I have this:
perl -pi -e 'print "code I want to insert\n" if $. == 2' *.php
which puts the line code I want to insert on the second line of the file, which is what I need done to every single PHP file
If I run it in a directory with both PHP files and non-PHP files it does the right thing, but only to one PHP file. I thought *.php would apply it to all PHP files, but it doesn't do it.
How can I write it so it will modify every PHP file in a directory? Bonus if there is an easy way to do this recursively through all directories. I don't mind running the Perl script for each directory as there aren't that many, but don't want to hand edit every single file.
The problem is that the file handle ARGV that Perl uses to read the files passed on the command line is never explicitly closed, so the line number $. just keeps incrementing after the end of the first file and never goes back to one.
Fix this by closing ARGV when it has reached end of file. Perl will reopen it to read the next file in the list, and so reset $.
perl -i -pe 'print "code I want to insert\n" if $. == 2; close ARGV if eof' *.php
If you can use sed, this should work:
sed -si '2i\CODE YOU WANT TO INSERT' *.php
To do it recursively, you might try:
find -name '*.php' -execdir sed -si '2i\CODE YOU WANT TO INSERT' '{}' +
Using File::Find.
Note, I've included 3 sanity checks to verify that things are actually being processed they way that you want.
Initially the script will just print out the found files until you comment out the bare return.
Then the script will save backups unless you uncomment the unlink statement.
Finally, the script will only process a single file until you comment out the exit statement.
These three checks are just so you can verify that everything is working as you desire before editing a whole directory tree.
use strict;
use warnings;
use File::Find;
my $to_insert = "code I want to insert\n";
find(sub {
return unless -f && /\.php$/;
print "Edit $File::Find::name\n";
return; # Comment out once satisfied with found files
local $^I = '.bak';
local #ARGV = $_;
while (<>) {
print $to_insert if $. == 2 && $_ ne $to_insert;
print;
}
# unlink "$_$^I"; # Uncomment to delete backups once certain that first file is processed correctly.
exit; # Comment out once certain that first file is processed correctly
}, '.')
Related
I need update specific line in file.
I use regular expression. Finally, I run over next line.
The file dog2cat contains:
This example
The dog is drinking.
It is drinking milk.
My code:
open(FILE,"+<dog2cat");
while(<FILE>)
{
my $line=$_;
if($line =~ /dog/)
{
$line =~ s/dog/cat/;
print FILE $line;
}
}
close FILE;
Finally the file contain
This example
The dog is drinking.
The cat is drinking.
I want to get
This example
The cat is drinking.
It is drinking milk.
For simple file update tasks, you can use a Perl "one-liner":
perl -i -pe 's/dog/cat/g' dogcat.txt
The -i says to update the file you're working on (you can add an extension to it if you want to write to a new file. For example, -i.bak will write to a file named dogcat.txt.bak).
The -p says iterate over each line, and print it out (with -i, print back to the file).
-e executes whatever is between the quotes on each line in the file.
Open a second file for output, print to that one. Or print to the screen instead of another file, and when you run your script pipe the output into a file.
I found some command line with Perl that inserts headers into my files without going through the tedious process of inserting them one by one. Can someone walk me through the Perl aspect of this command line? I'm new to this and can't seem to find the right explanations for what I wrote.
cat header.txt | perl -0 -i -pe 'BEGIN{$h = <STDIN>}; print $h' 1*
-e
rather than provide a script in a xxxx.pl file, provide it on the command line
-p
makes it iterate over filename arguments somewhat like sed but also prints the contents of $_ at the end of the script.
