I can not handle the situation to install capybara-webkit on yosemity
Any idea is welcome.
Installing capybara-webkit (1.3.1)
Gem::Installer::ExtensionBuildError: ERROR: Failed to build gem native extension.
/Users/boti/.rvm/rubies/ruby-2.0.0-p353/bin/ruby extconf.rb
cd src/ && /usr/local/bin/qmake /Users/boti/.rvm/gems/ruby-2.0.0-p353#myaidin/gems/capybara-webkit-1.3.1/src/webkit_server.pro -spec /usr/local/Cellar/qt/4.8.7/mkspecs/macx-g++ -o Makefile.webkit_server
cd src/ && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Makefile.webkit_server
g++ -pipe -O2 -arch x86_64 -Xarch_x86_64 -mmacosx-version-min=10.5 -Wall -W -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/Cellar/qt/4.8.7/mkspecs/macx-g++ -I. -I/usr/local/Cellar/qt/4.8.7/lib/QtCore.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtCore.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtNetwork.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtNetwork.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtWebKit.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtWebKit.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/include -Ibuild -F/usr/local/Cellar/qt/4.8.7/lib -x c++-header -c stable.h -o build/webkit_server.gch/c++
gcc -pipe -O2 -arch x86_64 -Xarch_x86_64 -mmacosx-version-min=10.5 -Wall -W -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/Cellar/qt/4.8.7/mkspecs/macx-g++ -I. -I/usr/local/Cellar/qt/4.8.7/lib/QtCore.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtCore.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtNetwork.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtNetwork.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtWebKit.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtWebKit.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/include -Ibuild -F/usr/local/Cellar/qt/4.8.7/lib -x objective-c++-header -c stable.h -o build/webkit_server.gch/objective-c++
In file included from /System/Library/Frameworks/CoreServices.framework/Headers/CoreServices.h:55,
from /System/Library/Frameworks/Foundation.framework/Headers/NSURLError.h:12,
from /System/Library/Frameworks/Foundation.framework/Headers/Foundation.h:80,
from /System/Library/Frameworks/Cocoa.framework/Headers/Cocoa.h:12,
from /usr/local/Cellar/qt/4.8.7/include/QtGui/qmacdefines_mac.h:113,
from /usr/local/Cellar/qt/4.8.7/include/QtGui/qwindowdefs.h:99,
from /usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers/qapplication.h:46,
from /usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers/QApplication:1,
from stable.h:1:
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:262: error: expected `}' before ‘__attribute__’
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:262: error: expected unqualified-id before ‘=’ token
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:414: error: expected `}' before ‘__attribute__’
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:414: error: expected unqualified-id before ‘=’ token
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:493: error: expected declaration before ‘}’ token
make[1]: *** [build/webkit_server.gch/objective-c++] Error 1
make: *** [sub-src-webkit_server-pro-make_default-ordered] Error 2
Command 'make' failed
make "DESTDIR="
cd src/ && /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Makefile.webkit_server
gcc -pipe -O2 -arch x86_64 -Xarch_x86_64 -mmacosx-version-min=10.5 -Wall -W -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/Cellar/qt/4.8.7/mkspecs/macx-g++ -I. -I/usr/local/Cellar/qt/4.8.7/lib/QtCore.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtCore.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtNetwork.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtNetwork.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtWebKit.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/lib/QtWebKit.framework/Versions/4/Headers -I/usr/local/Cellar/qt/4.8.7/include -Ibuild -F/usr/local/Cellar/qt/4.8.7/lib -x objective-c++-header -c stable.h -o build/webkit_server.gch/objective-c++
In file included from /System/Library/Frameworks/CoreServices.framework/Headers/CoreServices.h:55,
from /System/Library/Frameworks/Foundation.framework/Headers/NSURLError.h:12,
from /System/Library/Frameworks/Foundation.framework/Headers/Foundation.h:80,
