(Unknown queue MSG=requested queue not found) - torque

I am trying to run wien2k jobs with torque job scheduler (maui scheduler) in ubuntu 14.04 . the app is installed correctly without any error messages but when add the bash script , I encounter with this error "qsub: submit error (Unknown queue MSG=requested queue not found)". I read about this error in this website.
can any one help me please?
it's my PBS Queue Manager after using qmgr -c "p s" command:
Create queues and set their attributes.
Create and define queue batch
create queue batch
set queue batch queue_type = Execution
set queue batch max_running = 20
set queue batch resources_max.ncpus = 20
set queue batch resources_max.nodes = 20
set queue batch resources_default.ncpus = 1
set queue batch resources_default.nodect = 1
set queue batch resources_default.nodes = 1
set queue batch resources_default.walltime = 76790:53:51
set queue batch enabled = True
set queue batch started = True
set server attributes.
set server scheduling = True
set server acl_hosts = seconduser
set server acl_hosts += firstuser
set server managers = root#localhost
set server managers += secfir#localhost
set server operators = root#localhost
set server operators += secfir#localhost
set server default_queue = batch
set server log_events = 511
set server mail_from = adm
set server scheduler_iteration = 600
set server node_check_rate = 150
set server tcp_timeout = 300
set server job_stat_rate = 45
set server poll_jobs = True
set server mom_job_sync = True
set server keep_completed = 0
set server next_job_number = 47
set server moab_array_compatible = True
set server nppcu = 1

Try running:
qmgr -c "p s"
Look through the config for queue names. If there is a routing queue try submitting your job with qsub -q queuename jobfile . If a routing queue doesn't exist you can try execution queues. Otherwise, it may be best to ask the cluster admin since they have the power to kill your jobs if you don't do it properly.

Just had the same problem and fixed it. The fullest way to do a qsub is (described here)
qsub -q queuename scriptname
Your queuename can be find using the command described in the previous answer, as you did
qmgr -c "p s"
The result for yours (and mine as well) is that the queue name is "batch." Multiple lines determine this, such as "Create and define queue batch," and "create queue batch," but most assuredly:
set server default_queue = batch
So, submit your job script with
qsub -q batch scriptname

Related

Is there a function in celery for finding waiting messages in a queue? [duplicate]

How can I retrieve a list of tasks in a queue that are yet to be processed?
EDIT: See other answers for getting a list of tasks in the queue.
You should look here:
Celery Guide - Inspecting Workers
Basically this:
my_app = Celery(...)
# Inspect all nodes.
i = my_app.control.inspect()
# Show the items that have an ETA or are scheduled for later processing
i.scheduled()
# Show tasks that are currently active.
i.active()
# Show tasks that have been claimed by workers
i.reserved()
Depending on what you want
If you are using Celery+Django simplest way to inspect tasks using commands directly from your terminal in your virtual environment or using a full path to celery:
Doc: http://docs.celeryproject.org/en/latest/userguide/workers.html?highlight=revoke#inspecting-workers
$ celery inspect reserved
$ celery inspect active
$ celery inspect registered
$ celery inspect scheduled
Also if you are using Celery+RabbitMQ you can inspect the list of queues using the following command:
More info: https://linux.die.net/man/1/rabbitmqctl
$ sudo rabbitmqctl list_queues
if you are using rabbitMQ, use this in terminal:
sudo rabbitmqctl list_queues
it will print list of queues with number of pending tasks. for example:
Listing queues ...
0b27d8c59fba4974893ec22d478a7093 0
0e0a2da9828a48bc86fe993b210d984f 0
10#torob2.celery.pidbox 0
11926b79e30a4f0a9d95df61b6f402f7 0
15c036ad25884b82839495fb29bd6395 1
celerey_mail_worker#torob2.celery.pidbox 0
celery 166
celeryev.795ec5bb-a919-46a8-80c6-5d91d2fcf2aa 0
celeryev.faa4da32-a225-4f6c-be3b-d8814856d1b6 0
the number in right column is number of tasks in the queue. in above, celery queue has 166 pending task.
If you don't use prioritized tasks, this is actually pretty simple if you're using Redis. To get the task counts:
redis-cli -h HOST -p PORT -n DATABASE_NUMBER llen QUEUE_NAME
But, prioritized tasks use a different key in redis, so the full picture is slightly more complicated. The full picture is that you need to query redis for every priority of task. In python (and from the Flower project), this looks like:
PRIORITY_SEP = '\x06\x16'
DEFAULT_PRIORITY_STEPS = [0, 3, 6, 9]
def make_queue_name_for_pri(queue, pri):
"""Make a queue name for redis
Celery uses PRIORITY_SEP to separate different priorities of tasks into
different queues in Redis. Each queue-priority combination becomes a key in
redis with names like:
- batch1\x06\x163 <-- P3 queue named batch1
There's more information about this in Github, but it doesn't look like it
will change any time soon:
- https://github.com/celery/kombu/issues/422
In that ticket the code below, from the Flower project, is referenced:
- https://github.com/mher/flower/blob/master/flower/utils/broker.py#L135
:param queue: The name of the queue to make a name for.
