I am getting the value of kurtosis for only 251 blocks as i divided images into blocks i mnot getting what is wrong actually it should show it for 252 blocks please review the code thanks in advance
clear all;
close all;
x = imread('image009.png');
rgb = imresize(x,0.5);
green = rgb(:,:,2);
[m,n]=size(green);
imnum=input('enter image number');
g=1;
q=1;
scaler=36;
scalec=37.5;
bno=1;
g=1;
for i=1:scaler:(m-scaler)
if((i==1)||(i==(m-scaler))
continue;
end
for j=1:scalec:(n-scalec)
if((j==1)||(j==(n-scalec)))
continue;
end
tbpcolr = imcrop(green,[j,i,scalec,scaler])
ip=input('press some key');
mgreen = mean2(tbpcolr);
stats = hisfeatures(tbpcolr);
Mean(1,g) = stats(1)
Variance(1,g) =stats(2)
Skewness(1,g) =stats(3)
Kurtosis(1,g)=stats(4)
Energy(1,g) =stats(5)
Entropy(1,g) =stats(6)
Kurtosis = Kurtosis(~isnan(Kurtosis))
Entropy = Entropy(~isnan( Entropy))
Skewness = Skewness(~isnan( Skewness))
g=g+1;
bno=bno+1;
end
end
blockno = [];
for i = 1:252
blockno(i)=i;
end
for i = 1:252
result_his=vertcat(Energy,Mean,Variance,Kurtosis,Skewness,Entropy,blockno);
end
result_his=result_his.'
Removing cells with NaN would destroy the matrix structure. Removing whole rows that contain NaN would discard real data. Instead, the Statistics Toolbox has a variety of functions that are similar to other MATLAB functions, but that treat NaN values as missing and therefore ignore them in the calculations.
Related
Below is a code, which works fine without function/function handles. However, I have to write a function so that I can use optimization function of "lsqcurvefit" in MATLAB and optimize parameters constant(1) and constant(2).
L=zeros(n,length(S)); % Height of elements
L(:,1)=Linitial; % Height of elements for day zero
for jj=1:length(S)
if jj==1
continue
end
for j=1:n % n is 101 (previously defined...)
L(j,jj) = #(constant, i_dt) L(j,jj-1) - (i_dt(j,jj).*constant(1).*((L(j,jj-1)./hs)-1)^constant(2)); %*****
end
end
height_pred = #(constant,i_dt) sum(L); %heigh_pred(1) is known and previously defined
options = optimoptions('lsqcurvefit','FinDiffType','central',...
'TolFun',1e-10);
constant = lsqcurvefit(height_pred,constant0,i_dt,height_meas,lb,ub,options);
When I run above code, I receive the error "Conversion to double from function_handle is not possible" for line with 5 stars (*****).
If I remove function handle and instead write a function at the end of my code like below:
L=zeros(n,length(S)); % Height of elements
L(:,1)=Linitial; % Height of elements for day zero
for jj=1:length(S)
for j=1:n % n is 101 (previously defined...)
L(j,jj) = Nelfun(j,jj);
end
end
height_pred = #(constant,i_dt) sum(L); %heigh_pred(1) is known and previously defined
options = optimoptions('lsqcurvefit','FinDiffType','central',...
'TolFun',1e-10);
constant = lsqcurvefit(height_pred,constant0,i_dt,height_meas,lb,ub,options);
function L = Nelfun(constant,i_dt)
for jj=1:145
if jj==1
L(:,1)=0.0187600000000000;
continue
end
for j=1:101
L(j,jj-1);
L(j,jj) = L(j,jj-1) - (i_dt(j,jj).*constant(1).*((L(j,jj-1)./hs)-1)^constant(2)); %*****
end
end
end
I receive the error
"Index exceeds matrix dimensions" for line with (*****).
Size of matrix i_dt is (101,145), L is (101,145), height_meas(1,145), and height_pred(1,145).
L(j,jj) for jj==1 is known but then should be calculated and optimized for L(:,2) to L(:,145).
***
Thanks to Praveen, "Index exceeds matrix dimensions" issue is resolved, but now I receive the error
"Error using snls (line 183)
Finite difference Jacobian at initial point contains Inf or NaN values. lsqcurvefit cannot continue."
for below code:
lb = [0.000000000001,0.05]; ub = [1,50]; constant0 = [1.06e-09,15.2];
height_pred = #(constant,i_dt) sum(Nelfun(constant,i_dt));
options = optimoptions('lsqcurvefit','FinDiffType','central',...
