ꜷ, ꜷ
U+A736, U+A737
Ꜷ ꜷ
AV, av
Ꜹ, ꜹ
U+A738, U+A739
Ꜹ ꜹ
AV, av (with bar)
Ꜻ, ꜻ
U+A73A, U+A73B
Ꜻ ꜻ
AY, ay
Ꜽ, ꜽ
U+A73C, U+A73D
Ꜽ ꜽ
et
🙰
U+1F670
🙰
f‌f
ff
U+FB00
ff
f‌f‌i
ffi
U+FB03
ffi
f‌f‌l
ffl
U+FB04
ffl
f‌i
fi
U+FB01
fi
f‌l
fl
U+FB02
fl
OE, oe
Œ, œ
U+0152, U+0153
Œ œ
OO, oo
Ꝏ, ꝏ
U+A74E, U+A74F
Ꝏ ꝏ
ſs, ſz
ẞ, ß
U+1E9E, U+00DF
ß
st
st
U+FB06
st
ſt
ſt
U+FB05
ſt
TZ, tz
Ꜩ, ꜩ
U+A728, U+A729
Ꜩ ꜩ
ue
ᵫ
U+1D6B
ᵫ
VY, vy
Ꝡ, ꝡ
U+A760, U+A761
Ꝡ ꝡ
There are a few other ligatures that are used for phonetic transcription but looks like Latin characters
Non-ligature
Ligature
Unicode
HTML
db
ȸ
U+0238
ȸ
dz
ʣ
U+02A3
ʣ
IJ, ij
IJ, ij
U+0132, U+0133
IJ ij
ls
ʪ
U+02AA
ʪ
lz
ʫ
U+02AB
ʫ
qp
ȹ
U+0239
ȹ
ts
ʦ
U+02A6
ʦ
ui
ꭐ
U+AB50
ꭐ
turned ui
ꭑ
U+AB51
ꭑ
https://en.wikipedia.org/wiki/List_of_precomposed_Latin_characters_in_Unicode#Digraphs_and_ligatures
Edit:
There are more letterlike symbols beside ℻ and ℡ like what the OP found in the comment:
℀ ℁ ⅍ ℅ ℆ ℔ ℠ ™
Longer letters are mainly from the CJK Compatibility block
U+XXXX
0
1
2
3
4
5
6
7
8
9
A
B
C
D
E
F
U+338x
㎀
㎁
㎂
㎃
㎄
㎅
㎆
㎇
㎈
㎉
㎊
㎋
㎌
㎍
㎎
㎏
U+339x
㎐
㎑
㎒
㎓
㎔
㎕
㎖
㎗
㎘
㎙
㎚
㎛
㎜
㎝
㎞
㎟
U+33Ax
㎠
㎡
㎢
㎣
㎤
㎥
㎦
㎧
㎨
㎩
㎪
㎫
㎬
㎭
㎮
㎯
U+33Bx
㎰
㎱
㎲
㎳
㎴
㎵
㎶
㎷
㎸
㎹
㎺
㎻
㎼
㎽
㎾
㎿
U+33Cx
㏀
㏁
㏂
㏃
㏄
㏅
㏆
㏇
㏈
㏉
㏊
㏋
㏌
㏍
㏎
㏏
U+33Dx
㏐
㏑
㏒
㏓
㏔
㏕
㏖
㏗
㏘
㏙
㏚
㏛
㏜
㏝
㏞
㏟
Among the 3-letter-like symbols are ㎈ ㎑ ㎒ ㎓ ㎔㏒ ㏕ ㏖ ㏙ ㎪ ㎫ ㎬ ㎭ ㏆ ㏿ ㍱... Probably the ones with most characters are ㎉ and ㎯
Unicode even have codepoints for Roman numerals. Here another 4-letter-like character can be found: Ⅷ
U+XXXX
0
1
2
3
4
5
6
7
8
9
A
B
C