from /System/Library/Frameworks/Cocoa.framework/Headers/Cocoa.h:12,
from /usr/local/Cellar/qt/4.8.7/include/QtGui/qmacdefines_mac.h:113,
from /usr/local/Cellar/qt/4.8.7/include/QtGui/qwindowdefs.h:99,
from /usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers/qapplication.h:46,
from /usr/local/Cellar/qt/4.8.7/lib/QtGui.framework/Versions/4/Headers/QApplication:1,
from stable.h:1:
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:262: error: expected `}' before ‘__attribute__’
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:262: error: expected unqualified-id before ‘=’ token
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:414: error: expected `}' before ‘__attribute__’
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:414: error: expected unqualified-id before ‘=’ token
/System/Library/Frameworks/CoreServices.framework/Frameworks/FSEvents.framework/Headers/FSEvents.h:493: error: expected declaration before ‘}’ token
make[1]: *** [build/webkit_server.gch/objective-c++] Error 1
make: *** [sub-src-webkit_server-pro-make_default-ordered] Error 2
Gem files will remain installed in /Users/boti/.rvm/gems/ruby-2.0.0-p353#myaidin/gems/capybara-webkit-1.3.1 for inspection.
Results logged to /Users/boti/.rvm/gems/ruby-2.0.0-p353#myaidin/gems/capybara-webkit-1.3.1/./gem_make.out
An error occurred while installing capybara-webkit (1.3.1), and Bundler cannot continue.
Make sure that `gem install capybara-webkit -v '1.3.1'` succeeds before bundling.
It looks like you're using gcc, which has trouble compiling some of Apple's newer frameworks.
If your CC or CXX environment variables are set, make sure they're set to cc and c++ and not something like gcc and g++.
Related
So i'm stuck again.
What I want to do: access a postgreSQL database via database link from Oracle (12.1 - yes, I know it's old ...).
Oracle is running on Centos 7.
Initially I did a
yum -y install postgresql-odbc
yum -y install unixODBC
and was able to access postgreSQL (running on another machine).
But it didn't work for UTF-8 data. Got a hint that this might be due to an old version of unixODBC so I decided to compile from source (as the centos package is rather old).
Compiling and installing unixODBC worked without a hassle:
wget http://www.unixodbc.org/unixODBC-2.3.11.tar.gz
tar xzf unixODBC-2.3.11.tar.gz
cd unixODBC-2.3.11/
./configure
make
make install
But compiling psqlODBC is where it's at:
yum install postgresql
yum install postgresql-devel
wget https://ftp.postgresql.org/pub/odbc/versions/src/psqlodbc-13.02.0000.tar.gz
cd psqlodbc-13.02.0000/
./configure
make
...
Make gives me the following output:
[root#tukanbox psqlodbc-13.02.0000]# make
make all-am
make[1]: Entering directory `/root/psqlodbc-13.02.0000'
/bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/include -I/usr/include/pgsql/internal -DUNICODE_SUPPORT -g -O2 -Wall -MT psqlodbcw_la-connection.lo -MD -MP -MF .deps/psqlodbcw_la-connection.Tpo -c -o psqlodbcw_la-connection.lo `test -f 'connection.c' || echo './'`connection.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I/usr/local/include -I/usr/include -I/usr/include/pgsql/internal -DUNICODE_SUPPORT -g -O2 -Wall -MT psqlodbcw_la-connection.lo -MD -MP -MF .deps/psqlodbcw_la-connection.Tpo -c connection.c -fPIC -DPIC -o .libs/psqlodbcw_la-connection.o
connection.c: In function 'handle_pgres_error':
connection.c:900:45: error: 'PG_DIAG_SCHEMA_NAME' undeclared (first use in this function)
errschemaname = PQresultErrorField(pgres, PG_DIAG_SCHEMA_NAME);
^
connection.c:900:45: note: each undeclared identifier is reported only once for each function it appears in
connection.c:901:44: error: 'PG_DIAG_TABLE_NAME' undeclared (first use in this function)
errtablename = PQresultErrorField(pgres, PG_DIAG_TABLE_NAME);
^
connection.c:902:45: error: 'PG_DIAG_COLUMN_NAME' undeclared (first use in this function)
errcolumnname = PQresultErrorField(pgres, PG_DIAG_COLUMN_NAME);
^
connection.c:903:47: error: 'PG_DIAG_DATATYPE_NAME' undeclared (first use in this function)
errdatatypename = PQresultErrorField(pgres, PG_DIAG_DATATYPE_NAME);
^
make[1]: *** [psqlodbcw_la-connection.lo] Fehler 1
make[1]: Leaving directory `/root/psqlodbc-13.02.0000'
make: *** [all] Fehler 2
Wondering where to declare these undeclared idenifiers. What does it want to know here? How to solve it?