'TolFun',1e-10);
constant = lsqcurvefit(height_pred,constant0,i_dt,height_meas,lb,ub,options);
function L = Nelfun(constant,i_dt)
L=zeros(size(i_dt));
n=101; % number of nodes
ei=2.05613504572765;
e0=ei.*ones(n,1);
Hsolid=0.613847219422639;
hs = Hsolid./(n-1);
for JJ=1:size(i_dt,2)
if JJ==1
for j=1:n
Linitial0=hs.*(1+e0);
Linitial0(1)=0;
end
L(:,JJ) = Linitial0;
continue
end
for J=1:size(i_dt,1)
L(J,JJ) = L(J,JJ-1) - (i_dt(J,JJ).*constant(1).*((L(J,JJ-1)./hs)-1)^constant(2));
end
end
end
In the first case, you can't make an array of function handles. you can use cell arrays but I can't understand why you need it.
Let's work your second case.
%I don't know what is hs, I assume it a scalar
hs=myhs;
%call the Nelfun in your function handle
height_pred = #(constant,i_dt) Nelfun(constant,i_dt,hs);
options = optimoptions('lsqcurvefit','FinDiffType','central',...
'TolFun',1e-10);
% Constant0 should be 2 element array
constant0=[0,0];
constant = lsqcurvefit(height_pred,constant0,i_dt,height_meas,lb,ub,options);
function L = Nelfun(constant,i_dt,hs)% why hs is not passed
L=zeros(size(i_dt)); % Always initialize before filling it up
for jj=1:size(i_dt,2) %use adaptive indexing
if jj==1
L(:,jj)=0.0187600000000000;
continue
end
for j=1:size(i_dt,1) %use adaptive indexing
L(j,jj) = L(j,jj-1) - (i_dt(j,jj).*constant(1).*((L(j,jj-1)./hs)-1)^constant(2));
end
end
What I want to is:
I got folder with 32 txt files and 1 excle file, each file contain some data in two columns: time, level.
I already managed to pull the data from the folder and open each file in Matlab and get the data from it. What I need to do is create plot for each data file.
each of the 32 plots should have:
Change in average over time
Standard deviation
With both of this things I am straggling can't make it work.
also I need to make another plot this time the plot should have the average over each minute from all the 32 files.
here is my code until now:
clc,clear;
myDir = 'my path';
dirInfo = dir([myDir,'*.txt']);
filenames = {dirInfo.name};
N = numel(filenames);
data=cell(N,1);
for i=1:N
fid = fopen([myDir,filenames{i}] );
data{i} = textscan(fid,'%f %f','headerlines',2);
fclose(fid);
temp1=data{i,1};
time=temp1{1};
level=temp1{2};
Average(i)=mean(level(1:find(time>60)));
AverageVec=ones(length(time),1).*Average(i);
Standard=std(level);
figure(i);
plot(time,level);
xlim([0 60]);
hold on
plot(time, AverageVec);
hold on
plot(time, Standard);
legend('Level','Average','Standard Deviation')
end
the main problam with this code is that i get only average over all the 60 sec not moving average, and the standard deviation returns nothing.
few things you need to know:
*temp1 is 1x2 cell
*time and level are 22973x1 double.
Apperently you need an alternative to movmean and movstd since they where introduced in 2016a. I combined the suggestion from #bla with two loops that correct for the edge effects.