:param pri: The priority to make a name with.
:return: A name for the queue-priority pair.
"""
if pri not in DEFAULT_PRIORITY_STEPS:
raise ValueError('Priority not in priority steps')
return '{0}{1}{2}'.format(*((queue, PRIORITY_SEP, pri) if pri else
(queue, '', '')))
def get_queue_length(queue_name='celery'):
"""Get the number of tasks in a celery queue.
:param queue_name: The name of the queue you want to inspect.
:return: the number of items in the queue.
"""
priority_names = [make_queue_name_for_pri(queue_name, pri) for pri in
DEFAULT_PRIORITY_STEPS]
r = redis.StrictRedis(
host=settings.REDIS_HOST,
port=settings.REDIS_PORT,
db=settings.REDIS_DATABASES['CELERY'],
)
return sum([r.llen(x) for x in priority_names])
If you want to get an actual task, you can use something like:
redis-cli -h HOST -p PORT -n DATABASE_NUMBER lrange QUEUE_NAME 0 -1
From there you'll have to deserialize the returned list. In my case I was able to accomplish this with something like:
r = redis.StrictRedis(
host=settings.REDIS_HOST,
port=settings.REDIS_PORT,
db=settings.REDIS_DATABASES['CELERY'],
)
l = r.lrange('celery', 0, -1)
pickle.loads(base64.decodestring(json.loads(l[0])['body']))
Just be warned that deserialization can take a moment, and you'll need to adjust the commands above to work with various priorities.
To retrieve tasks from backend, use this
from amqplib import client_0_8 as amqp
conn = amqp.Connection(host="localhost:5672 ", userid="guest",
password="guest", virtual_host="/", insist=False)
chan = conn.channel()
name, jobs, consumers = chan.queue_declare(queue="queue_name", passive=True)
A copy-paste solution for Redis with json serialization:
def get_celery_queue_items(queue_name):
import base64
import json
# Get a configured instance of a celery app:
from yourproject.celery import app as celery_app
with celery_app.pool.acquire(block=True) as conn:
tasks = conn.default_channel.client.lrange(queue_name, 0, -1)
decoded_tasks = []
for task in tasks:
j = json.loads(task)
body = json.loads(base64.b64decode(j['body']))
decoded_tasks.append(body)
return decoded_tasks
It works with Django. Just don't forget to change yourproject.celery.
This worked for me in my application:
def get_celery_queue_active_jobs(queue_name):
connection = <CELERY_APP_INSTANCE>.connection()
try:
channel = connection.channel()
name, jobs, consumers = channel.queue_declare(queue=queue_name, passive=True)
active_jobs = []
def dump_message(message):
active_jobs.append(message.properties['application_headers']['task'])
channel.basic_consume(queue=queue_name, callback=dump_message)
for job in range(jobs):
connection.drain_events()
return active_jobs
finally:
connection.close()
active_jobs will be a list of strings that correspond to tasks in the queue.
Don't forget to swap out CELERY_APP_INSTANCE with your own.
Thanks to #ashish for pointing me in the right direction with his answer here: https://stackoverflow.com/a/19465670/9843399
The celery inspect module appears to only be aware of the tasks from the workers perspective. If you want to view the messages that are in the queue (yet to be pulled by the workers) I suggest to use pyrabbit, which can interface with the rabbitmq http api to retrieve all kinds of information from the queue.
An example can be found here:
Retrieve queue length with Celery (RabbitMQ, Django)
I think the only way to get the tasks that are waiting is to keep a list of tasks you started and let the task remove itself from the list when it's started.
With rabbitmqctl and list_queues you can get an overview of how many tasks are waiting, but not the tasks itself: http://www.rabbitmq.com/man/rabbitmqctl.1.man.html
If what you want includes the task being processed, but are not finished yet, you can keep a list of you tasks and check their states:
from tasks import add
result = add.delay(4, 4)
result.ready() # True if finished
Or you let Celery store the results with CELERY_RESULT_BACKEND and check which of your tasks are not in there.
As far as I know Celery does not give API for examining tasks that are waiting in the queue. This is broker-specific. If you use Redis as a broker for an example, then examining tasks that are waiting in the celery (default) queue is as simple as:
connect to the broker
list items in the celery list (LRANGE command for an example)
Keep in mind that these are tasks WAITING to be picked by available workers. Your cluster may have some tasks running - those will not be in this list as they have already been picked.
