How can you control the compile order in leininigen? [duplicate] - eclipse

I'm just learning how to lein, and I'd like to use from a Java source
a class created by deftype in a Clojure source. This wasn't covered in the basic
tutorial and I can't get it to work properly.
The problem is that Java source can't import Clojure class, since it hasn't
been compiled yet. And Clojure class isn't compiled, since compilation is aborted
by the Java source.
I give a minimal example:
Create a new project with:
lein new app javafoo
Add to project.clj
:aot :all
:java-source-paths ["src/java"]
Put into src/javafoo/core.clj:
(ns javafoo.core)
(deftype PPoint [x y])
Put into src/java/JavaFoo.java:
package foo.java;
import javafoo.core.PPoint;
public class JavaFoo {
public static void main(String[] args) {
System.out.println("JavaFoo");
}
}
Try to compile
lein compile
It fails with package javafoo.core doesn't exist.
So now I have to
Comment out :java-source-paths
Compile
Uncomment :java-source-paths
Compile
It finally works. Is there a way to make it work from the start?

Add this line to your project.clj:
:prep-tasks [["compile" "javafoo.core"] "javac"]

Related

Getting error log while previewing report from Jasper [duplicate]

I am getting a NoClassDefFoundError when I run my Java application. What is typically the cause of this?
While it's possible that this is due to a classpath mismatch between compile-time and run-time, it's not necessarily true.
It is important to keep two or three different exceptions straight in our head in this case:
java.lang.ClassNotFoundException This exception indicates that the class was not found on the classpath. This indicates that we were trying to load the class definition, and the class did not exist on the classpath.
java.lang.NoClassDefFoundError This exception indicates that the JVM looked in its internal class definition data structure for the definition of a class and did not find it. This is different than saying that it could not be loaded from the classpath. Usually this indicates that we previously attempted to load a class from the classpath, but it failed for some reason - now we're trying to use the class again (and thus need to load it, since it failed last time), but we're not even going to try to load it, because we failed loading it earlier (and reasonably suspect that we would fail again). The earlier failure could be a ClassNotFoundException or an ExceptionInInitializerError (indicating a failure in the static initialization block) or any number of other problems. The point is, a NoClassDefFoundError is not necessarily a classpath problem.
This is caused when there is a class file that your code depends on and it is present at compile time but not found at runtime. Look for differences in your build time and runtime classpaths.
Here is the code to illustrate java.lang.NoClassDefFoundError. Please see Jared's answer for detailed explanation.
NoClassDefFoundErrorDemo.java
public class NoClassDefFoundErrorDemo {
public static void main(String[] args) {
try {
// The following line would throw ExceptionInInitializerError
SimpleCalculator calculator1 = new SimpleCalculator();
} catch (Throwable t) {
System.out.println(t);
}
// The following line would cause NoClassDefFoundError
SimpleCalculator calculator2 = new SimpleCalculator();
}
}
SimpleCalculator.java
public class SimpleCalculator {
static int undefined = 1 / 0;
}
NoClassDefFoundError In Java
Definition:
Java Virtual Machine is not able to find a particular class at runtime which was available at compile time.
If a class was present during compile time but not available in java classpath during runtime.
Examples:
The class is not in Classpath, there is no sure shot way of knowing it but many times you can just have a look to print System.getproperty("java.classpath") and it will print the classpath from there you can at least get an idea of your actual runtime classpath.
A simple example of NoClassDefFoundError is class belongs to a missing JAR file or JAR was not added into classpath or sometimes jar's name has been changed by someone like in my case one of my colleagues has changed tibco.jar into tibco_v3.jar and the program is failing with java.lang.NoClassDefFoundError and I were wondering what's wrong.
Just try to run with explicitly -classpath option with the classpath you think will work and if it's working then it's a sure short sign that someone is overriding java classpath.
Permission issue on JAR file can also cause NoClassDefFoundError in Java.
Typo on XML Configuration can also cause NoClassDefFoundError in Java.
when your compiled class which is defined in a package, doesn’t present in the same package while loading like in the case of JApplet it will throw NoClassDefFoundError in Java.
Possible Solutions:
The class is not available in Java Classpath.
If you are working in J2EE environment than the visibility of Class among multiple Classloader can also cause java.lang.NoClassDefFoundError, see examples and scenario section for detailed discussion.