D
E
F
U+215x
⅐
⅑
⅒
⅓
⅔
⅕
⅖
⅗
⅘
⅙
⅚
⅛
⅜
⅝
⅞
⅟
U+216x
Ⅰ
Ⅱ
Ⅲ
Ⅳ
Ⅴ
Ⅵ
Ⅶ
Ⅷ
Ⅸ
Ⅹ
Ⅺ
Ⅻ
Ⅼ
Ⅽ
Ⅾ
Ⅿ
U+217x
ⅰ
ⅱ
ⅲ
ⅳ
ⅴ
ⅵ
ⅶ
ⅷ
ⅸ
ⅹ
ⅺ
ⅻ
ⅼ
ⅽ
ⅾ
ⅿ
U+218x
ↀ
ↁ
ↂ
Ↄ
ↄ
ↅ
ↆ
ↇ
ↈ
↉
↊
↋
If normal numbers can be considered then there are some other code points for multiple digits like ⒆ ⒇ ⓳ ⓴ in enclosed alphanumerics
U+XXXX
0
1
2
3
4
5
6
7
8
9
A
B
C
D
E
F
U+246x
①
②
③
④
⑤
⑥
⑦
⑧
⑨
⑩
⑪
⑫
⑬
⑭
⑮
⑯
U+247x
⑰
⑱
⑲
⑳
⑴
⑵
⑶
⑷
⑸
⑹
⑺
⑻
⑼
⑽
⑾
⑿
U+248x
⒀
⒁
⒂
⒃
⒄
⒅
⒆
⒇
⒈
⒉
⒊
⒋
⒌
⒍
⒎
⒏
U+249x
⒐
⒑
⒒
⒓
⒔
⒕
⒖
⒗
⒘
⒙
⒚
⒛
⒜
⒝
⒞
⒟
U+24Ax
⒠
⒡
⒢
⒣
⒤
⒥
⒦
⒧
⒨
⒩
⒪
⒫
⒬
⒭
⒮
⒯
U+24Bx
⒰
⒱
⒲
⒳
⒴
⒵
Ⓐ
Ⓑ
Ⓒ
Ⓓ
Ⓔ
Ⓕ
Ⓖ
Ⓗ
Ⓘ
Ⓙ
U+24Cx
Ⓚ
Ⓛ
Ⓜ
Ⓝ
Ⓞ
Ⓟ
Ⓠ
Ⓡ
Ⓢ
Ⓣ
Ⓤ
Ⓥ
Ⓦ
Ⓧ
Ⓨ
Ⓩ
U+24Dx
ⓐ
ⓑ
ⓒ
ⓓ
ⓔ
ⓕ
ⓖ
ⓗ
ⓘ
ⓙ
ⓚ
ⓛ
ⓜ
ⓝ
ⓞ
ⓟ
U+24Ex
ⓠ
ⓡ
ⓢ
ⓣ
ⓤ
ⓥ
ⓦ
ⓧ
ⓨ
ⓩ
⓪
⓫
⓬
⓭
⓮
⓯
U+24Fx
⓰
⓱
⓲
⓳
⓴
⓵
⓶
⓷
⓸
⓹
⓺
⓻
⓼
⓽
⓾
⓿
and in Enclosed Alphanumeric Supplement
🅫, 🅪, 🆋, 🆌, 🆍, 🄭, 🄮, 🅊, 🅋, 🅌, 🅍, 🅎, 🅏
A few more:
Currency symbol group
₧ ₨ ₶ ₯ ₠ ₢ ₷
Miscellaneous technical group
⎂ ⏨
Control pictures (probably you'll need to zoom out to see)
U+XXXX
0
1
2
3
4
5
6
7
8
9
A
B
C
D
E
F
U+240x
␀
␁
␂
␃
␄
␅
␆
␇
␈
␉
␊
␋
␌
␍
␎
␏
U+241x
␐
␑
␒
␓
␔
␕
␖
␗
␘
␙
␚
␛
␜
␝
␞
␟
U+242x
␠
␡
␢
␣
␤
␥
␦
Alchemical Symbols
🜀 🜅 🜆 🜇 🜈 🝪 🝫 🝬 🝛 🝜 🝝
Musical Symbols
𝄶 𝄷 𝄸 𝄹 𝄉 𝄊 𝄫
And there are the emojis 🔟 💤🆔🚾🆖🆗🔢🔡🔠 💯🆘🆎🆑™🔙🔚🔜🔝🔛📆🗓🔞
Vertical bars may be considered uppercase i or lowercase L (like your 〷 example which is actually the TELEGRAPH LINE FEED SEPARATOR SYMBOL) and we have
Vai syllable see ꔖ 0xa516
Large triple vertical bar operator ⫼ 0x2afc
Counting rod tens digit three: 𝍫 0x1d36b
Suzhou numerals 〢 〣
Chinese river 川
║ BOX DRAWINGS DOUBLE VERTICAL...