The process of retrieving tasks in particular queue is broker-specific.
I've come to the conclusion the best way to get the number of jobs on a queue is to use rabbitmqctl as has been suggested several times here. To allow any chosen user to run the command with sudo I followed the instructions here (I did skip editing the profile part as I don't mind typing in sudo before the command.)
I also grabbed jamesc's grep and cut snippet and wrapped it up in subprocess calls.
from subprocess import Popen, PIPE
p1 = Popen(["sudo", "rabbitmqctl", "list_queues", "-p", "[name of your virtula host"], stdout=PIPE)
p2 = Popen(["grep", "-e", "^celery\s"], stdin=p1.stdout, stdout=PIPE)
p3 = Popen(["cut", "-f2"], stdin=p2.stdout, stdout=PIPE)
p1.stdout.close()
p2.stdout.close()
print("number of jobs on queue: %i" % int(p3.communicate()[0]))
If you control the code of the tasks then you can work around the problem by letting a task trigger a trivial retry the first time it executes, then checking inspect().reserved(). The retry registers the task with the result backend, and celery can see that. The task must accept self or context as first parameter so we can access the retry count.
#task(bind=True)
def mytask(self):
if self.request.retries == 0:
raise self.retry(exc=MyTrivialError(), countdown=1)
...
This solution is broker agnostic, ie. you don't have to worry about whether you are using RabbitMQ or Redis to store the tasks.
EDIT: after testing I've found this to be only a partial solution. The size of reserved is limited to the prefetch setting for the worker.
from celery.task.control import inspect
def key_in_list(k, l):
return bool([True for i in l if k in i.values()])
def check_task(task_id):
task_value_dict = inspect().active().values()
for task_list in task_value_dict:
if self.key_in_list(task_id, task_list):
return True
return False
With subprocess.run:
import subprocess
import re
active_process_txt = subprocess.run(['celery', '-A', 'my_proj', 'inspect', 'active'],
stdout=subprocess.PIPE).stdout.decode('utf-8')
return len(re.findall(r'worker_pid', active_process_txt))
Be careful to change my_proj with your_proj
To get the number of tasks on a queue you can use the flower library, here is a simplified example:
from flower.utils.broker import Broker
from django.conf import settings
def get_queue_length(queue):
broker = Broker(settings.CELERY_BROKER_URL)
queues_result = broker.queues([queue])
return queues_result.result()[0]['messages']

what is the correct configuration of mod_ping on ejabberd-18.12.1?

I am using ejabberd server version 18.12.1 with stream management enabled. When the user disconnects from the internet, its presence remains online so I decided to use mod_ping to kill the connection after a timeout using mod ping
I used the following config in ejabberd.yml file :
mod_ping:
send_pings: true
ping_ack_timeout: 32
timeout_action: kill
considering the default value of ping_interval : 60.
Ping does not seem to be working with this configuration. Am I missing any other configuration ? should the client enable something to make this working ? is there any ping log that I can check?
Note: using the modules page of the web admin of ejabberd server, the config value of the ping_ack_timeout of mod_ping seems to be different from the one in the ejabberd.yml file, why is that?
[{ping_interval,60},
{ping_ack_timeout,32000},
{send_pings,true},
{timeout_action,kill}]
Note: using the modules page of the web admin of ejabberd server, the config value of the ping_ack_timeout of mod_ping seems to be different from the one in the ejabberd.yml file, why is that?
That is expected: you set the human-configurable option in seconds, and later the internal time value is expressed in milliseconds (the time unit used by erlang).
Am I missing any other configuration ? should the client enable something to make this working ? is there any ping log that I can check?
That should be enough. Try with other clients, just to check if that affects in any way. I've installed ejabberd 18.12, configured like this:
loglevel: 5
...