Check for java.lang.ExceptionInInitializerError in your log file. NoClassDefFoundError due to the failure of static initialization is quite common.
Because NoClassDefFoundError is a subclass of java.lang.LinkageError it can also come if one of it dependency like native library may not available.
Any start-up script is overriding Classpath environment variable.
You might be running your program using jar command and class was not defined in manifest file's ClassPath attribute.
Resources:
3 ways to solve NoClassDefFoundError
java.lang.NoClassDefFoundError Problem patterns
I have found that sometimes I get a NoClassDefFound error when code is compiled with an incompatible version of the class found at runtime. The specific instance I recall is with the apache axis library. There were actually 2 versions on my runtime classpath and it was picking up the out of date and incompatible version and not the correct one, causing a NoClassDefFound error. This was in a command line app where I was using a command similar to this.
set classpath=%classpath%;axis.jar
I was able to get it to pick up the proper version by using:
set classpath=axis.jar;%classpath%;
One interesting case in which you might see a lot of NoClassDefFoundErrors is when you:
throw a RuntimeException in the static block of your class Example
Intercept it (or if it just doesn't matter like it is thrown in a test case)
Try to create an instance of this class Example
static class Example {
static {
thisThrowsRuntimeException();
}
}
static class OuterClazz {
OuterClazz() {
try {
new Example();
} catch (Throwable ignored) { //simulating catching RuntimeException from static block
// DO NOT DO THIS IN PRODUCTION CODE, THIS IS JUST AN EXAMPLE in StackOverflow
}
new Example(); //this throws NoClassDefFoundError
}
}
NoClassDefError will be thrown accompanied with ExceptionInInitializerError from the static block RuntimeException.
This is especially important case when you see NoClassDefFoundErrors in your UNIT TESTS.
In a way you're "sharing" the static block execution between tests, but the initial ExceptionInInitializerError will be just in one test case. The first one that uses the problematic Example class. Other test cases that use the Example class will just throw NoClassDefFoundErrors.
This is the best solution I found so far.
Suppose we have a package called org.mypackage containing the classes:
HelloWorld (main class)
SupportClass
UtilClass
and the files defining this package are stored physically under the directory D:\myprogram (on Windows) or /home/user/myprogram (on Linux).
The file structure will look like this:
When we invoke Java, we specify the name of the application to run: org.mypackage.HelloWorld. However we must also tell Java where to look for the files and directories defining our package. So to launch the program, we have to use the following command:
I was using Spring Framework with Maven and solved this error in my project.
There was a runtime error in the class. I was reading a property as integer, but when it read the value from the property file, its value was double.
Spring did not give me a full stack trace of on which line the runtime failed.
It simply said NoClassDefFoundError. But when I executed it as a native Java application (taking it out of MVC), it gave ExceptionInInitializerError which was the true cause and which is how I traced the error.
#xli's answer gave me insight into what may be wrong in my code.
I get NoClassFoundError when classes loaded by the runtime class loader cannot access classes already loaded by the java rootloader. Because the different class loaders are in different security domains (according to java) the jvm won't allow classes already loaded by the rootloader to be resolved in the runtime loader address space.
Run your program with 'java -javaagent:tracer.jar [YOUR java ARGS]'
It produces output showing the loaded class, and the loader env that loaded the class. It's very helpful tracing why a class cannot be resolved.
// ClassLoaderTracer.java
// From: https://blogs.oracle.com/sundararajan/entry/tracing_class_loading_1_5
import java.lang.instrument.*;
import java.security.*;
// manifest.mf
// Premain-Class: ClassLoadTracer
// jar -cvfm tracer.jar manifest.mf ClassLoaderTracer.class
// java -javaagent:tracer.jar [...]
public class ClassLoadTracer
{
public static void premain(String agentArgs, Instrumentation inst)
{
final java.io.PrintStream out = System.out;
inst.addTransformer(new ClassFileTransformer() {
public byte[] transform(ClassLoader loader, String className, Class classBeingRedefined, ProtectionDomain protectionDomain, byte[] classfileBuffer) throws IllegalClassFormatException {
String pd = (null == protectionDomain) ? "null" : protectionDomain.getCodeSource().toString();
out.println(className + " loaded by " + loader + " at " + new java.util.Date() + " in " + pd);
// dump stack trace of the thread loading class
Thread.dumpStack();