the two above are combined in -pe
-i
indicate you want to edit the file in place and write the output to the same file. In practice, Perl renames the input file and reads from this renamed version while writing to a new file with the original name
-0
redefines the end of record character (\n by default) so that you can read the entire input file as a single line
1*
is the command line argument to your script, so I guess you are modifying any file with a name that starts with 1 (you could have used *.c, or whatever depending on the type of files you are trying to modify)
print $h
prints the variable $h that is the "main" of your script. if it was initialized with the content of the header file (the intent of this one-liner) then it will print the header file
BEGIN{ some code here }
this is stuff you execute before the script starts. this is where I'm stumped. this doesn't seem like valid perl code
so basically:
this will supposedly slurp the entire header file (because of -0) in the BEGIN block and store it in the variable $h
iterate over all the files specified by the wildcards at the end of the command line
for each file: print the header (print $h) then print hte file itself (because of -pe)
so it's equivalent to spelling the script out:
$h = gets content of the entire header file
while (<>){ #loop implied by -pe, iterates over all the 1* files
# the main contents of the "-e" script are inserted below as part of executing -pe
print h$; #print the header we saved
print $_; # implied by -pe, and since we are using -0, this prints the entire content in one shot
# end of the "-e" script. again it was a single print $h statement, the second print is implied by -pe
}
It's a bit hard to explain, take a look at the perlrun documentation for details (run man perlrun).
This is not 100% complete explanation because I don;t think the BEGIN block is right. I tried it on my ubuntu machine and it complained about its syntax too
Here's something similar, with an explanation. The program in the question doesn't run on my mac.
I needed to add the #nullable disable directive to the top of all my csharp files as part of migrating to nullable reference types.
perl -w -i -p -0777 -e 's/^/#nullable disable\n\n/' $(find . -iname '*.cs')
-w enable warnings
-i edit files in place
-p read each file block by block, printing each block after applying a perl expression. the default block size is one line
-0777 changes the default block size to the entire file
-e the perl expression to execute
The final argument uses shell command substitution to create a list of files. It passes that list of file paths to the perl command. The find command searches for files that end in .cs.
The perl program is a single substitution command. It matches the very beginning of the block and replaces (prepends, really) with "#nullable disable" and a couple new-lines.
context: I'm a beginner in Perl and struggling, please be patient, thanks.
the question: there is a one-liner that seems to do the job I want (in a cygwin console it does fine on my test file). So now I would need to turn it into a script, but I can't manage that unfortunately.
The one-liner in question is provided in the answer by Aki here Delete lines in perl
perl -ne 'print unless /HELLO/../GOODBYE/' <file_name>
Namely I would like to have a script that opens my file "test.dat" and removes the lines between some strings HELLO and GOODBYE. Here is what I tried and which fails (the path is fine for cygwin):
#!/bin/perl
use strict;
use warnings;
open (THEFILE, "+<test.dat") || die "error opening";
my $line;
while ($line =<THEFILE>){
next if /hello/../goodbye/;
print THEFILE $line;
}
close (THEFILE);
Many thanks in advance!
Your one-liner is equivalent to the following
while (<>) {
print unless /HELLO/../GOODBYE/;
}
Your code does something quite different. You should not attempt to read and write to the same file handle, that usually does not do what you think. When you want to quickly edit a file, you can use the -i "in-place edit" switch:
perl -ni -e 'print unless /HELLO/../GOODBYE/' file
Do note that changes to the file are irreversible, so you should make backups. You can use the backup option for that switch, e.g. -i.bak, but be aware that it is not flawless, as running the same command twice will still overwrite your backup (by saving to the same file name twice).
The simplest and safest way to do it, IMO, is to simply use shell redirection
perl script.pl file.txt > newfile.txt
While using the script file I showed at the top.
I currently have an issue with reading files in one directory.
I need to take all the fastq files in a file and run the script for each file then put new files in an ‘Edited_sequences’ folder.
The one script I had is
perl -ne '$i++; if($i<80001){print}' BM2003_TCCCAGAACAAC_L001_R1_001.fastq > ./Edited_sequences/BM2003_TCCCAGAACAAC_L001_R1_001.fastq
It takes the first 80000 lines in one fastq file then outputs the result.
Now for example I have 2000 fastq files, then I need to copy and paste for 2000 times.
I know there is a glob command suit for this situation but I just do not know how to deal with that.
Please help me out.
You can use perl to do copy/paste for you, first argument *.fastq are all fastq files, and second ./Edited_sequences is target folder for new files,
perl -e '$d=pop; `head -8000 "$_" > "$d/$_"` for #ARGV' *.fastq ./Edited_sequences
glob gets you an array of filenames matching a particular expression. It's frequently used with <> brackets, a lot like reading input (you can think of it as reading files from a directory).