mod_ping:
send_pings: true
ping_interval: 10
ping_ack_timeout: 15
timeout_action: kill
Then I start ejabberd and login with Tkaber client (but I think any client is good for testing ping). Every ten seconds, the client receives this query:
<iq to='user1#localhost/tka1'
from='user1#localhost'
type='get'
id='rr-1552642185584-13814872912241253802-5xOvCCobbU2TCC/RT4GaqD6M8bo=-55238004'>
<ping xmlns='urn:xmpp:ping'/>
</iq>
And at the same time, the ejabberd log file shows several messages, starting with this one:
10:29:30.585 [debug] route:
#iq{id = <<"rr-1552642185584-13814872912241253802-5xOvCCobbU2TCC/RT4GaqD6M8bo=-55238004">>,
type = get,lang = <<>>,
from = #jid{user = <<"user1">>,server = <<"localhost">>,resource = <<>>,
luser = <<"user1">>,lserver = <<"localhost">>,
lresource = <<>>},
to = #jid{user = <<"user1">>,server = <<"localhost">>,
resource = <<"tka1">>,luser = <<"user1">>,
lserver = <<"localhost">>,lresource = <<"tka1">>},
sub_els = [#ping{}],
meta = #{}}

Airflow CeleryExecutor With AWS SQS

I'm trying to cluster my Airflow setup and I'm using this article to do so. I just configured my airflow.cfg file to use the CeleryExecutor, I pointed my sql_alchemy_conn to my postgresql database that's running on the same master node, I've set the broker_url to use SQS (I didn't set the access_key_id or secret_key since it's running on an EC2-Instance it doesn't need those), and I've set the celery_result_backend to my postgresql server too. I saved my new airflow.cfg changes, I ran airflow initdb, and then I ran airflow scheduler and I'm getting this error from the scheduler,
[2018-06-07 21:07:33,420] {celery_executor.py:101} ERROR - Error syncing the celery executor, ignoring it:
[2018-06-07 21:07:33,421] {celery_executor.py:102} ERROR - Can't load plugin: sqlalchemy.dialects:psycopg2
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/airflow/executors/celery_executor.py", line 83, in sync
state = async.state
File "/usr/local/lib/python3.6/site-packages/celery/result.py", line 433, in state
return self._get_task_meta()['status']
File "/usr/local/lib/python3.6/site-packages/celery/result.py", line 372, in _get_task_meta
return self._maybe_set_cache(self.backend.get_task_meta(self.id))
File "/usr/local/lib/python3.6/site-packages/celery/backends/base.py", line 344, in get_task_meta
meta = self._get_task_meta_for(task_id)
File "/usr/local/lib/python3.6/site-packages/celery/backends/database/__init__.py", line 53, in _inner
return fun(*args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/celery/backends/database/__init__.py", line 122, in _get_task_meta_for
session = self.ResultSession()
File "/usr/local/lib/python3.6/site-packages/celery/backends/database/__init__.py", line 99, in ResultSession
**self.engine_options)
File "/usr/local/lib/python3.6/site-packages/celery/backends/database/session.py", line 59, in session_factory
engine, session = self.create_session(dburi, **kwargs)
File "/usr/local/lib/python3.6/site-packages/celery/backends/database/session.py", line 45, in create_session
engine = self.get_engine(dburi, **kwargs)
File "/usr/local/lib/python3.6/site-packages/celery/backends/database/session.py", line 42, in get_engine
return create_engine(dburi, poolclass=NullPool)
File "/usr/local/lib/python3.6/site-packages/sqlalchemy/engine/__init__.py", line 424, in create_engine
return strategy.create(*args, **kwargs)
File "/usr/local/lib/python3.6/site-packages/sqlalchemy/engine/strategies.py", line 57, in create
entrypoint = u._get_entrypoint()
File "/usr/local/lib/python3.6/site-packages/sqlalchemy/engine/url.py", line 156, in _get_entrypoint
cls = registry.load(name)
File "/usr/local/lib/python3.6/site-packages/sqlalchemy/util/langhelpers.py", line 221, in load
(self.group, name))
sqlalchemy.exc.NoSuchModuleError: Can't load plugin: sqlalchemy.dialects:psycopg2
Here is my airflow.cfg file,
[core]
# The home folder for airflow, default is ~/airflow
airflow_home = /home/ec2-user/airflow
# The folder where your airflow pipelines live, most likely a
# subfolder in a code repository
# This path must be absolute
dags_folder = /home/ec2-user/airflow/dags
# The folder where airflow should store its log files
# This path must be absolute
base_log_folder = /home/ec2-user/airflow/logs
# Airflow can store logs remotely in AWS S3 or Google Cloud Storage. Users
# must supply an Airflow connection id that provides access to the storage
# location.
remote_log_conn_id =
encrypt_s3_logs = False
# Logging level
logging_level = INFO
# Logging class
# Specify the class that will specify the logging configuration
# This class has to be on the python classpath
# logging_config_class = my.path.default_local_settings.LOGGING_CONFIG
logging_config_class =
# Log format
log_format = [%%(asctime)s] {%%(filename)s:%%(lineno)d} %%(levelname)s - %%(message)s