// we just want the original .class bytes to be loaded!
// we are not instrumenting it...
return null;
}
});
}
}
The technique below helped me many times:
System.out.println(TheNoDefFoundClass.class.getProtectionDomain().getCodeSource().getLocation());
where the TheNoDefFoundClass is the class that might be "lost" due to a preference for an older version of the same library used by your program. This most frequently happens with the cases, when the client software is being deployed into a dominant container, armed with its own classloaders and tons of ancient versions of most popular libs.
Java ClassNotFoundException vs NoClassDefFoundError
[ClassLoader]
Static vs Dynamic class loading
Static(Implicit) class loading - result of reference, instantiation, or inheritance.
MyClass myClass = new MyClass();
Dynamic(Explicit) class loading is result of Class.forName(), loadClass(), findSystemClass()
MyClass myClass = (MyClass) Class.forName("MyClass").newInstance();
Every class has a ClassLoader which uses loadClass(String name); that is why
explicit class loader uses implicit class loader
NoClassDefFoundError is a part of explicit class loader. It is Error to guarantee that during compilation this class was presented but now (in run time) it is absent.
ClassNotFoundException is a part of implicit class loader. It is Exception to be elastic with scenarios where additionally it can be used - for example reflection.
In case you have generated-code (EMF, etc.) there can be too many static initialisers which consume all stack space.
See Stack Overflow question How to increase the Java stack size?.
Two different checkout copies of the same project
In my case, the problem was Eclipse's inability to differentiate between two different copies of the same project. I have one locked on trunk (SVN version control) and the other one working in one branch at a time. I tried out one change in the working copy as a JUnit test case, which included extracting a private inner class to be a public class on its own and while it was working, I open the other copy of the project to look around at some other part of the code that needed changes. At some point, the NoClassDefFoundError popped up complaining that the private inner class was not there; double-clicking in the stack trace brought me to the source file in the wrong project copy.
Closing the trunk copy of the project and running the test case again got rid of the problem.
I fixed my problem by disabling the preDexLibraries for all modules:
dexOptions {
preDexLibraries false
...
I got this error when I add Maven dependency of another module to my project, the issue was finally solved by add -Xss2m to my program's JVM option(It's one megabyte by default since JDK5.0). It's believed the program does not have enough stack to load class.
In my case I was getting this error due to a mismatch in the JDK versions. When I tried to run the application from Intelij it wasn't working but then running it from the command line worked. This is because Intelij was attempting to run it with the Java 11 JDK that was setup but on the command line it was running with the Java 8 JDK. After switching that setting under File > Project Structure > Project Settings > Project SDK, it worked for me.
Update [https://www.infoq.com/articles/single-file-execution-java11/]:
In Java SE 11, you get the option to launch a single source code file
directly, without intermediate compilation. Just for your convenience,
so that newbies like you don't have to run javac + java (of course,
leaving them confused why that is).
NoClassDefFoundError can also occur when a static initializer tries to load a resource bundle that is not available in runtime, for example a properties file that the affected class tries to load from the META-INF directory, but isn’t there. If you don’t catch NoClassDefFoundError, sometimes you won’t be able to see the full stack trace; to overcome this you can temporarily use a catch clause for Throwable:
try {
// Statement(s) that cause(s) the affected class to be loaded
} catch (Throwable t) {
Logger.getLogger("<logger-name>").info("Loading my class went wrong", t);
}
I was getting NoClassDefFoundError while trying to deploy application on Tomcat/JBOSS servers. I played with different dependencies to resolve the issue, but kept getting the same error. Marked all javax.* dependencies as provided in pom.xml, And war literally had no Dependency in it. Still the issue kept popping up.
Finally realized that src/main/webapps/WEB-INF/classes had classes folder which was getting copied into my war, so instead of compiled classes, this classes were getting copied, hence no dependency change was resolving the issue.
Hence be careful if any previously compiled data is getting copied, After deleting classes folder and fresh compilation, It worked!..
