Doxygen: Exclude undocumented files - doxygen

I have a framework which I am extending. There are some source folders which contain quite a lot of files and I want to document my work (especially those files which come from me) using doxygen.
Any file I am documenting contians a header:
/**
* #file my_file.c
* #author Stefan F.
* #date 28.05.2014
*
* #brief This file is awesome!
*/
Can I somehow tell doxygen to NOT include files without such a header?
I have already set
EXTRACT_ALL = NO
Files which don't have a doxygen header are not generated but they are still listed in the file list.
Does anyone know how to configure doxygen to get that behavior?

I'm not aware of any part of Doxygen that will do exactly what you are looking for, however, the simplest way to achieve your aim is simply to only list the files you want doxygenning in the doxyfile INPUT line.
INPUT = my_file_1.cpp myfile2.cpp moreofmyfiles/etc.cpp
(Beware it's a space separated list.)
Depending on your folder structure you may need to set RECURSIVE = NO
If it's your own personal project and you can name your file myname_file.cpp you could use FILE_PATTERNS to select only those files beginning "myname_* - but I'm expecting that's not a viable set of circumstances.

Related

How to avoid using doxygen's file command?

Doxygen has a \file command, I had a look at different code bases and it seems some projects use it, some don't.
Having to maintain this adds some overhead (needs to be corrected when splitting files up) sometimes developers forget to do it.
Is there a way to infer this, eg: use the first doxygen formatted comment in the file as the \file comment.
Otherwise what is a good rule of thumb for when to use \file or not?
Note, I tried removing this command from all files and the output changed to group information less usefully and the order of some information changed, so it does make a difference.

Doxygen: how to include a markdown page to document a group

I have a rather complex project and I want to document it using doxygen.
I have no problem documenting the code and I also managed to have a nice front-page using a custom README.md file coupled with "USE_MDFILE_AS_MAINPAGE = README.md" directive in Doxyfile.
I defined several groups (#defgroup) which show up as "Modules" in my documentation.
I would like to add a "main page" to each of the group giving general information, beside the customary function/variable/type documentation.
I tried adding custom MODULENAME.md files coupled with matching #includedoc MODULENAME.md entries in group definition, it seem to work (I see several lines like: "Generating docs for page md_mcu_noitr_coro_README..."), but I cannot find if and where the page is linked (I expected to see it in the "Detailed Description" for the module, as it happens if I put some documentation inline where I put the "#includedoc" directive.
a snippet of one of my modules is:
/**
* #file coro.h
* #brief definition of coroutine implementing functions.
*
* #date: Feb 8, 2018
* #author: myself
*
* #defgroup coro "Coroutine implementation in plain 'C'."
*
* #includedoc mcu_noitr/coro/README.md
* #{
*
*/
What am I doing wrong?
Note: it is also a bit surprising I need to put the whole path from where my Doxyfile is, otherwise doxygen won't find it even if it's right beside the file containing the #includedoc command.
I also came across the problem that included files with Markdown formatted text via \includedoc or \include{doc} does not result in correctly interpreted Markdown. Note that I included Markdown files from other Markdown files. My work-around was to use the C pre-processor (cpp) - which is widely available - on Markdown files and use it's #include directive. You could of course use a true general text processor such as M4 as suggested in the cpp man page. Set FILTER_PATTERNS in Doxyfile as:
FILTER_PATTERNS = *.md="cpp -P -traditional-cpp"
You'll need the -P option to avoid it outputting line markers, which confuses Doxygen. -traditional-cpp was needed to avoid cpp eating white space that is important for the correct interpretation of Markdown. Don't use single quotes as this results in an error when Doxygen calls cpp via sh.
Then in my Markdown main page:
Main Page {#mainpage}
==========
Blah blah blah.
#include "other.md"
Using FILTER_PATTERNS instead of INPUT_FILTER avoids the problem about not being allowed to add or remove lines.
I have my markdown files in the same directory, I would guess that if they are located in different places you could tell cpp about it via -I, which would address your expectations about include paths on the issue you filed.
At the moment doxygen does not consider the fact that commands like \includedoc can contain markdown code. At the moment the only possibility would be to write a filter, see configuration parateter INPUT_FILTER in the doxygen configuration file, (not tested!) to replace the \includedoc` with the code of that file.