No answer to the problem of not being able to compile - but an answer to the original problem that the original packages didn't work for UTF8:
https://www.postgresql.org/message-id/OFA166DBFD.19742AF7-ONC1257B6A.005692E6-C1257B6A.0056F890#lladro.net
This has to be done in the database as sysdba:
select fds_class_name from HS_FDS_CLASS;
select * from hs_class_caps where upper(CAP_DESCRIPTION) like '%NCHAR%' and FDS_CLASS_NAME ='ODBC12.1.0.1.0_0017';
exec DBMS_HS.ALTER_CLASS_CAPS('ODBC12.1.0.1.0_0017' , 564, 'ODBC12.1.0.1.0_0017', 564,131071, NULL, NULL);
I am trying to connect to a Postgres db trough MySQL Workbench.
Following the documentation we need to install a driver for psql in our machine.
I am running a MacOS Big Sur 11.2.3.
After run CFLAGS="-arch i386 -arch x86_64" make I'm getting the following error:
/Library/Developer/CommandLineTools/usr/bin/make all-am
source='info.c' object='info.lo' libtool=yes \
depfile='.deps/info.Plo' tmpdepfile='.deps/info.TPlo' \
depmode=gcc3 /bin/sh ./depcomp \
/bin/sh ./libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I. -g -O2 -c -o info.lo `test -f 'info.c' || echo './'`info.c
gcc -DHAVE_CONFIG_H -I. -I. -I. -g -O2 -c info.c -MT info.lo -MD -MP -MF .deps/info.TPlo -fno-common -DPIC -o info.lo
In file included from info.c:19:
./psqlodbc.h:41:10: fatal error: 'sql.h' file not found
#include <sql.h>
^~~~~~~
1 error generated.
make[1]: *** [info.lo] Error 1
make: *** [all] Error 2
It seems that the 'sql.h' file is not found.
How to solve this issue?
Runing the command in the instruction:
pip install -U spacy
It fails to build wheel for Building wheels for collected packages: spacy, murmurhash, cymem, preshed, thinc, ujson, regex, cytoolz
This is the error shown on the terminal.
Running setup.py bdist_wheel for spacy ... error
Complete output from command /usr/local/opt/python/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-install-9ygkdvbw/spacy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-wheel-swjw2gll --python-tag cp36:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.13-x86_64-3.6
creating build/lib.macosx-10.13-x86_64-3.6/spacy
copying spacy/lemmatizer.py -> build/lib.macosx-10.13-x86_64-3.6/spacy
copying spacy/compat.py -> build/lib.macosx-10.13-x86_64-3.6/spacy
...