function [movmean,movstd] = moving_ms(vec,k)
if mod(k,2)==0,k=k+1;end
L = length(vec);
movmean=conv(vec,ones(k,1)./k,'same');
% correct edges
n=(k-1)/2;
movmean(1) = mean(vec(1:n+1));
N=n;
for ct = 2:n
movmean(ct) = movmean(ct-1) + (vec(ct+n) - movmean(ct-1))/N;
N=N+1;
end
movmean(L) = mean(vec((L-n):L));
N=n;
for ct = (L-1):-1:(L-n)
movmean(ct) = movmean(ct+1) + (vec(ct-n) - movmean(ct+1))/N;
N=N+1;
end
%mov variance
movstd = nan(size(vec));
for ct = 1:n
movstd(ct) = sum((vec(1:n+ct)-movmean(ct)).^2);
movstd(ct) = movstd(ct)/(n+ct-1);
end
for ct = n+1:(L-n)
movstd(ct) = sum((vec((ct-n):(ct+n))-movmean(ct)).^2);
movstd(ct) = movstd(ct)/(k-1);
end
for ct = (L-n):L
movstd(ct) = sum((vec((ct-n):L)-movmean(ct)).^2);
movstd(ct) = movstd(ct)/(L-ct+n);
end
movstd=sqrt(movstd);
Someone with matlab >=2016a can compare them using:
v=rand(1,1E3);m1 = movmean(v,101);s1=movstd(v,101);
[m2,s2] = moving_ms(v,101);
x=1:1E3;figure(1);clf;
subplot(1,2,1);plot(x,m1,x,m2);
subplot(1,2,2);plot(x,s1,x,s2);
It should show a single red line since the blue line is overlapped.
I am pretty new to Matlab and encountered a problem when working with images.
I want to get a pixel that is in a specific colour (blue) in the following image:
image
My current code looks something like this:
function p = mark(image)
%// display image I in figure
imshow(image);
%// first detect all blue values higher 60
high_blue = find(image(:,:,3)>60);
%cross elements is needed as an array later on, have to initialize it with 0
cross_elements = 0;
%// in this iteration the marked values are reduced to the ones
%where the statement R+G < B+70 applies
for i = 1:length(high_blue)
%// my image has the size 1024*768, so to access the red/green/blue values
%// i have to call the i-th, i+1024*768-th or i+1024*768*2-th position of the "array"
if ((image(high_blue(i))+image(high_blue(i)+768*1024))<...
image(high_blue(i)+2*768*1024)+70)
%add it to the array
cross_elements(end+1) = high_blue(i);
end
end
%// delete the zero element, it was only needed as a filler
cross_elements = cross_elements(cross_elements~=0);
high_vector = zeros(length(cross_elements),2);
for i = 1:length(cross_elements)
high_vector(i,1) = ceil(cross_elements(i)/768);
high_vector(i,2) = mod(cross_elements(i), 768);
end
black = zeros(768 ,1024);
for i = 1:length(high_vector)
black(high_vector(i,2), high_vector(i,1)) = 1;
end
cc = bwconncomp(black);
a = regionprops(cc, 'Centroid');
p = cat(1, a.Centroid);
%// considering the detection of the crosses:
%// RGB with B>100, R+G < 100 for B<150
%// consider detection in HSV?
%// close the figure
%// find(I(:,:,3)>150)
close;
end
but it is not optimized for Matlab, obviously.
So i was wondering if there was a way to search for pixels with specific values,
where the blue value is larger than 60 (not hard with the find command,
but at the same time the values in the red and green area not too high.
Is there a command I am missing?
Since English isn't my native language, it might even help if you gave me some suitable keywords for googling ;)
Thanks in advance
Based on your question at the end of the code, you could get what you want in a single line:
NewImage = OldImage(:,:,1) < SomeValue & OldImage(:,:,2) < SomeValue & OldImage(:,:,3) > 60;
imshow(NewImage);
for example, where as you see you provide a restriction for each channel using logical operators, that you can customize of course (eg. using | as logical OR). Is this what you are looking for? According to your code you seem to be looking for specific regions in the image like crosses or coins is that the case? Please provide more details if the code I gave you is completely off the track :)
Simple example:
A = imread('peppers.png');
B = A(:,:,3)>60 & A(:,:,2)<150 & A(:,:,1) < 100;
figure;
subplot(1,2,1);
imshow(A);
subplot(1,2,2)
imshow(B);
Giving this:
My code works in the following manner:
1.First, it obtains several images from the training set
2.After loading these images, we find the normalized faces,mean face and perform several calculation.
3.Next, we ask for the name of an image we want to recognize
4.We then project the input image into the eigenspace, and based on the difference from the eigenfaces we make a decision.
5.Depending on eigen weight vector for each input image we make clusters using kmeans command.
Source code i tried:
clear all
close all
clc
% number of images on your training set.
M=1200;
%Chosen std and mean.
