I have made a 3D delaunay triangulation in matlab with some defined points. Considering it a consistent triangulation (I mean with fixed edges and angles) I want to move this triangulatoin in the space and then compute the location of one point by giving other points' location.
I have searched a lot on the net but I couldn't find a proper solution for this problem. Actually there isn't any similar example.
Related
I'm working on a science project. I have a list of xyz-coordinates of voronoi diagram vertices, and a list of points that create my protein's convex-hull (from triangulation). Now some of the vertices lie quite far from the hull and I'd like to filter them out. How can I do it in c++ ? For now it doesn't have to be super optimised, I'm only focused on removing those points.
visualization
I was also thinking to check if a line from voronoi vertex(red crosses) to center of protein(pink sphere) is intersecting with hull face at any point, but I'm not sure how to achive that.
I've read that you can check if a point is inside a polygon by counting the times an infinite line from the point is crossing the hull, but that was for two dimensions. Can similar approach be implemented to suit my needs ?
https://www.geeksforgeeks.org/how-to-check-if-a-given-point-lies-inside-a-polygon/
Let's start with the two-dimensional case. You can find the solution to that on CS.SX:
Determine whether a point lies in a convex hull of points in O(logn)
The idea is that each two consecutive points on the convex hull define a triangular slice of the plane (to some internal point of the hull); you can find the slice in which your point is located, and check whether it's closer to the internal point than the line segment bounding the slide.
For the three-dimensional case, I'm guessing you should be able to do something similar, but the search for the 3 points forming the relevant triangle might be a little tricky. In particular, it would also depend on how the convex hull is represented - as in the 2-d case the convex hull is just a sequence of consecutive points on a cycle.
I know this doesn't quite solve your problem but it's the best I've got given what you've written...
Context: I want to create an interactive heatmap with areas separated by a ZIP code. I've found no way of displaying it directly (i.e. using Google Maps or OSM), so I want to create curves or lines that are separating those areas, and visualize it in maps.
I have a set of points, represented by their coordinates and their according class (ZIP code). I want to get a curve separating them. The problem is that these points are not linearly separable.
I tried to use softmax regression, but that doesn't work well with non-linearly separable classes. The only methods I know which are able to separate non-linearly are nearest neighbors and neural networks. But such classifiers only classify, they don't tell me the borders between classes.
Is there a way to get the borders somehow?
If you have a dense cloud of known points within each Zip code with coordinates [latitude. longitude, zip code], using machine learning to find the boundary enclosing those points sounds like overkill.
You could probably get a good approximation of the boundary by using computational geometry, e.g finding the 2D convex hull of each Zip code's set of points using the Matlab convhull function
K = convhull(X,Y)
The result K would be a vector of points enclosing the input X, Y vector of points, that could be used to draw a polygon.
The only complication would be what coordinate system to work in, you might need to do a bit of work going between (lat, lon) and map (x,y) coordinates. If you do not have the Matlab Mapping Toolbox, you could look at the third party library M_Map M_Map home page, which offers some of the same functionality.
Edit: If the cloud of points for Zip codes has a bounding region that is non convex, you may need a more general computational geometry technique to find a better approximation to the bounding region. Performing a Voronoi tesselation of the region, as suggested in the comments, is one such possibility.
I have a multiple plants in a single binary image. How would I identify each leaf in the image assuming that each leaf is approximately elliptical?
example input: http://i.imgur.com/BwhLVmd.png
I was thinking a good place to start would be finding the tip of each leaf and then getting the center of each plant. Then I could fit the curves starting from the tip and then going to the center. I've been looking online and saw something involving a watershed method, but I do not know where to begin with that idea.
You should be aware that these things are tricky to get working robustly - there will always be a failure case.
This said, I think your idea is not bad.
You could start as follows:
Identify the boundary curve of each plant (i.e. pixels with both foreground and background in their neighbourhood).
Compute the centroid of each plant.
Convert each plant boundary to a polar coordinate system, with the centroid as the origin. This amounts to setting up a coordinate system with the distance of each boundary curve point on the Y axis and the angle on the X axis.
In this representation of the boundary curve, try to identify maxima; these are the tips of the leaves. You will probably need to do some smoothing. Use the parts of the curve before and after the maxima the start fitting your ellipses or some other shape.
Generally, a polar coordinate system is always useful for analysing stuff thats roughly circular.
To fit you ellipses, once you have a rough initial position, I would probably try an EM-style approach.
I would do something like this (I is your binary image)
I=bwmorph(bwmorph(I, 'bridge'), 'clean');
SK=bwmorph(I, 'skel', Inf);
endpts = bwmorph(SK,'endpoints');
props=regionprops(I, 'All');
And then connect every segment from the centroids listed in props.centroid to the elements of endpts that should give you your leaves (petals?).
A bit of filtering is probably necessary, bwmorph is your friend. Have fun!
I have a 3D point cloud that I've transformed into a Delaunay triangulation using Matlab's function DelaunayTri. Now I have a test point in 3D and want to compute, in Matlab, the smallest distance between this point and the triangulation.
So far, I've thought of using the nearestNeighbor(...) member function of the DelaunayTri class in Matlab to find the point in the triangulation closest to my test point and then computing the distance between them. That is something but it is not what I really want.
The closest point on the triangulation to my test point is, in general, not a vertex of the triangulation but somewhere on the face of a triangle. How can I find this point?
Thank you!!!
I've written codes for these things, but they are not on the File Exchange. I can be convinced to give them out by direct mail though.
It is relatively easy to find the distance to a convex hull, but not trivial. A delaunay tessellation is bounded by the convex hull anyway. So you can convert that tessellation into the convex hull easily enough, or just use the convex hull. Note that a convex hull is often a terribly poor approximation for many purposes, especially if you are using this for color mapping, which is perhaps the most common thing I see this used for. In that case, an alpha shape is a far better choice. Alpha shapes also will have a triangulated boundary surface, though in general it will not be convex.
So, to find the nearest point on a convex triangulation:
Convert to the convex boundary surface, i.e., the convex hull. This reduces to finding those triangles which are not shared between pairs of tetrahedra. Internal facets will always appear exactly twice in the list of all facets. This trick also works for non-convex tessellations of course, so for alpha shapes.
Compute a bounding circumcircle for each triangular surface facet. This allows you to know when to stop checking facets.
Get the distances to each point on the surface. Sort each facet by the distance to the nearest point in that facet. Start by looking at the nearest facet in that list.
Compute the distance to the apparently nearest facet found in step 3. A simple solution is found by least distance programming (LDP), which can be converted to a constrained linear least squares. Lawson & Hanson have an algorithm for this.
Repeat step 4 until the current best distance found is less than the distance, comparing it to any of the circumcircles from step 2. This loop will be quite short really, at least for a convex hull. For a more general non-convex hull from an alpha shape, it may take more time.
You can also reduce the search space a bit by excluding the facets from your search that point AWAY from the point in question. Use those facet normals for this test.
I wrote the tool point2trimesh for this problem. It's kind of a "brute force" solution which works also for non-convex surfaces.
I got a point set after executing SIFT algorithm.Now I want to find the external irregular shape of those points.Is there anyone knowing the relevant functions in Matlab? Notice that I don't want the convex hall.Thank you!
If you want convex hull, (unclear based on your comment... you can edit questions btw), look up convhull.
If you don't want convex hull, a Delaunay triangulation will probably get you started since the result captures both the convex hull of the points, but also the internal structure such that you may be able to remove some edges from the outside of the returned triangulation.