Here's the automatic script to find the multi-character letters
import unicodedata
for c in range(0, 0x10FFFF + 1):
d = unicodedata.normalize('NFKD', chr(c))
if len(d) > 1 and d.isascii() and d.isalpha():
print("U+%04X (%s): %s\n" % (c, chr(c), d))
It won't be able to find many ligatures like æ or œ because they're not considered orthographic ligatures and aren't decomposable in Unicode. Here's the result in Unicode 11.0.0 (checked with unicodedata.unidata_version)
U+0132 (IJ): IJ
U+0133 (ij): ij
U+01C7 (LJ): LJ
U+01C8 (Lj): Lj
U+01C9 (lj): lj
U+01CA (NJ): NJ
U+01CB (Nj): Nj
U+01CC (nj): nj
U+01F1 (DZ): DZ
U+01F2 (Dz): Dz
U+01F3 (dz): dz
U+20A8 (₨): Rs
U+2116 (№): No
U+2120 (℠): SM
U+2121 (℡): TEL
U+2122 (™): TM
U+213B (℻): FAX
U+2161 (Ⅱ): II
U+2162 (Ⅲ): III
U+2163 (Ⅳ): IV
U+2165 (Ⅵ): VI
U+2166 (Ⅶ): VII
U+2167 (Ⅷ): VIII
U+2168 (Ⅸ): IX
U+216A (Ⅺ): XI
U+216B (Ⅻ): XII
U+2171 (ⅱ): ii
U+2172 (ⅲ): iii
U+2173 (ⅳ): iv
U+2175 (ⅵ): vi
U+2176 (ⅶ): vii
U+2177 (ⅷ): viii
U+2178 (ⅸ): ix
U+217A (ⅺ): xi
U+217B (ⅻ): xii
U+3250 (㉐): PTE
U+32CC (㋌): Hg
U+32CD (㋍): erg
U+32CE (㋎): eV
U+32CF (㋏): LTD
U+3371 (㍱): hPa
U+3372 (㍲): da
U+3373 (㍳): AU
U+3374 (㍴): bar
U+3375 (㍵): oV
U+3376 (㍶): pc
U+3377 (㍷): dm
U+337A (㍺): IU
U+3380 (㎀): pA
U+3381 (㎁): nA
U+3383 (㎃): mA
U+3384 (㎄): kA
U+3385 (㎅): KB
U+3386 (㎆): MB
U+3387 (㎇): GB
U+3388 (㎈): cal
U+3389 (㎉): kcal
U+338A (㎊): pF
U+338B (㎋): nF
U+338E (㎎): mg
U+338F (㎏): kg
U+3390 (㎐): Hz
U+3391 (㎑): kHz
U+3392 (㎒): MHz
U+3393 (㎓): GHz
U+3394 (㎔): THz
U+3396 (㎖): ml
U+3397 (㎗): dl
U+3398 (㎘): kl
U+3399 (㎙): fm
U+339A (㎚): nm
U+339C (㎜): mm
U+339D (㎝): cm
U+339E (㎞): km
U+33A9 (㎩): Pa
U+33AA (㎪): kPa
U+33AB (㎫): MPa
U+33AC (㎬): GPa
U+33AD (㎭): rad
U+33B0 (㎰): ps
U+33B1 (㎱): ns
U+33B3 (㎳): ms
U+33B4 (㎴): pV
U+33B5 (㎵): nV
U+33B7 (㎷): mV
U+33B8 (㎸): kV
U+33B9 (㎹): MV
U+33BA (㎺): pW
U+33BB (㎻): nW
U+33BD (㎽): mW
U+33BE (㎾): kW
U+33BF (㎿): MW
U+33C3 (㏃): Bq
U+33C4 (㏄): cc
U+33C5 (㏅): cd
U+33C8 (㏈): dB
U+33C9 (㏉): Gy
U+33CA (㏊): ha
U+33CB (㏋): HP
U+33CC (㏌): in
U+33CD (㏍): KK
U+33CE (㏎): KM
U+33CF (㏏): kt
U+33D0 (㏐): lm
U+33D1 (㏑): ln
U+33D2 (㏒): log
U+33D3 (㏓): lx
U+33D4 (㏔): mb
U+33D5 (㏕): mil
U+33D6 (㏖): mol
U+33D7 (㏗): PH
U+33D9 (㏙): PPM
U+33DA (㏚): PR
U+33DB (㏛): sr
U+33DC (㏜): Sv
U+33DD (㏝): Wb
U+33FF (㏿): gal
U+FB00 (ff): ff
U+FB01 (fi): fi
U+FB02 (fl): fl
U+FB03 (ffi): ffi
U+FB04 (ffl): ffl
U+FB05 (ſt): st
U+FB06 (st): st
U+1F12D (🄭): CD
U+1F12E (🄮): WZ
U+1F14A (🅊): HV
U+1F14B (🅋): MV
U+1F14C (🅌): SD
U+1F14D (🅍): SS
U+1F14E (🅎): PPV
U+1F14F (🅏): WC
U+1F16A (🅪): MC
U+1F16B (🅫): MD
U+1F190 (🆐): DJ

Compare contrasts in linear model in Python (like Rs contrast library?)

