I have various matlab installations for Linux 64 bit, running Fedora 19/
For now, lets say I'm using MATLAB2010R.
I tried wiping my .matlab/ config and that didn't help.
>>>system('ls')
bash$ <hangs>
bash$ exit
foo
foobar
ans = 0
>>>
So I have to manually exit for the system call to return to the Matlab prompt.
This breaks various things, such as copyfile.
This is a dumb problem acutally...
From within matlab:
>>system('ls')
bash$ps Aux | grep user
we can see that I tcsh was called, then tcsh called a bash instance.
I set this up a long time ago, b/c I couldn't change my default shell very easily.
That is the whole problem...
Though question is quite old, I am still answering in the hope to help someone having same issue.
I had the same issue. I managed to solve this issue by uncommenting one line in .matlab7rc.sh file in directory.
open .matlab7rc.sh file and search for line
LDPATH_PREFIX='$MATLAB/sys/opengl/lib/$ARCH'
Above line is present three times in .matlab7rc.sh file for Matlab 2016. Uncomment all of them.
And it is also stated in above mentioned file as
To always use the OpenGL libraries shipped with MATLAB uncomment the next line.
This works like charm. Now, Matlab is exiting normally.
Related
I call the program myfoo.pl, my first line is #!/usr/bin/perl.
When run from command line myfoo.pl I get command not found.
again when run using perl myfoo.pl it runs and completes. Not all my perl programs have this problem some run just using (path)/source.pl I ran head -1 myfoo.pl and got a print of my first line. no indication of problems.
Looking at the limited information you gave, I would say you are probably missing permission executable on the file myfoo.pl. To which the solution is to do
chmod +x myfoo.pl
It could also be a path to binary problem, that the perl binary is not located in /usr/bin/perl. In which case you need to figure out where it is, with which perl or where perl.
I suppose it could also be that the file myfoo.pl is not in your current directory, which it needs to be. Because of path settings, you also may have to execute it with
$ ./myfoo.pl
Because . is part of your path variable.
It is impossible to say for sure, because you are not answering questions, however. So when you eventually get around to answering questions, we may have more answers.
I'm a Python/programming novice and this is probably an novice mistake, but I've scoured the internet for answers and have found none! I'm learning on a Rosalind module that's about opening data files. http://rosalind.info/problems/ini5/ I'm pretty sure I understand everything clearly, so I'm frustrated about my inability to do this simple task.
I'm using Python 3.6.2 and IDLE. The assignment is to simply open a .txt file and read a few lines.
I downloaded the .txt file to my working directory. Then, I opened up IDLE Shell and made sure I was in the right working directory (using ls & cd). I then opened a new IDLE .py file and wrote a script:
f = open('filename.txt', 'r')
f.readlines()[2]
I saved the script as p5.py. Then, I tried to run the script by calling F5. In the Shell, I got this message:
================ RESTART: /Users/liv/Desktop/Rosalind/p5.py =================
Is that an error? I think it's just a message from IDLE that IDLE has opened p5.py. Therein lies my problem, because now I have the wrong file open.
I started realizing that when I used the Shell and called it to print, and it came back with an empty string.
What am I doing wrong?? How do I get IDLE to open the filename.txt file? ...not the .py file.
The RESTART line means that IDLE has sent p5.py to Python to be run, which is exactly what you want and what you asked. Python should have then opened the text file, read it, retrieved the 3rd line, and stopped. Since p5.py has no output statements and does not raise any exceptions, you will not see anything. If you change the 2nd line to
print('line is ', f.readlines()[2])
then you should see something.
I got a problem when executing batch file commands through matlab. This batch file includes commands to run simulations in Adams. When I execute the batch file directly from DOS window, it works well. But if I use matlab to execute it (using command dos()), it gives error saying 'cannot check out the license for Adams'.
This confuses me: if the license is incorrect, it should not work no matter I execute the batch file directly in DOS or ask MATLAB to execute it. I also tried to execute other DOS commands through matlab using dos() and it worked well.
Does anyone know what the problem may be?
Such issues are commonly caused by some environment variables being changed or cleared by MATLAB. I have very similar experience on Linux and Mac OS X, where this causes havoc when using system or unix.
In Unix-like systems, MATLAB is started from a shell script where all of this happens. So you can either incorporate missing variables there or in the .matlab7rc.sh in your home directory (the latter is preserved when you upgrade MATLAB and it is much easier to use). I won't go into all the Unix details here.
An alternative workaround is to explicitly set those variables when you issue a system command (e.g. system('export variable=value ; ...')). It is quite a bit of work, but you can then use that MATLAB code on different computers with ease.
On Windows, I'm not completely sure about the exact location of the corresponding files (and whether MATLAB starts in quite a similar way as on Unix). But if they exist, you can probably find it in the MATLAB documentation.
Anyhow, the alternative fix should work here as well.
First you need to diagnose which system variables you need (likely a PATH or anything that has a name related to Adams).
To do so in Windows, run set from the Windows command prompt (cmd.exe) and from within MATLAB. Whatever differs in the output is a possible suspect for your problem.
To inspect just a single variable, you can use the command echo %variablename%.
I will assume that you have found that the suspect environment variable is missing and should be set to value.
The workaround fix is then to run your command in MATLAB as system('set suspect=value & ...') where you replace ... with your original command.
I use Matlab remotely via ssh, and would like to execute regions of code from an m-file in Emacs without having to cut and paste. How do I configure Emacs to do this?
I tried to follow the solution offered here: I wrote a script that connects to the server and opens Matlab. The script works when I run it in a terminal. I edited matlab.el as explained on that page. Now, if I'm editing my m-file in Emacs and try to start Matlab, I get a message that it can't execute my remoteMatlab.sh file, and that M-shell exited abnormally with code 1.
Thanks in advance for any help.
You can achieve this running a shell from within emacs, starting up your ssh and matlab session in it, and renaming the shell buffer from *term* or whatever to *MATLAB*. You can then use matlab-mode on a script file and run the code.
This is not exactly what you asked for but may achieve the same thing. You can use function dbstop, which allows you to set debug break points through code.
http://www.mathworks.com/help/techdoc/ref/dbstop.html#inputarg_location
I have a Perl program written by someone else. When I run it, it silently exits without writing anything to the logfile. Is there a way I can run this Perl program step by step, line by line by the interpreter and thus get to see where it terminates?
Yes, there is the Perl debugger which you can invoke with perl -d.
Documentation can be found in perldoc perldebug and perldoc perldebtut.
Probably the most useful commands would be:
s - step into current line.
n - step over current line.
r - step out of current function.
p <expr> - print the expression.
b <line|subnm> - sets a breakpoint
T - produce a stack trace.
c [<line|subnm>] - continue running with optional one-time breakpoint.
h - help (for other commands).
Hachi has the answer. Use the Perl debugger by running perl with the -d flag. For information on how to use the debugger past starting it, see the Perl Debugging Tutorial.
There is a Perl module called "ptkdb" which is a standalone Perl interactive debugger. It works using the Tcl/Tk GUI, so you'll need that, too.
Depending on your OS you'll need to add some required modules.
Invoke it using
perl -d:ptkdb <your script>
If running some Unix/Linux system, you also need an X server.
There are two ways. The first is the one which Hachi and llioin already gave which is using the command-line switch "-d".
Or use an IDE. I am tried and used Komodo IDE which works like charm.