This is a simple example that will print the names of every ".fastq" file in the current directory:
print "$_\n" for <*.fastq>;
The important part is <*.fastq>, which gives us an array of filenames matching that expression (in this case, a file extension). If you need to change which directory your Perl script is working in, you can use chdir.
From there, we can process your files as needed:
while (my $filename = <*.fastq>) {
open(my $in, '<', $filename) or die $!;
open(my $out, '>', "./Edited_sequences/$filename") or die $!;
for (1..80000) {
my $line = <$in>;
print $out $line;
}
}
You have two choices:
Use Perl to read in the 2000 files and run it as part of your program
Use the Shell to pass each of those 2000 file to your command line
Here's the bash alternative:
for file in *.fastq
do
perl -ne '$i++; if($i<80001){print}' "$file" > "./Edited_sequences/$file"
done
Your same Perl script, but with the shell finding each file. This should work and not overload the command line. The for loop in bash, if handed a glob can expand them correctly.
However, I always recommend that you don't actually execute the command, but echo the resulting commands into a file:
for file in *.fastq
do
echo "perl -ne '\$i++; if(\$i<80001){print}' \
\"$file\" > \"./Edited_sequences/$file\"" >> myoutput.txt
done
Then, you can look at myoutput.txt to make sure it looks good before you actually do any real harm. Once you've determined that myoutput.txt is a good file, you can execute that as a shell script:
$ bash myoutput.txt
How do I run a Perl script on multiple input files with the same extension?
perl scriptname.pl file.aspx
I'm looking to have it run for all aspx files in the current directory
Thanks!
In your Perl file,
my #files = <*.aspx>;
for $file (#files) {
# do something.
}
The <*.aspx> is called a glob.
you can pass those files to perl with wildcard
in your script
foreach (#ARGV){
print "file: $_\n";
# open your file here...
#..do something
# close your file
}
on command line
$ perl myscript.pl *.aspx
You can use glob explicitly, to use shell parameters without depending to much on the shell behaviour.
for my $file ( map {glob($_)} #ARGV ) {
print $file, "\n";
};
You may need to control the possibility of a filename duplicate with more than one parameter expanded.
For a simple one-liner with -n or -p, you want
perl -i~ -pe 's/foo/bar/' *.aspx
The -i~ says to modify each target file in place, and leave the original as a backup with an ~ suffix added to the file name. (Omit the suffix to not leave a backup. But if you are still learning or experimenting, that's a bad idea; removing the backups when you're done is a much smaller hassle than restoring the originals from a backup if you mess something up.)
If your Perl code is too complex for a one-liner (or just useful enough to be reusable) obviously replace -e '# your code here' with scriptname.pl ... though then maybe refactor scriptname.pl so that it accepts a list of file name arguments, and simply use scriptname.pl *.aspx to run it on all *.aspx files in the current directory.
If you need to recurse a directory structure and find all files with a particular naming pattern, the find utility is useful.
find . -name '*.aspx' -exec perl -pi~ -e 's/foo/bar/' {} +
If your find does not support -exec ... + try with -exec ... \; though it will be slower and launch more processes (one per file you find instead of as few as possible to process all the files).
To only scan some directories, replace . (which names the current directory) with a space-separated list of the directories to examine, or even use find to find the directories themselves (and then perhaps explore -execdir for doing something in each directory that find selects with your complex, intricate, business-critical, maybe secret list of find option predicates).
Maybe also explore find2perl to do this directory recursion natively in Perl.
If you are on Linux machine, you could try something like this.
for i in `ls /tmp/*.aspx`; do perl scriptname.pl $i; done
For example to handle perl scriptname.pl *.aspx *.asp
In linux: The shell expands wildcards, so the perl can simply be
for (#ARGV) {
operation($_); # do something with each file
}
Windows doesn't expand wildcards so expand the wildcards in each argument in perl as follows. The for loop then processes each file in the same way as above
for (map {glob} #ARGV) {
operation($_); # do something with each file
}
For example, this will print the expanded list under Windows
print "$_\n" for(map {glob} #ARGV);
You can also pass the path where you have your aspx files and read them one by one.
#!/usr/bin/perl -w
use strict;
my $path = shift;
my #files = split/\n/, `ls *.aspx`;
foreach my $file (#files) {
do something...
}