In R I can do the following to compare two contrasts from a linear model:
url <- "https://raw.githubusercontent.com/genomicsclass/dagdata/master/inst/extdata/spider_wolff_gorb_2013.csv"
filename <- "spider_wolff_gorb_2013.csv"
install.packages("downloader", repos="http://cran.us.r-project.org")
library(downloader)
if (!file.exists(filename)) download(url, filename)
spider <- read.csv(filename, skip=1)
head(spider, 5)
# leg type friction
# 1 L1 pull 0.90
# 2 L1 pull 0.91
# 3 L1 pull 0.86
# 4 L1 pull 0.85
# 5 L1 pull 0.80
fit = lm(friction ~ type + leg, data=spider)
fit
# Call:
# lm(formula = friction ~ type + leg, data = spider)
#
# Coefficients:
# (Intercept) typepush legL2 legL3 legL4
# 1.0539 -0.7790 0.1719 0.1605 0.2813
install.packages("contrast", repos="http://cran.us.r-project.org")
library(contrast)
l4vsl2 = contrast(fit, list(leg="L4", type="pull"), list(leg="L2",type="pull"))
l4vsl2
# lm model parameter contrast
#
# Contrast S.E. Lower Upper t df Pr(>|t|)
# 0.1094167 0.04462392 0.02157158 0.1972618 2.45 277 0.0148
I have found out how to do much of the above in Python:
import pandas as pd
df = pd.read_table("https://raw.githubusercontent.com/genomicsclass/dagdata/master/inst/extdata/spider_wolff_gorb_2013.csv", sep=",", skiprows=1)
df.head(2)
import statsmodels.formula.api as sm
model1 = sm.ols(formula='friction ~ type + leg', data=df)
fitted1 = model1.fit()
print(fitted1.summary())
Now all that remains is finding the t-statistic for the contrast of leg pair L4 vs. leg pair L2. Is this possible in Python?
statsmodels is still missing some predefined contrasts, but the t_test and wald_test or f_test methods of the model Results classes can be used to test linear (or affine) restrictions. The restrictions either be given by arrays or by strings using the parameter names.
Details for how to specify contrasts/restrictions should be in the documentation
for example
>>> tt = fitted1.t_test("leg[T.L4] - leg[T.L2]")
>>> print(tt.summary())
Test for Constraints
==============================================================================
coef std err t P>|t| [0.025 0.975]
------------------------------------------------------------------------------
c0 0.1094 0.045 2.452 0.015 0.022 0.197
==============================================================================
The results are attributes or methods in the instance that is returned by t_test. For example the conf_int can be obtained by
>>> tt.conf_int()
array([[ 0.02157158, 0.19726175]])
t_test is vectorized and treats each restriction or contrast as separate hypothesis. wald_test treats a list of restrictions as joint hypothesis:
>>> tt = fitted1.t_test(["leg[T.L3] - leg[T.L2], leg[T.L4] - leg[T.L2]"])
>>> print(tt.summary())
Test for Constraints
==============================================================================
coef std err t P>|t| [0.025 0.975]
------------------------------------------------------------------------------
c0 -0.0114 0.043 -0.265 0.792 -0.096 0.074
c1 0.1094 0.045 2.452 0.015 0.022 0.197
==============================================================================
>>> tt = fitted1.wald_test(["leg[T.L3] - leg[T.L2], leg[T.L4] - leg[T.L2]"])
>>> print(tt.summary())
<F test: F=array([[ 8.10128575]]), p=0.00038081249480917173, df_denom=277, df_num=2>
Aside: this also works for robust covariance matrices if cov_type was specified as argument to fit.

Read .txt file value after a certain string (Matlab)

I'm trying to obtain the displacements of a node from an FEA .txt results file using matlab. I want to search for the node (e.g. 5151) and then read the displacements, the problem is the node is mentioned a couple of times before getting to the deformations.
The part of the results I'm interested in looks like this......