simple_log_format = %%(asctime)s %%(levelname)s - %%(message)s
# The executor class that airflow should use. Choices include
# SequentialExecutor, LocalExecutor, CeleryExecutor, DaskExecutor
#executor = SequentialExecutor
executor = CeleryExecutor
# The SqlAlchemy connection string to the metadata database.
# SqlAlchemy supports many different database engine, more information
# their website
#sql_alchemy_conn = sqlite:////home/ec2-user/airflow/airflow.db
sql_alchemy_conn = postgresql+psycopg2://postgres:$password#localhost/datalake_airflow_cluster_v1_master1_database_1
# The SqlAlchemy pool size is the maximum number of database connections
# in the pool.
sql_alchemy_pool_size = 5
# The SqlAlchemy pool recycle is the number of seconds a connection
# can be idle in the pool before it is invalidated. This config does
# not apply to sqlite.
sql_alchemy_pool_recycle = 3600
# The amount of parallelism as a setting to the executor. This defines
# the max number of task instances that should run simultaneously
# on this airflow installation
parallelism = 32
# The number of task instances allowed to run concurrently by the scheduler
dag_concurrency = 16
# Are DAGs paused by default at creation
dags_are_paused_at_creation = True
# When not using pools, tasks are run in the "default pool",
# whose size is guided by this config element
non_pooled_task_slot_count = 128
# The maximum number of active DAG runs per DAG
max_active_runs_per_dag = 16
# Whether to load the examples that ship with Airflow. It's good to
# get started, but you probably want to set this to False in a production
# environment
load_examples = True
# Where your Airflow plugins are stored
plugins_folder = /home/ec2-user/airflow/plugins
# Secret key to save connection passwords in the db
fernet_key = ibwZ5uSASmZGphBmwdJ4BIhd1-5WZXMTTgMF9u1_dGM=
# Whether to disable pickling dags
donot_pickle = False
# How long before timing out a python file import while filling the DagBag
dagbag_import_timeout = 30
# The class to use for running task instances in a subprocess
task_runner = BashTaskRunner
# If set, tasks without a `run_as_user` argument will be run with this user
# Can be used to de-elevate a sudo user running Airflow when executing tasks
default_impersonation =
# What security module to use (for example kerberos):
security =
# Turn unit test mode on (overwrites many configuration options with test
# values at runtime)
unit_test_mode = False
# Name of handler to read task instance logs.
# Default to use file task handler.
task_log_reader = file.task
# Whether to enable pickling for xcom (note that this is insecure and allows for
# RCE exploits). This will be deprecated in Airflow 2.0 (be forced to False).
enable_xcom_pickling = True
# When a task is killed forcefully, this is the amount of time in seconds that
# it has to cleanup after it is sent a SIGTERM, before it is SIGKILLED
killed_task_cleanup_time = 60
[cli]
# In what way should the cli access the API. The LocalClient will use the
# database directly, while the json_client will use the api running on the
# webserver
api_client = airflow.api.client.local_client
endpoint_url = http://localhost:8080
[api]
# How to authenticate users of the API
auth_backend = airflow.api.auth.backend.default
[operators]
# The default owner assigned to each new operator, unless
# provided explicitly or passed via `default_args`
default_owner = Airflow
default_cpus = 1
default_ram = 512
default_disk = 512
default_gpus = 0
[webserver]