%It can be any number that it is close to the std and mean of most of the images.
um=60;
ustd=32;
%read and show images(bmp);
S=[]; %img matrix
for i=1:M
str=strcat(int2str(i),'.jpg'); %concatenates two strings that form the name of the image
eval('img=imread(str);');
[irow icol d]=size(img); % get the number of rows (N1) and columns (N2)
temp=reshape(permute(img,[2,1,3]),[irow*icol,d]); %creates a (N1*N2)x1 matrix
S=[S temp]; %X is a N1*N2xM matrix after finishing the sequence
%this is our S
end
%Here we change the mean and std of all images. We normalize all images.
%This is done to reduce the error due to lighting conditions.
for i=1:size(S,2)
temp=double(S(:,i));
m=mean(temp);
st=std(temp);
S(:,i)=(temp-m)*ustd/st+um;
end
%show normalized images
for i=1:M
str=strcat(int2str(i),'.jpg');
img=reshape(S(:,i),icol,irow);
img=img';
end
%mean image;
m=mean(S,2); %obtains the mean of each row instead of each column
tmimg=uint8(m); %converts to unsigned 8-bit integer. Values range from 0 to 255
img=reshape(tmimg,icol,irow); %takes the N1*N2x1 vector and creates a N2xN1 matrix
img=img'; %creates a N1xN2 matrix by transposing the image.
% Change image for manipulation
dbx=[]; % A matrix
for i=1:M
temp=double(S(:,i));
dbx=[dbx temp];
end
%Covariance matrix C=A'A, L=AA'
A=dbx';
L=A*A';
% vv are the eigenvector for L
% dd are the eigenvalue for both L=dbx'*dbx and C=dbx*dbx';
[vv dd]=eig(L);
% Sort and eliminate those whose eigenvalue is zero
v=[];
d=[];
for i=1:size(vv,2)
if(dd(i,i)>1e-4)
v=[v vv(:,i)];
d=[d dd(i,i)];
end
end
%sort, will return an ascending sequence
[B index]=sort(d);
ind=zeros(size(index));
dtemp=zeros(size(index));
vtemp=zeros(size(v));
len=length(index);
for i=1:len
dtemp(i)=B(len+1-i);
ind(i)=len+1-index(i);
vtemp(:,ind(i))=v(:,i);
end
d=dtemp;
v=vtemp;
%Normalization of eigenvectors
for i=1:size(v,2) %access each column
kk=v(:,i);
temp=sqrt(sum(kk.^2));
v(:,i)=v(:,i)./temp;
end
%Eigenvectors of C matrix
u=[];
for i=1:size(v,2)
temp=sqrt(d(i));
u=[u (dbx*v(:,i))./temp];
end
%Normalization of eigenvectors
for i=1:size(u,2)
kk=u(:,i);
temp=sqrt(sum(kk.^2));
u(:,i)=u(:,i)./temp;
end
% show eigenfaces;
for i=1:size(u,2)
img=reshape(u(:,i),icol,irow);
img=img';
img=histeq(img,255);
end
% Find the weight of each face in the training set.
omega = [];
for h=1:size(dbx,2)
WW=[];
for i=1:size(u,2)
t = u(:,i)';
WeightOfImage = dot(t,dbx(:,h)');
WW = [WW; WeightOfImage];
end
omega = [omega WW];
end
% Acquire new image
% Note: the input image must have a bmp or jpg extension.
% It should have the same size as the ones in your training set.
% It should be placed on your desktop
ed_min=[];
srcFiles = dir('G:\newdatabase\*.jpg'); % the folder in which ur images exists
for b = 1 : length(srcFiles)
filename = strcat('G:\newdatabase\',srcFiles(b).name);
Imgdata = imread(filename);
InputImage=Imgdata;
InImage=reshape(permute((double(InputImage)),[2,1,3]),[irow*icol,1]);
temp=InImage;
me=mean(temp);
st=std(temp);
temp=(temp-me)*ustd/st+um;
NormImage = temp;
Difference = temp-m;
p = [];
aa=size(u,2);
for i = 1:aa
pare = dot(NormImage,u(:,i));
p = [p; pare];
end
InImWeight = [];
for i=1:size(u,2)
t = u(:,i)';
WeightOfInputImage = dot(t,Difference');
InImWeight = [InImWeight; WeightOfInputImage];
end
noe=numel(InImWeight);
% Find Euclidean distance
e=[];
for i=1:size(omega,2)
q = omega(:,i);
DiffWeight = InImWeight-q;
mag = norm(DiffWeight);
e = [e mag];
end
ed_min=[ed_min MinimumValue];
theta=6.0e+03;
%disp(e)
z(b,:)=InImWeight;
end
IDX = kmeans(z,5);
clustercount=accumarray(IDX, ones(size(IDX)));
disp(clustercount);
Running time for 100 images:Elapsed time is 103.947573 seconds.