N O D E O U T P U T
THE FOLLOWING TABLE IS PRINTED FOR NODES BELONGING TO NODE SET ASSEMBLY_TIP_NODES
NODE FOOT- U1 U2 U3 UR1 UR2 UR3
NOTE
5101 2.6105E-03 -1.1943E-02 6.0023E-03 -8.6770E-02 -1.6432E-02 -1.1048E-02
5102 2.5224E-03 -1.1267E-02 5.6868E-03 -8.6763E-02 -1.6390E-02 -1.0943E-02
5103 2.4340E-03 -1.0589E-02 5.3709E-03 -8.6725E-02 -1.6269E-02 -1.0666E-02
5104 2.3455E-03 -9.9121E-03 5.0549E-03 -8.6542E-02 -1.6052E-02 -1.0267E-02
5105 2.2575E-03 -9.2374E-03 4.7396E-03 -8.6041E-02 -1.5708E-02 -9.7843E-03
5106 2.1710E-03 -8.5682E-03 4.4262E-03 -8.5111E-02 -1.5217E-02 -9.2317E-03
5107 2.0869E-03 -7.9085E-03 4.1164E-03 -8.3688E-02 -1.4585E-02 -8.6334E-03
5108 2.0063E-03 -7.2623E-03 3.8120E-03 -8.1750E-02 -1.3825E-02 -8.0049E-03
5109 1.9299E-03 -6.6336E-03 3.5150E-03 -7.9308E-02 -1.2958E-02 -7.3631E-03
5110 1.8586E-03 -6.0265E-03 3.2271E-03 -7.6400E-02 -1.2011E-02 -6.7206E-03
5111 1.7928E-03 -5.4442E-03 2.9500E-03 -7.3084E-02 -1.1010E-02 -6.0892E-03
5112 1.7329E-03 -4.8897E-03 2.6851E-03 -6.9435E-02 -9.9818E-03 -5.4777E-03
5113 1.6791E-03 -4.3652E-03 2.4334E-03 -6.5533E-02 -8.9528E-03 -4.8933E-03
etc, so what I want to do is search for a unique string ' N O D E O U T P U T' and then search for '5151' and import its displacements into an array.
Example output
nodeDisp = 1.6791E-03 -4.3652E-03 2.4334E-03 -6.5533E-02 -8.9528E-03 -4.8933E-03

DNA to RNA and Getting Proteins with Perl

I am working on a project(I have to implement it in Perl but I am not good at it) that reads DNA and finds its RNA. Divide that RNA's into triplets to get the equivalent protein name of it. I will explain the steps:
1) Transcribe the following DNA to RNA, then use the genetic code to translate it to a sequence of amino acids
Example:
TCATAATACGTTTTGTATTCGCCAGCGCTTCGGTGT
2) To transcribe the DNA, first substitute each DNA for it’s counterpart (i.e., G for C, C for G, T for A and A for T):
TCATAATACGTTTTGTATTCGCCAGCGCTTCGGTGT
AGTATTATGCAAAACATAAGCGGTCGCGAAGCCACA
Next, remember that the Thymine (T) bases become a Uracil (U). Hence our sequence becomes:
AGUAUUAUGCAAAACAUAAGCGGUCGCGAAGCCACA
Using the genetic code is like that
AGU AUU AUG CAA AAC AUA AGC GGU CGC GAA GCC ACA
then look each triplet (codon) up in the genetic code table. So AGU becomes Serine, which we can write as Ser, or
just S. AUU becomes Isoleucine (Ile), which we write as I. Carrying on in this way, we get:
SIMQNISGREAT
I will give the protein table:
So how can I write that code in Perl? I will edit my question and write the code that what I did.
Try the script below, it accepts input on STDIN (or in file given as parameter) and read it by line. I also presume, that "STOP" in the image attached is some stop state. Hope I read it all well from that picture.
#!/usr/bin/perl
use strict;
use warnings;
my %proteins = qw/
UUU F UUC F UUA L UUG L UCU S UCC S UCA S UCG S UAU Y UAC Y UGU C UGC C UGG W
CUU L CUC L CUA L CUG L CCU P CCC P CCA P CCG P CAU H CAC H CAA Q CAG Q CGU R CGC R CGA R CGG R
AUU I AUC I AUA I AUG M ACU T ACC T ACA T ACG T AAU N AAC N AAA K AAG K AGU S AGC S AGA R AGG R
GUU V GUC V GUA V GUG V GCU A GCC A GCA A GCG A GAU D GAC D GAA E GAG E GGU G GGC G GGA G GGG G
/;
LINE: while (<>) {
chomp;
y/GCTA/CGAU/; # translate (point 1&2 mixed)
foreach my $protein (/(...)/g) {
if (defined $proteins{$protein}) {
print $proteins{$protein};
}
else {
print "Whoops, stop state?\n";
next LINE;
}
}
print "\n"
}