# The base url of your website as airflow cannot guess what domain or
# cname you are using. This is used in automated emails that
# airflow sends to point links to the right web server
base_url = http://localhost:8080
# The ip specified when starting the web server
web_server_host = 0.0.0.0
# The port on which to run the web server
web_server_port = 8080
# Paths to the SSL certificate and key for the web server. When both are
# provided SSL will be enabled. This does not change the web server port.
web_server_ssl_cert =
web_server_ssl_key =
# Number of seconds the gunicorn webserver waits before timing out on a worker
web_server_worker_timeout = 120
# Number of workers to refresh at a time. When set to 0, worker refresh is
# disabled. When nonzero, airflow periodically refreshes webserver workers by
# bringing up new ones and killing old ones.
worker_refresh_batch_size = 1
# Number of seconds to wait before refreshing a batch of workers.
worker_refresh_interval = 30
# Secret key used to run your flask app
secret_key = temporary_key
# Number of workers to run the Gunicorn web server
workers = 4
# The worker class gunicorn should use. Choices include
# sync (default), eventlet, gevent
worker_class = sync
# Log files for the gunicorn webserver. '-' means log to stderr.
access_logfile = -
error_logfile = -
# Expose the configuration file in the web server
expose_config = False
# Set to true to turn on authentication:
# http://pythonhosted.org/airflow/security.html#web-authentication
authenticate = False
# Filter the list of dags by owner name (requires authentication to be enabled)
filter_by_owner = False
# Filtering mode. Choices include user (default) and ldapgroup.
# Ldap group filtering requires using the ldap backend
#
# Note that the ldap server needs the "memberOf" overlay to be set up
# in order to user the ldapgroup mode.
owner_mode = user
# Default DAG view. Valid values are:
# tree, graph, duration, gantt, landing_times
dag_default_view = tree
# Default DAG orientation. Valid values are:
# LR (Left->Right), TB (Top->Bottom), RL (Right->Left), BT (Bottom->Top)
dag_orientation = LR
# Puts the webserver in demonstration mode; blurs the names of Operators for
# privacy.
demo_mode = False
# The amount of time (in secs) webserver will wait for initial handshake
# while fetching logs from other worker machine
log_fetch_timeout_sec = 5
# By default, the webserver shows paused DAGs. Flip this to hide paused
# DAGs by default
hide_paused_dags_by_default = False
# Consistent page size across all listing views in the UI
page_size = 100
[email]
email_backend = airflow.utils.email.send_email_smtp
[smtp]
# If you want airflow to send emails on retries, failure, and you want to use
# the airflow.utils.email.send_email_smtp function, you have to configure an
# smtp server here
smtp_host = localhost
smtp_starttls = True
smtp_ssl = False
# Uncomment and set the user/pass settings if you want to use SMTP AUTH
# smtp_user = airflow
# smtp_password = airflow
smtp_port = 25
smtp_mail_from = airflow#example.com
[celery]
# This section only applies if you are using the CeleryExecutor in
# [core] section above
# The app name that will be used by celery
celery_app_name = airflow.executors.celery_executor
# The concurrency that will be used when starting workers with the
# "airflow worker" command. This defines the number of task instances that
# a worker will take, so size up your workers based on the resources on
# your worker box and the nature of your tasks
celeryd_concurrency = 16
# When you start an airflow worker, airflow starts a tiny web server
# subprocess to serve the workers local log files to the airflow main
# web server, who then builds pages and sends them to users. This defines
# the port on which the logs are served. It needs to be unused, and open
# visible from the main web server to connect into the workers.
worker_log_server_port = 8793
# The Celery broker URL. Celery supports RabbitMQ, Redis and experimentally
# a sqlalchemy database. Refer to the Celery documentation for more
# information.
#broker_url = sqla+mysql://airflow:airflow#localhost:3306/airflow
broker_url = sqs://
# Another key Celery setting
#celery_result_backend = db+mysql://airflow:airflow#localhost:3306/airflow
celery_result_backend = db+psycopg2://postgres:$password#localhost/datalake_airflow_cluster_v1_master1_database_1
# Celery Flower is a sweet UI for Celery. Airflow has a shortcut to start
# it `airflow flower`. This defines the IP that Celery Flower runs on
flower_host = 0.0.0.0
# This defines the port that Celery Flower runs on
flower_port = 5555
# Default queue that tasks get assigned to and that worker listen on.
default_queue = default
# Import path for celery configuration options
celery_config_options = airflow.config_templates.default_celery.DEFAULT_CELERY_CONFIG
[dask]
# This section only applies if you are using the DaskExecutor in
# [core] section above
# The IP address and port of the Dask cluster's scheduler.
cluster_address = 127.0.0.1:8786
[scheduler]