If someone comes here because of java.lang.NoClassDefFoundError: org/apache/log4j/Logger error, in my case it was produced because I used log4j 2 (but I didn't add all the files that come with it), and some dependency library used log4j 1. The solution was to add the Log4j 1.x bridge: the jar log4j-1.2-api-<version>.jar which comes with log4j 2. More info in the log4j 2 migration.
This error can be caused by unchecked Java version requirements.
In my case I was able to resolve this error, while building a high-profile open-source project, by switching from Java 9 to Java 8 using SDKMAN!.
sdk list java
sdk install java 8u152-zulu
sdk use java 8u152-zulu
Then doing a clean install as described below.
When using Maven as your build tool, it is sometimes helpful -- and usually gratifying, to do a clean 'install' build with testing disabled.
mvn clean install -DskipTests
Now that everything has been built and installed, you can go ahead and run the tests.
mvn test
I got NoClassDefFound errors when I didn't export a class on the "Order and Export" tab in the Java Build Path of my project. Make sure to put a checkmark in the "Order and Export" tab of any dependencies you add to the project's build path. See Eclipse warning: XXXXXXXXXXX.jar will not be exported or published. Runtime ClassNotFoundExceptions may result.
It could also be because you copy the code file from an IDE with a certain package name and you want to try to run it using terminal. You will have to remove the package name from the code first.
This happens to me.
Everyone talks here about some Java configuration stuff, JVM problems etc., in my case the error was not related to these topics at all and had a very trivial and easy to solve reason: I had a wrong annotation at my endpoint in my Controller (Spring Boot application).
I have had an interesting issue wiht NoClassDefFoundError in JavaEE working with Liberty server. I was using IMS resource adapters and my server.xml had already resource adapter for imsudbJXA.rar.
When I added new adapter for imsudbXA.rar, I would start getting this error for instance objects for DLIException, IMSConnectionSpec or SQLInteractionSpec.
I could not figure why but I resolved it by creating new server.xml for my work using only imsudbXA.rar. I am sure using multiple resource adapters in server.xml is fine, I just had no time to look into that.
I had this error but could not figure out the solution based on this thread but solved it myself.
For my problem I was compiling this code:
package valentines;
import java.math.BigInteger;
import java.util.ArrayList;
public class StudentSolver {
public static ArrayList<Boolean> solve(ArrayList<ArrayList<BigInteger>> problems) {
//DOING WORK HERE
}
public static void main(String[] args){
//TESTING SOLVE FUNCTION
}
}
I was then compiling this code in a folder structure that was like /ProjectName/valentines
Compiling it worked fine but trying to execute: java StudentSolver
I was getting the NoClassDefError.
To fix this I simply removed: package valentines;
I'm not very well versed in java packages and such but this how I fixed my error so sorry if this was already answered by someone else but I couldn't interpret it to my problem.
My solution to this was to "avail" the classpath contents for the specific classes that were missing. In my case, I had 2 dependencies, and though I was able to compile successfully using javac ..., I was not able to run the resulting class file using java ..., because a Dynamic class in the BouncyCastle jar could not be loaded at runtime.
javac --classpath "ext/commons-io-2.11.0;ext/bc-fips-1.0.2.3" hello.java
So at compile time and by runtime, the JVM is aware of where to fetch Apache Commons and BouncyCastle dependencies, however, when running this, I got
Error: Unable to initialize main class hello
Caused by: java.lang.NoClassDefFoundError:
org/bouncycastle/jcajce/provider/BouncyCastleFipsProvider
And I therefore manually created a new folder named ext at the same location, as per the classpath, where I then placed the BouncyCastle jar to ensure it would be found at runtime. You can place the jar relative to the class file or the jar file as long as the resulting manifest has the location of the jar specified. Note I only need to avail the one jar containing the missing class file.
Java was unable to find the class A in runtime.
Class A was in maven project ArtClient from a different workspace.
So I imported ArtClient to my Eclipse project.
Two of my projects was using ArtClient as dependency.
I changed library reference to project reference for these ones (Build Path -> Configure Build Path).
And the problem gone away.
I had the same problem, and I was stock for many hours.
I found the solution. In my case, there was the static method defined due to that. The JVM can not create the another object of that class.
For example,
private static HttpHost proxy = new HttpHost(proxyHost, Integer.valueOf(proxyPort), "http");
I got this message after removing two files from the SRC library, and when I brought them back I kept seeing this error message.
My solution was: Restart Eclipse. Since then I haven't seen this message again :-)