...
copying spacy/tests/tokenizer/sun.txt -> build/lib.macosx-10.13-x86_64-3.6/spacy/tests/tokenizer
running build_ext
building 'spacy.parts_of_speech' extension
creating build/temp.macosx-10.13-x86_64-3.6
creating build/temp.macosx-10.13-x86_64-3.6/spacy
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes /usr/local/opt/openssl/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-install-9ygkdvbw/spacy/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c spacy/parts_of_speech.cpp -o build/temp.macosx-10.13-x86_64-3.6/spacy/parts_of_speech.o -O2 -Wno-strict-prototypes -Wno-unused-function
clang: warning: /usr/local/opt/openssl/include: 'linker' input unused [-Wunused-command-line-argument]
clang++ -bundle -undefined dynamic_lookup /usr/local/opt/openssl/lib /usr/local/opt/openssl/include build/temp.macosx-10.13-x86_64-3.6/spacy/parts_of_speech.o -L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib -o build/lib.macosx-10.13-x86_64-3.6/spacy/parts_of_speech.cpython-36m-darwin.so -Wl,-rpath,#loader_path/../spacy/platform/darwin/lib
ld: can't map file, errno=22 file '/usr/local/opt/openssl/include' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang++' failed with exit status 1
----------------------------------------
Failed building wheel for spacy
Running setup.py clean for spacy
Running setup.py bdist_wheel for murmurhash ... error
Complete output from command /usr/local/opt/python/bin/python3.6 -u -c "import setuptools, tokenize;__file__='/private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-install-9ygkdvbw/murmurhash/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-wheel-9ytvwkua --python-tag cp36:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.13-x86_64-3.6
creating build/lib.macosx-10.13-x86_64-3.6/murmurhash
copying murmurhash/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/murmurhash
copying murmurhash/about.py -> build/lib.macosx-10.13-x86_64-3.6/murmurhash
creating build/lib.macosx-10.13-x86_64-3.6/murmurhash/tests
copying murmurhash/tests/__init__.py -> build/lib.macosx-10.13-x86_64-3.6/murmurhash/tests
copying murmurhash/tests/test_import.py -> build/lib.macosx-10.13-x86_64-3.6/murmurhash/tests
copying murmurhash/mrmr.pyx -> build/lib.macosx-10.13-x86_64-3.6/murmurhash
copying murmurhash/__init__.pxd -> build/lib.macosx-10.13-x86_64-3.6/murmurhash
copying murmurhash/mrmr.pxd -> build/lib.macosx-10.13-x86_64-3.6/murmurhash
creating build/lib.macosx-10.13-x86_64-3.6/murmurhash/include
creating build/lib.macosx-10.13-x86_64-3.6/murmurhash/include/murmurhash
copying murmurhash/include/murmurhash/MurmurHash2.h -> build/lib.macosx-10.13-x86_64-3.6/murmurhash/include/murmurhash
copying murmurhash/include/murmurhash/MurmurHash3.h -> build/lib.macosx-10.13-x86_64-3.6/murmurhash/include/murmurhash
running build_ext
building 'murmurhash.mrmr' extension
creating build/temp.macosx-10.13-x86_64-3.6
creating build/temp.macosx-10.13-x86_64-3.6/murmurhash
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes /usr/local/opt/openssl/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-install-9ygkdvbw/murmurhash/murmurhash/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c murmurhash/mrmr.cpp -o build/temp.macosx-10.13-x86_64-3.6/murmurhash/mrmr.o -O3 -Wno-strict-prototypes -Wno-unused-function
clang: warning: /usr/local/opt/openssl/include: 'linker' input unused [-Wunused-command-line-argument]
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes /usr/local/opt/openssl/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-install-9ygkdvbw/murmurhash/murmurhash/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c murmurhash/MurmurHash2.cpp -o build/temp.macosx-10.13-x86_64-3.6/murmurhash/MurmurHash2.o -O3 -Wno-strict-prototypes -Wno-unused-function