Output Full File Path to HTML with Doxygen

I am creating a test list in Doxygen using the \test special command. I understand that I can click on the class name for that section and get taken through to the page that this test is in reference too.
What I would like however is in the test description for it to have a line which is the full file path.
Is there a special command to do this? or do I have to physically type it out into every comment block. below I have shown an example of what I want.
Class myTest
Perform a set of tests to verify foo & bar.
located in C:\MyFile
but I would like to write out my Doxygen comment like this:
/** \test
* Perform a set of tests to verify foo & bar.
* located in:
* \fullFilePath
*/
Is this possible?
Having scoured the special commands I've come to the conclusion that there is no Doxygen special command to give the result as in the question.
Doxygen does provide automatic hyperlinking for pages/files that it knows exist. Therefore in order to "solve" this problem[1] I have added the minimal amount of path name that is required in order to create a navigatable link. This solution looks like:
/** \test
* Perform a set of tests to verify foo & bar.
* located in:
* someFolder/myFile.cpp
*/
This would work for a file path like: C:/parentFolder/childFolder/someFolder/myFile.cpp
[1] The original question was focused around not having to type out the filepath into every comment block. This solution is a compromise between not having a special command and not having to write out the complete file path (which sometimes could be very long)

Issue with doxygen .dox files

I am trying to run doxygen on some source files for a project that I downloaded source files for. The files are located in the following directories:
doc/ - Documentation files, such as .dox files.
src/ - Source files
My settings in my doxygen.config file are:
INPUT = ../ .
FILE_PATTERNS = *.h *.dox *.dxx
When I run doxygen (doxygen doxygen.config), it generates all of the documentation from the .h files correctly, but it does not generate the mainpage correctly. I have a file titled intro.dox in the doc folder, with a command \mainpage Documentation Index, and a bunch of text, but doxygen is not using this to generate the main page.
What am I doing wrong?
There are (at least) two possible reasons for this:
You are not including the /doc directory in you INPUT list. Try modifying this to
INPUT = ../ . ../doc
Did you mean to write ../doc instead of ../? I am guessing that your doxygen.config file is in your src directory. If this is not the case can you make this clear in the question.
Doxygen requires that your documentation files (your .dox files) are plain text with your text wrapped with Doxygen C++ comments (i.e. /** ... */).
Without knowing where doxygen.config is located, and since you are using relative paths in INPUT, it is difficult to determine what might cause this, however since the files you are looking for are in parallel directories, it is possible that doxygen is not search recursively for your files. You may want to confirm that RECURSIVE is set to YES in doxygen.config.

Doxygen won't process main.cpp

So I'm new to using Doxygen and I was able to get it to work smoothly. I was able to document my classes and structs and it generates the HTML files perfectly. The issue I'm running into is it won't parse my main.cpp file. All the classes and structs have their own .h and .cpp files and they process fine. How do I get Doxygen to make the documentation for main.cpp? It doesn't have a .h file as this is where the program starts and ends. I wouldn't even know what to put in the .h file for main. I'm using Doxywizard in Windows.
Edit:
I put this in main and it generates a main page:
/**
#mainpage
This is a test application.
#author Alex
#date 10/21/2010
#version 1.0
*/
But then farther down the file where the function prototypes are I have this and it doesn't get parsed:
/**
#brief Error handler for the PDF writer.
It does nothing. It just has to exist.
*/
void error_handler (HPDF_STATUS error_no,
HPDF_STATUS detail_no,
void *user_data)
{
}
I put this at the top of main.cpp and it worked. Go figure.
/**
#file main.cpp
*/
If INPUT and FILE_PATTERNS are empty, it should search for *.cpp files (and many other patterns) in the current directory. (This from the doxygen manual.)
Since yours are empty, I expect one of two things is going on if you're not getting main.cpp documentation:
main.cpp is not in the current directory. To rule this out, make sure you're running doxygen from the same directory as both your config file and main.cpp.
There is a syntax error in your main.cpp documentation. These can be tricky to spot, as doxygen doesn't generally abort when it encounters an error - instead it just skips ahead. If this is the problem, comb through doxygen's output when you generate your docs line by line.
If neither of these ideas solve your problem, we might need more information. Output of ls -R, output of the doxygen run, etc. Good luck!
I did some research on this... From the doxygen manual :
Important: The documentation of global functions, variables, typedefs,
and enums will only be included in the
output if the file they are in is
documented as well.
There you go !