# Task instances listen for external kill signal (when you clear tasks
# from the CLI or the UI), this defines the frequency at which they should
# listen (in seconds).
job_heartbeat_sec = 5
# The scheduler constantly tries to trigger new tasks (look at the
# scheduler section in the docs for more information). This defines
# how often the scheduler should run (in seconds).
scheduler_heartbeat_sec = 5
# after how much time should the scheduler terminate in seconds
# -1 indicates to run continuously (see also num_runs)
run_duration = -1
# after how much time a new DAGs should be picked up from the filesystem
min_file_process_interval = 0
dag_dir_list_interval = 300
# How often should stats be printed to the logs
print_stats_interval = 30
child_process_log_directory = /home/ec2-user/airflow/logs/scheduler
# Local task jobs periodically heartbeat to the DB. If the job has
# not heartbeat in this many seconds, the scheduler will mark the
# associated task instance as failed and will re-schedule the task.
scheduler_zombie_task_threshold = 300
# Turn off scheduler catchup by setting this to False.
# Default behavior is unchanged and
# Command Line Backfills still work, but the scheduler
# will not do scheduler catchup if this is False,
# however it can be set on a per DAG basis in the
# DAG definition (catchup)
catchup_by_default = True
# This changes the batch size of queries in the scheduling main loop.
# This depends on query length limits and how long you are willing to hold locks.
# 0 for no limit
max_tis_per_query = 0
# Statsd (https://github.com/etsy/statsd) integration settings
statsd_on = False
statsd_host = localhost
statsd_port = 8125
statsd_prefix = airflow
# The scheduler can run multiple threads in parallel to schedule dags.
# This defines how many threads will run.
max_threads = 2
authenticate = False
[ldap]
# set this to ldaps://<your.ldap.server>:<port>
uri =
user_filter = objectClass=*
user_name_attr = uid
group_member_attr = memberOf
superuser_filter =
data_profiler_filter =
bind_user = cn=Manager,dc=example,dc=com
bind_password = insecure
basedn = dc=example,dc=com
cacert = /etc/ca/ldap_ca.crt
search_scope = LEVEL
[mesos]
# Mesos master address which MesosExecutor will connect to.
master = localhost:5050
# The framework name which Airflow scheduler will register itself as on mesos
framework_name = Airflow
# Number of cpu cores required for running one task instance using
# 'airflow run <dag_id> <task_id> <execution_date> --local -p <pickle_id>'
# command on a mesos slave
task_cpu = 1
# Memory in MB required for running one task instance using
# 'airflow run <dag_id> <task_id> <execution_date> --local -p <pickle_id>'
# command on a mesos slave
task_memory = 256
# Enable framework checkpointing for mesos
# See http://mesos.apache.org/documentation/latest/slave-recovery/
checkpoint = False
# Failover timeout in milliseconds.
# When checkpointing is enabled and this option is set, Mesos waits
# until the configured timeout for
# the MesosExecutor framework to re-register after a failover. Mesos
# shuts down running tasks if the
# MesosExecutor framework fails to re-register within this timeframe.
# failover_timeout = 604800
# Enable framework authentication for mesos
# See http://mesos.apache.org/documentation/latest/configuration/
authenticate = False
# Mesos credentials, if authentication is enabled
# default_principal = admin
# default_secret = admin
[kerberos]
ccache = /tmp/airflow_krb5_ccache
# gets augmented with fqdn
principal = airflow
reinit_frequency = 3600
kinit_path = kinit
keytab = airflow.keytab
[github_enterprise]
api_rev = v3
[admin]
# UI to hide sensitive variable fields when set to True
hide_sensitive_variable_fields = True
I'm not too sure what's going on here. Is there additional setup I need to do on Celery or anything else? I'm also confused as to how it knows which SQS queue to use on AWS? Does it create a new queue itself or do I need to create the queue on AWS and put that url somewhere?
See this question here: https://stackoverflow.com/a/39967889/5191221
Taken from there:
So replace:
celery_result_backend = postgresql+psycopg2://username:password#192.168.1.2:5432/airflow
with something like:
celery_result_backend = db+postgresql://username:password#192.168.1.2:5432/airflow

Can't obtain database connection within 5 seconds - Sidekiq workers, Unicorn, Redis ToGo on Heroku

I've a bunch background tasks (Sidekiq workers) that update database, and I keep getting this failing thread exception.
Heroku Log: WARN: could not obtain a database connection within 5.000 seconds (waited 5.001 seconds)
Heroku
Heroku Postgres :: Olive - 20 connections limit.
Redis ToGo - 10 connections limit.
Sidekiq - 2 connections.
Each client request create ~50 threads - finally ~20 threads trying to update db.
Now I know this is too much threads trying to make connection (updating Active:Record..).
I don't mind them to wait in try again until success.
-config/unicorn.rb
worker_processes Integer(ENV["WEB_CONCURRENCY"] || 3)
timeout 30
preload_app true
before_fork do |server, worker|
Signal.trap 'TERM' do
puts 'Unicorn master intercepting TERM and sending myself QUIT instead'
Process.kill 'QUIT', Process.pid
end
if defined?(ActiveRecord::Base)
ActiveRecord::Base.connection.disconnect!
end
end
after_fork do |server, worker|
Signal.trap 'TERM' do
puts 'Unicorn worker intercepting TERM and doing nothing. Wait for master to send QUIT'
end
if defined?(ActiveRecord::Base)
config = ActiveRecord::Base.configurations[Rails.env] ||
Rails.application.config.database_configuration[Rails.env]
config['pool'] = ENV['DB_POOL'] || 2
config['reaping_frequency'] = ENV['DB_REAP_FREQ'] || 10 # seconds
ActiveRecord::Base.establish_connection(config)
end
end
-config/initializers/sidekiq.rb
require 'sidekiq'
Sidekiq.configure_server do |config|
if(database_url = ENV['DATABASE_URL'])
p pool_size = Sidekiq.options[:concurrency] + 2
p ENV['DATABASE_URL'] = "#{database_url}?pool=#{pool_size}"
ActiveRecord::Base.establish_connection
end
end
--condig/sidekiq.yml
:concurrency: 2
Thanks a lot for all the help,
Eldar

uWSGI, Flask, sqlalchemy, and postgres: SSL error: decryption failed or bad record mac

I'm trying to setup an application webserver using uWSGI + Nginx, which runs a Flask application using SQLAlchemy to communicate to a Postgres database.