clang: warning: /usr/local/opt/openssl/include: 'linker' input unused [-Wunused-command-line-argument]
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes /usr/local/opt/openssl/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -I/private/var/folders/9t/0qgpwgy906z_sww71dnkgkr80000gn/T/pip-install-9ygkdvbw/murmurhash/murmurhash/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/3.6.5/Frameworks/Python.framework/Versions/3.6/include/python3.6m -c murmurhash/MurmurHash3.cpp -o build/temp.macosx-10.13-x86_64-3.6/murmurhash/MurmurHash3.o -O3 -Wno-strict-prototypes -Wno-unused-function
clang: warning: /usr/local/opt/openssl/include: 'linker' input unused [-Wunused-command-line-argument]
clang++ -bundle -undefined dynamic_lookup /usr/local/opt/openssl/lib /usr/local/opt/openssl/include build/temp.macosx-10.13-x86_64-3.6/murmurhash/mrmr.o build/temp.macosx-10.13-x86_64-3.6/murmurhash/MurmurHash2.o build/temp.macosx-10.13-x86_64-3.6/murmurhash/MurmurHash3.o -L/usr/local/lib -L/usr/local/opt/openssl/lib -L/usr/local/opt/sqlite/lib -o build/lib.macosx-10.13-x86_64-3.6/murmurhash/mrmr.cpython-36m-darwin.so
ld: can't map file, errno=22 file '/usr/local/opt/openssl/lib' for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'clang++' failed with exit status 1
----------------------------------------
Failed building wheel for murmurhash
Running setup.py clean for murmurhash
Similar error for the rest of the libraries.
It probably has something to do with finding python header files. And I checked the location using this command :
python -c "import sysconfig; print(sysconfig.get_config_var('INCLUDEPY'))"
/usr/local/opt/python/Frameworks/Python.framework/Versions/3.6/include/python3.6m
It has all the header files.
This answer (Failed building wheel for spacy) suggests installing the wheel individually. How do I do that on Mac OS X?
The best way to download Spacy and work with it is to download it manually and link it. Below command is used to download it and link it to your python libraries:
Command to download it:
pip install https://github.com/explosion/spacy-models/releases/download/en_core_web_sm-2.2.0/en_core_web_sm-2.2.0.tar.gz
Link that will explain more: https://spacy.io/usage/models#usage-link
I got the following error when I tried to compile .cpp file with clang++.
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
I set up Python and boost-python as follows.
Python
I installed Python 3.6.0 using pyenv-virtualenv (via homebrew)
Boost-Python
I used homebrew in Python 3 environment.
$ source activate py36
$ brew install boost-python --with-python3 --without-python
~/.bash_profile
My ~/.bash_profile looks like this:
export PYENV_ROOT="/usr/local/var/pyenv"
export PYENV_VIRTUALENV_DISABLE_PROMPT=1
export CPLUS_INCLUDE_PATH="$CPLUS_INCLUDE_PATH:/usr/local/var/pyenv/versions/3.6.0/include/python3.6m/"
if which pyenv > /dev/null; then eval "$(pyenv init -)"; fi
if which pyenv-virtualenv-init > /dev/null; then eval "$(pyenv virtualenv-init -)" ; fi
Test cpp
This is the file I tried to compile and failed (saved as test.cpp).
#define BOOST_PYTHON_STATIC_LIB
#include <boost/python.hpp>
using namespace boost::python;
char const* say(){
return "hello, world";
}
BOOST_PYTHON_MODULE( hello ){
boost::python::def( "say", say );
}
makefile
CC = clang++
INCLUDE = -I`python -c 'from distutils.sysconfig import *; print(get_python_inc())’`
BOOST = -lboost_python3.6 -lboost_serialization
FMATH = -fomit-frame-pointer -fno-operator-names -msse2 -mfpmath=sse -march=native
CFLAGS = -std=c++11 -L/usr/local/lib -O3
CFLAGS_SO = -shared -fPIC -std=c++11 -L/usr/local/lib -O3
LINK = -L/usr/local/Cellar/boost-python/1.64.0/lib/
install:
$(CC) test.cpp -o hello.so $(INCLUDE) $(BOOST) $(LINK) $(FMATH) $(CFLAGS_SO)
Error
make install returns this error.