Error when calling Native Code using JNI from a Jython module

I am calling a simple HelloWorld program written in C from a Jython module (inside a PyDev project). There is an intermediate Java Class (in a separate Java project) which calls the native code using JNI (Java Native Interface). The native call is successful if I run the Java class directly. But when I call the Java class from my Jython module, I get the following error:
java.lang.UnsatisfiedLinkError: no ctest in java.library.path
I have successfully run several C programs from my Jython module using JNA (Java Native Access). But JNA hits performance (speed) really hard and I want to revisit JNI and fix this problem (also I simply want to know what is going on). The IDE I am using is Eclipse.
Here is the code for the Java class:
package JNIPackage;
public class HelloWorld {
native void helloFromC(); /* (1) */
static {
// Added the line below but still no luck. Was sure this would fix it.
System.setProperty("java.library.path", "/Users/haiderriaz/Desktop/JNI-C");
System.loadLibrary("ctest"); /* (2) */
}
static public void main(String argv[]) {
HelloWorld helloWorld = new HelloWorld();
helloWorld.helloFromC(); /* (3) */
}
}
Running this Java class directly, there is no error and "Hello World" gets printed out. But when I import JNIPackage to my Jython module and then call JNIPackage.HelloWorld, then all of a sudden java can not find ctest. I think this is strange and the problem only exists when calling C code using JNI as opposed to JNA.
Try System.load([full path and filename of ctest]), which works independently from values of LD_LIBRARY_PATH or java.library.path.
To ease user configuration I usually implement my own library-search-mechanism, i.e. make it look for libraries in the working directory and on the classpath too. I know ideologically this is somewhat wrong, but works much smoother for your users. Use java.io.File.exists to confirm the actual location of ctest-file and then use java.io.File.getAbsolutePath() to get the appropriate input for System.load.
System.mapLibraryName(...) can also be useful for this.

How do use jMusic (a Java library) with Clojure?

I've decided I want to use Clojure's Java interoperability to play with the jMusic library. Because I know Java better than Clojure (by a lot), I'm testing things in Java and then rewriting them as (not-so-idiomatic) Clojure. I'm using Eclipse Luna with the Counterclockwise plugin, and am not using Maven, just Leiningen. As a quick aside, I don't want to use Emacs because I want to focus on learning one tool at a time.
To incorporate jMusic, I've downloaded the file and am right-clicking on the Project folder, selecting Build Path, and selecting Add External Archive. I've done that with both the Clojure project and the Java project. I have the following Java code:
import jm.music.data.Note;
import jm.util.Play;
public final class TestMusic {
public static void main(String[] args) {
Play.midi(new Note());
}
}
This program runs and makes noise without issue. I cannot reproduce this in Clojure. I wrote the following code (which could be wrong, but that's a separate issue):
(ns my-clojure-test.core
(:use jm.music.data Note)
(:use jm.util Play))
(. Play midi (. Note))
And I get the following error:
;; Clojure 1.6.0
CompilerException java.io.FileNotFoundException: Could not locate jm/music/data__init.class
or jm/music/data.clj on classpath: , compiling:(my_clojure_test/core.clj:1:1)
#<Namespace my-clojure-test.core>
I've tried doing the same right-click on the project and adding an external archive. I've moved the jMusic.jar to src/java, and also extracted its files alongside the .jar.
My project.clj file looks like this:
(defproject my-clojure-test "0.1.0-SNAPSHOT"
:description "FIXME: write description"
:url "http://example.com/FIXME"
:license {:name "Eclipse Public License"
:url "http://www.eclipse.org/legal/epl-v10.html"}
:dependencies [[org.clojure/clojure "1.6.0"]
[org.clojure/core.logic "0.8.10"]]
:source-paths ["src" "src/my-clojure-test"]
:java-source-paths ["src/java"])
How do I get Clojure to recognize the jMusic so I can make the aural "hello world" program play?
EDIT:
The selected answer does work, but do check the comments for more details about what I had to do to get it working, in case anyone else runs into the same problem.
To break down the error message:
CompilerException java.io.FileNotFoundException: Could not locate jm/music/data__init.class
or jm/music/data.clj on classpath: , compiling:(my_clojure_test/core.clj:1:1)
#<Namespace my-clojure-test.core>
This is saying that it was looking for either jm/music/data__init.class or jm/music/data.clj. Either one would suffice in order to load the namespace jm.music.data which you have asked for in your ns declaration. Of course there is no such Clojure namespace. This happened because you tried to use use to access classes, and it is designed for accessing namespaces. import is for accessing classes and packages.
(ns my-clojure-test.core
(:import (jm.music.data Note)
(jm.util Play)))
The . notation takes a method first, then the class, except when accessing a static method, in which case one should use /. The proper way to invoke a constructor is with the . following the classname, without any separator.
(Play/midi (Note.))

