All vs All comparisons on MongoDB - mongodb

We are planning to use MongoDB for a general purpose system and it seems well suited to the particular data and use cases we have.
However we have one use case where we will need to compare every document (of which there could be 10s of millions) with every other document. The 'distance measure' could be pre computed offline by another system but we are concerned about the online performance of MongoDB when we want to query - eg when we want to see the top 10 closest documents in the entire collection to a list of specific documents ...
Is this likely to be slow? Also can this be done across documents (eg query for the top10 closest documents in one collection to a document in another collection)...
Thanks in advance,
FK

Related

How to efficiently query MongoDB for documents when I know that 95% are not used

I have a collection of ~500M documents.
Every time when I execute a query, I receive one or more documents from this collection. Let's say I have a counter for each document, and I increase this counter by 1 whenever this document is returned from the query. After a few months of running the system in production, I discover that the counter of only 5% of the documents is greater than 0 (zero). Meaning, 95% of the documents are not used.
My question is: Is there an efficient way to arrange these documents to speedup the query execution time, based on the fact that 95% of the documents are not used?
What is the best practice in this case?
If - for example - I will add another boolean field for each document named "consumed" and index this field. Can I improve the query execution time somehow?
~500M documents That is quite a solid figure, good job if that's true. So here is how I see the solution of the problem:
If you want to re-write/re-factor and rebuild the DB of an app. You could use versioning pattern.
How does it looks like?
Imagine you have a two collections (or even two databases, if you are using micro service architecture)
Relevant docs / Irrelevant docs.
Basically you could use find only on relevant docs collection (which store 5% of your useful docs) and if there is nothing, then use Irrelevant.find(). This pattern will allows you to store old/historical data. And manage it via TTL index or capped collection.
You could also add some Redis magic to it. (Which uses precisely the same logic), take a look:
This article can also be helpful (as many others, like this SO question)
But don't try to replace Mongo with Redis, team them up instead.
Using Indexes and .explain()
If - for example - I will add another boolean field for each document named "consumed" and index this field. Can I improve the query execution time somehow?
Yes, it will deal with your problem. To take a look, download MongoDB Compass, create this boolean field in your schema, (don't forget to add default value), index the field and then use Explain module with some query. But don't forget about compound indexes! If you create field on one index, measure the performance by queering only this one field.
The result should been looks like this:
If your index have usage (and actually speed-up) Compass will shows you it.
To measure the performance of the queries (with and without indexing), use Explain tab.
Actually, all this part can be done without Compass itself, via .explain and .index queries. But Compass got better visuals of this process, so it's better to use it. Especially since he becomes absolutely free for all.

Query and sort on nultiple collections based on time

Our application is planning to use MongoDB for reports.
Our reports are time-based (where the raw data is different events).
We were thinking of creating a separate collection for each day, so we will not need to query a whole large collection when we need to query,aggregate and sort events for a specific day only.
One question is whether this design makes sense.
Another question is what will happen if we need to aggregate and sort event over more than one collection - for one week for example.
Does MongoDB supports this? If it does - how should it be done so it will be efficient n terms of performance?
We were thinking of creating a separate collection for each day, so we will not need to query a whole large collection when we need to query,aggregate and sort events for a specific day only.
One question is whether this design makes sense.
While using proper indexes, mongoDB should not have problems with a very big collection.
You could read more here: MongoDB indexes
Another question is what will happen if we need to aggregate and sort event over more than one collection - for one week for example.
Does MongoDB supports this? If it does - how should it be done so it will be efficient n terms of performance?
If you want to go your way, you could use aggregation pipelines and $facet to run multiple queries at once. However this could become a little tricky because you have to generate the collection names from your query parameters. Infact, i think this could be slower and more prone to errors. So i don't recomend this approach.

Mongo DB update query performance

I would like to understand which of the below queries would be faster, while doing updates, in mongo db? I want to update few thousands of records at one stretch.
Accumulating the object ids of those records and firing them using $in or using bulk update?
Using one or two fields in the collection which are common for those few thousand records - akin to "where" in sql and firing an update using those fields. These fields might or might not be indexed.
I know that query will be much smaller in the 2nd case as every single "_id" (oid) is not accumulated. Does accumulating _ids and using those to update documents offer any practical performance advantages?
Does accumulating _ids and using those to update documents offer any practical performance advantages?
Yes because MongoDB will certainly use the _id index (idhack).
In the second method - as you observed - you can't tell whether or not an index will be used for a certain field.
So the answer will be: it depends.
If your collection has million of documents or more, and / or the number of search fields is quite large you should prefer the first search method. Especially if the id list size is not small and / or the id values are adjacent.
If your collection is pretty small and you can tolerate a full scan you may prefer the second approach.
In any case, you should testify both methods using explain().

How to do global search in MongoDB?

What I mean as global search is searching for documents in specified collections, for example, searching for a name in both User and Organization collections and will return both user and organization documents that match the criteria.
Is it possible to simply copy the documents in User and Organization into another collection and do a search in it?
No, it is not possible to do a multi-collection search automatically. There's no reason however that you couldn't perform the same query on multiple collections and combine the results.
While you could duplicate the data into another collection for query purposes, if you need to be guaranteed that the source collection's values matches identically with the "index" collection, you'll need to implement your own multi-phase transaction (example) as MongoDb doesn't have a multi-collection atomic commit. Or, you can accept the fact that the "index" table may be out of sync. Of course, it could be periodically updated through custom code. Further, it means your working set has increased as you're double storing data. Also, if you then need to grab data from individual collections (to grab more of the source document), you've likely not gained anything and made things worse when compared to doing multiple queries in the first place.
You could store related documents in the same collection and take advantage of the built-in indexing offered. Of course, this comes with the caveat that if your documents are now typed, you may find it more challenging to build MongoDb indexes that are efficient. Every changing/new document must go through the indexing pipeline, which may introduce significant overhead.
If it's only a few collections, I'd just do multiple searches without understanding more deeply your requirements. If not, the second best would be to combine documents into a single collection. Last choice would be to copy the data.

mongodb document structure

My database has users collection,
each user has multiple documents,
each document has multiple sections
each section has multiple works
Users work with works collection very often (add new work, update works, delete works). So my question is what structure of collections should I make? works collection is 100-200 records per section.
Should I make work collection for all users with user _id or there is best solution?
Depends on what kind of queries you have. The guideline is to arrange documents so that you can fetch all you need in ideally one query.
On the other hand, what you probably want to avoid is to have mongo reallocate documents because there's not enough space for a in-place update. You can do that by preallocating enough space, or extracting that frequently changing part into its own collection.
As you can read in MongoDB docs,
Generally, for "contains" relationships between entities, embedding should be be chosen. Use linking when not using linking would result in duplication of data.
So if each user has only access to his documents, I think you're good. Just keep in mind there's a limitation on size (16MB I think) for documents which you should be careful about, since you're embedding lots of stuff.