clang++ test.cpp -o hello.so -I`python -c 'from distutils.sysconfig import *; print(get_python_inc())’` -lboost_python3.6 -lboost_serialization -L/usr/local/Cellar/boost-python/1.64.0/lib/ -fomit-frame-pointer -fno-operator-names -msse2 -mfpmath=sse -march=native -shared -fPIC -std=c++11 -L/usr/local/lib -O3 -v
/bin/sh: command substitution: line 0: unexpected EOF while looking for matching `''
/bin/sh: command substitution: line 1: syntax error: unexpected end of file
Apple LLVM version 8.1.0 (clang-802.0.42)
Target: x86_64-apple-darwin16.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
clang -cc1 version 8.1.0 (clang-802.0.42) default target x86_64-apple-darwin16.6.0
ignoring nonexistent directory "-lboost_python3.6"
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
.
/usr/local/var/pyenv/versions/3.6.0/include/python3.6m
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1
/usr/local/include
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.1.0/include
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
"/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld" -demangle -lto_library /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/libLTO.dylib -dynamic -dylib -arch x86_64 -macosx_version_min 10.12.0 -o hello.so -L/usr/local/Cellar/boost-python/1.64.0/lib/ -L/usr/local/lib /var/folders/rm/qv81g4ss29j_gv1b366rl2080000gp/T/test-16790a.o -lboost_serialization -lc++ -lSystem /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/8.1.0/lib/darwin/libclang_rt.osx.a
Undefined symbols for architecture x86_64:
<LINES ARE OMITTED>
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [install] Error 1
I'm trying to install neovim with linuxbrew on AWS, but I keep getting the following messages, and I can't figure it out :/.
/home/ec2-user/.linuxbrew/bin/libtool: line 10548: /usr/bin/gcc-4.8: No such file or directory
~/dotfiles$ brew install neovim
==> Installing neovim from neovim/neovim
==> Downloading https://github.com/neovim/neovim/archive/v0.1.4.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim-0.1.4.tar.gz
==> Downloading https://github.com/libuv/libuv/archive/v1.8.0.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--libuv-1.8.0.tar.gz
==> Downloading https://github.com/msgpack/msgpack-c/archive/cpp-1.0.0.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--msgpack-1.0.0.tar.gz
==> Downloading https://raw.githubusercontent.com/neovim/deps/master/opt/LuaJIT-2.0.4.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--luajit-2.0.4.tar.gz
==> Downloading https://github.com/keplerproject/luarocks/archive/5d8a16526573b36d5b22aa74866120c998466697.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--luarocks-998466697.tar.gz
==> Downloading https://github.com/mauke/unibilium/archive/v1.2.0.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--unibilium-1.2.0.tar.gz
==> Downloading http://www.leonerd.org.uk/code/libtermkey/libtermkey-0.18.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--libtermkey-0.18.tar.gz
==> Downloading https://github.com/neovim/libvterm/archive/1b745d29d45623aa8d22a7b9288c7b0e331c7088.tar.gz
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--libvterm-7088.tar.gz
==> Downloading https://github.com/jemalloc/jemalloc/releases/download/4.0.2/jemalloc-4.0.2.tar.bz2
Already downloaded: /home/ec2-user/.cache/Homebrew/neovim--jemalloc-4.0.2.tar.bz2
==> Building third-party dependencies.