Java - running cmd

I'm trying to run a simple java test code. I'm getting a "can not find or load main class file "(something like that)
The tutorial I'm following uses this command
-> javac name.java (javac doesn't work, using ->java ..)
-> dir (shows the classname as a file)
> java classname
> outputs "hello world"
I can't seem to get past the ->java running.java
class apples //everything begins with a class - need this to do anything
{
public static void main(String args[])//method
{
System.out.println("Hello World");
}
}
There could be a few problems here. Check the following:
Are you saving the file as the name of the class plus .java, e.g. apples.java
When you execute it, are you typing the name of the class or the name of the class file? you should be typing java apples, not java apples.class or java apples.java.
EDIT:
I Noticed you haven't compiled the program using javac, which makes the progrm unrunnable by java [program_name]. You need to run javac [java_sourcde_file_name] to generate a .class file. If javac doesn't work, maybe:
You don't have the JDK (Java Development Kit) installed and should download it from Oracle
javac is not in your PATH - unlikely but possible - see http://www.apl.jhu.edu/~hall/java/beginner/settingup.html.
javac runs properly but your program doesn't compile properly. this seems unlikely given the program you posted looks fine.
class Apples //- need this to do anything
{
public static void main(String args[])//everything begins with a method
{
System.out.println("Hello World");
}
}
Make sure you are in current directory of java file
compile as
javac Apples.java
Run as
java Apples
Before working in it , should need to know the coding convention it would be better to work java
Well. All you have to do in Jaca is navigate you where your class files are stored and then use java "class name". You DO NOT need to put .java or .class. Just the name.
change your class name from apples to Apples (naming convention for java class names):
http://en.wikipedia.org/wiki/Naming_convention_%28programming%29#Java
also recommend you to change the file name accordingly...
then recompile and run it
javac Apples.java
java Apples
cheers

Execute a Groovy class in a package from the command line

Is there a way to execute a Groovy class by specifying the package with dots, as with java?
Example: File ./my/package/MyClass.groovy:
package my.package
class MyClass {
static void main(String[] args) {
println "ok"
}
}
> cd my/package
my/package> groovy MyClass
ok
> cd ../..
> groovy my/package/MyClass.groovy
ok
> groovy my/package/MyClass
ok
> groovy my.package.MyClass
Caught: java.io.FileNotFoundException: my.package.MyClass
I was expecting the last command to work. I tried various ways of setting the classpath, to no avail.
First of all, package is a reserved keyword, so you can't use it as a a package name.
Second of all, you can't do that in Groovy, since the dot notation is used for classes, not for scripts, so you need a compiled class file to use it.
Still, you can replace the groovy command with java + classpath:
java -cp /usr/share/java/groovy/embeddable/groovy-all-1.6.3.jar:. my.some.MyClass
You can add an alias to it 'g_java' for instance to make it less verbose.