When I make requests to the webserver, every other response will be a 500 error.
The error is:
Traceback (most recent call last):
File "/var/env/argos/lib/python3.3/site-packages/sqlalchemy/engine/base.py", line 867, in _execute_context
context)
File "/var/env/argos/lib/python3.3/site-packages/sqlalchemy/engine/default.py", line 388, in do_execute
cursor.execute(statement, parameters)
psycopg2.OperationalError: SSL error: decryption failed or bad record mac
The above exception was the direct cause of the following exception:
sqlalchemy.exc.OperationalError: (OperationalError) SSL error: decryption failed or bad record mac
The error is triggered by a simple Flask-SQLAlchemy method:
result = models.Event.query.get(id)
uwsgi is being managed by supervisor, which has a config:
[program:my_app]
command=/usr/bin/uwsgi --ini /etc/uwsgi/apps-enabled/myapp.ini --catch-exceptions
directory=/path/to/my/app
stopsignal=QUIT
autostart=true
autorestart=true
and uwsgi's config looks like:
[uwsgi]
socket = /tmp/my_app.sock
logto = /var/log/my_app.log
plugins = python3
virtualenv = /path/to/my/venv
pythonpath = /path/to/my/app
wsgi-file = /path/to/my/app/application.py
callable = app
max-requests = 1000
chmod-socket = 666
chown-socket = www-data:www-data
master = true
processes = 2
no-orphans = true
log-date = true
uid = www-data
gid = www-data
The furthest that I can get is that it has something to do with uwsgi's forking. But beyond that I'm not clear on what needs to be done.
The issue ended up being uwsgi's forking.
When working with multiple processes with a master process, uwsgi initializes the application in the master process and then copies the application over to each worker process. The problem is if you open a database connection when initializing your application, you then have multiple processes sharing the same connection, which causes the error above.
The solution is to set the lazy configuration option for uwsgi, which forces a complete loading of the application in each process:
lazy
Set lazy mode (load apps in workers instead of master).
This option may have memory usage implications as Copy-on-Write semantics can not be used. When lazy is enabled, only workers will be reloaded by uWSGI’s reload signals; the master will remain alive. As such, uWSGI configuration changes are not picked up on reload by the master.
There's also a lazy-apps option:
lazy-apps
Load apps in each worker instead of the master.
This option may have memory usage implications as Copy-on-Write semantics can not be used. Unlike lazy, this only affects the way applications are loaded, not master’s behavior on reload.
This uwsgi configuration ended up working for me:
[uwsgi]
socket = /tmp/my_app.sock
logto = /var/log/my_app.log
plugins = python3
virtualenv = /path/to/my/venv
pythonpath = /path/to/my/app
wsgi-file = /path/to/my/app/application.py
callable = app
max-requests = 1000
chmod-socket = 666
chown-socket = www-data:www-data
master = true
processes = 2
no-orphans = true
log-date = true
uid = www-data
gid = www-data
# the fix
lazy = true
lazy-apps = true
As an alternative you might dispose the engine. This is how I solved the problem.
Such issues may happen if there is a query during the creation of the app, that is, in the module that creates the app itself. If that states, the engine allocates a pool of connections and then uwsgi forks.
By invoking 'engine.dispose()', the connection pool itself is closed and new connections will come up as soon as someone starts making queries again. So if you do that at the end of the module where you create your app, new connections will be created after the UWSGI fork.
I am running a flask app using gunicorn on Heroku. My application started exhibiting this problem when I added the --preload option to my Procfile. When I removed that option, my application resumed functioning as normal.
Not sure whether to add this as an answer to this question or ask a separate question and put this as an answer there. I was getting this exact same error for reasons that are slightly different from the people who have posted and answered. In my setup, I using gunicorn as a wsgi for a Flask application. In this application, I was offloading some intense database operations off to a celery worker. The error would come from the celery worker.
From reading a lot of the answers here and looking at the psycopg2 as well as sqlalchemy session documentation, it became apparent to me that it is a bad idea to share an SQLAlchemy session between separate processes (the gunicorn worker and the sqlalchemy worker in my case).
What ended up solving this for me was creating a new session in the celery worker function so it used a new session each time it was called and also destroying the session after every web request so flask used a session per request. The overall solution looked like this:
Flask_app.py
#app.teardown_appcontext
def shutdown_session(exception=None):
session.close()
celery_func.py
#celery_app.task(bind=True, throws=(IntegrityError))
def access_db(self,entity_dict, tablename):
with Session() as session:
try:
session.add(ORM_obj)
session.commit()
except IntegrityError as e:
session.rollback()
print('primary key violated')
raise e