==> cmake ../third-party -DUSE_BUNDLED_BUSTED=OFF -DUSE_BUNDLED_LUV=OFF -DUSE_EXISTING_SRC_DIR=ON -DCMAKE_C_FLAGS_RELEASE=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG -DCMAKE_INSTALL_PREFIX=/home/ec2-user/
==> make VERBOSE=1
Last 15 lines from /home/ec2-user/.cache/Homebrew/Logs/neovim/02.make:
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -Wall -std=c99 -fPIC -c uninames.c -fPIC -DPIC -o .libs/uninames.o
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -Wall -std=c99 -fPIC -c uninames.c -o uninames.o >/dev/null 2>&1
libtool --mode=compile --tag=CC /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -DTERMINFO_DIRS='"/etc/terminfo:/lib/terminfo:/usr/share/terminfo:/usr/lib/terminfo:/usr/local/share/terminfo:/usr/local/lib/terminfo"' -Wall -std=c99 -fPIC -o uniutil.lo -c uniutil.c
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -DTERMINFO_DIRS=\"/etc/terminfo:/lib/terminfo:/usr/share/terminfo:/usr/lib/terminfo:/usr/local/share/terminfo:/usr/local/lib/terminfo\" -Wall -std=c99 -fPIC -c uniutil.c -fPIC -DPIC -o .libs/uniutil.o
libtool: compile: /home/ec2-user/.linuxbrew/bin/gcc-5 -I. -DTERMINFO_DIRS=\"/etc/terminfo:/lib/terminfo:/usr/share/terminfo:/usr/lib/terminfo:/usr/local/share/terminfo:/usr/local/lib/terminfo\" -Wall -std=c99 -fPIC -c uniutil.c -o uniutil.o >/dev/null 2>&1
libtool --mode=link --tag=CC /home/ec2-user/.linuxbrew/bin/gcc-5 -L/home/ec2-user/.linuxbrew/lib -Wl,--dynamic-linker=/home/ec2-user/.linuxbrew/lib/ld.so -Wl,-rpath,/home/ec2-user/.linuxbrew/lib -rpath '/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build/usr/lib' -version-info 3:0:3 -o libunibilium.la unibilium.lo uninames.lo uniutil.lo
libtool: link: /usr/bin/gcc-4.8 -shared -fPIC -DPIC .libs/unibilium.o .libs/uninames.o .libs/uniutil.o -L/home/ec2-user/.linuxbrew/lib -Wl,--dynamic-linker=/home/ec2-user/.linuxbrew/lib/ld.so -Wl,-rpath -Wl,/home/ec2-user/.linuxbrew/lib -Wl,-soname -Wl,libunibilium.so.0 -o .libs/libunibilium.so.0.3.0
/home/ec2-user/.linuxbrew/bin/libtool: line 10548: /usr/bin/gcc-4.8: No such file or directory
make[3]: *** [libunibilium.la] Error 127
make[3]: Leaving directory `/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build/build/src/unibilium'
make[2]: *** [build/src/unibilium-stamp/unibilium-build] Error 2
make[2]: Leaving directory `/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build'
make[1]: *** [CMakeFiles/unibilium.dir/all] Error 2
make[1]: Leaving directory `/tmp/neovim-20160518-12137-13p0ite/neovim-0.1.4/deps-build'
make: *** [all] Error 2
READ THIS: https://github.com/Linuxbrew/brew/blob/master/share/doc/homebrew/Troubleshooting.md#troubleshooting
If reporting this issue please do so at (not Homebrew/brew):
https://github.com/neovim/homebrew-neovim/issues
These open issues may also help:
Neovim Fails to Install on Standalone Linuxbrew: libmsgpack.so Error https://github.com/neovim/homebrew-neovim/issues/156
Neovim failing to build with homebrew on OS X 10.9.5 https://github.com/neovim/homebrew-neovim/issues/153
Can't install via homebrew-neovim if luarocks path is set explicitly https://github.com/neovim/homebrew-neovim/issues/149
Error when trying to install neovim in my Ubuntu 14.04 virtual machine. https://github.com/neovim/homebrew-neovim/issues/134
I had the same issue. It is a problem of the libtool formula
https://github.com/Linuxbrew/homebrew-core/issues/376
I fixed by doing
brew update
brew reinstall -s libtool
brew install neovim/neovim/neovim