QUESTIONS:
1.It is working fine for M=50(i.e Training set contains 50 images) but not for M=1200(i.e Training set contains 1200 images).It is not showing any error.There is no output.I waited for 10 min still there is no output.What is the problem?Where i was wrong?
To answer your second question, you can simply 'save' any generated variable as a .mat file in your working directory (Current folder) which can be accessed later. So in your code, if the 'training eigenfaces' is given by the variable 'u', you can use the following:
save('eigenface.mat','u')
This creates a .mat file with the name eigenface.mat which contains the variable 'u', the eigenfaces. Note that this variable is saved in your Current Folder.
In a later instance when you are trying out with your test data, you can simply 'load' this variable:
load('eigenface.mat')
This automatically loads 'u' into your workspace.
You can also save additional variables in the same .mat file if necessary
save('eigenface.mat','u','v'...)
The answer to the first question is that the code is simply not done running yet. Vectorizing the code (instead of using a for loop), as suggested in the comment section above can improve the speed significantly.
[EDIT]
Since the images are not very big, the code is not significantly slowed down by the first for loop. You can improve the performance of the rest of the code by vectorizing the code. Vectorized operations are faster than for-loops. This link might be useful in understanding vectorization:
http://www.mathworks.com/help/matlab/matlab_prog/vectorization.html
For example, the second for-loop can be replaced by the following vectorized form, as suggested in the comments
tempS = double(S);
meanS = mean(S,1);
stdS = std(S,0,1);
S = (tempS - meanS) ./ stdS;
Use MATLAB's timer functions tic and toc for finding how long the first for-loop alone is taking to execute. Add tic before the for loop and toc after it. If the time taken for 50 images is about 104 seconds, then it would be significantly more for 1200 images.
I am on a project thumb recognition system on matlab. I implemented Kmean Algorithm and I got results as well. Actually now I want to plot the results like here they done. I am trying but couldn't be able to do so. I am using the following code.
load training.mat; % loaded just to get trainingData variable
labelData = zeros(200,1);
labelData(1:100,:) = 0;
labelData(101:200,:) = 1;
k=2;
[trainCtr, traina] = kmeans(trainingData,k);
trainingResult1=[];
for i=1:k
trainingResult1 = [trainingResult1 sum(trainCtr(1:100)==i)];
end
trainingResult2=[];
for i=1:k
trainingResult2 = [trainingResult2 sum(trainCtr(101:200)==i)];
end
load testing.mat; % loaded just to get testingData variable
c1 = zeros(k,1054);
c1 = traina;
cluster = zeros(200,1);
for j=1:200
testTemp = repmat(testingData(j,1:1054),k,1);
difference = sum((c1 - testTemp).^2, 2);
[value index] = min(difference);
cluster(j,1) = index;
end
testingResult1 = [];
for i=1:k
testingResult1 = [testingResult1 sum(cluster(1:100)==i)];
end
testingResult2 = [];
for i=1:k
testingResult2 = [testingResult2 sum(cluster(101:200)==i)];
end
in above code trainingData is matrix of 200 X 1054 in which 200 are images of thumbs and 1054 are columns. actually each image is of 25 X 42. I reshaped each image in to row matrix (1 X 1050) and 4 other (some features) columns so total of 1054 columns are in each image. Similarly testingData I made it in the similar manner as I made testingData It is also the order of 200 X 1054. Now my Problem is just to plot the results as they did in here.
After selecting 2 features, you can just follow the example. Start a figure, use hold on, and use plot or scatter to plot the centroids and the data points. E.g.
selectedFeatures = [42,43];
plot(trainingData(trainCtr==1,selectedFeatures(1)),
trainingData(trainCtr==1,selectedFeatures(2)),
'r.','MarkerSize',12)
Would plot the selected feature values of the data points in cluster 1.