Why am I getting this NoClassDefFoundError from my code? - noclassdeffounderror

I have been trying to use a Jar file as a library in my code, and it compiles fine. However, at runtime, I keep getting the NoClassDefFoundError message. Why is this happening? I have included the Jar file in the compile path and the runtime path too.
Here is the error message:
Exception in thread "main" java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory
at org.apache.pdfbox.cos.COSDocument.(COSDocument.java:51)
at org.apache.pdfbox.pdmodel.PDDocument.(PDDocument.java:136)
at processing.PDFToJPG.main(PDFToJPG.java:58)
Caused by: java.lang.ClassNotFoundException: org.apache.commons.logging.LogFactory
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 3 more
Here is my code:
import org.apache.pdfbox.pdmodel.PDDocument;
import org.apache.pdfbox.pdmodel.PDPage;
public static void main(String[] args) {
try {
PDDocument doc = new PDDocument();
} catch (Exception e) {
e.printStackTrace();
}
}
I am using NetBeans IDE as well as Windows 10
This is my setting for compile classpath:
[
This is my setting for runtime classpath:
[
EDIT: Thank you for your help, it really worked. All i needed to do was to download the dependencies Jar file, not editing the classpath like what i have been trying to do

I think you need another jars besides the one you have already included. Try to add common-logging 1.4. Apparently, there is a dependency between pdfbox1.8.jar and this jar as stated on their site.
EDIT: There are more dependencies fontbox and jempbox to take in account as well.
EDIT2: I made a zip with all dependencies needed you can download it here.

I agree with Aurelien's post: it looks like you are missing Apache Commons Logging - and other runtime dependencies.
You might want to consider creating your project as a 'Maven' Project (And Netbeans supports Maven pretty well): and then adding 'pdfbox' as a 'dependency'; this should make life a lot easier for you - since Maven will fetch any other required dependencies.
You can get the 'Maven Coordinates' for the various PDFBox versions from here:
http://mvnrepository.com/artifact/org.apache.pdfbox/pdfbox
If you want to build your final project into a single JAR containing all the deps; or to create a separate 'lib' directory of them: you will have to make some minor changes to the Maven project file ('pom.xml') to do this.
This Stackoverflow Post has an example of doing that.

Related

How to address Scala error in eclipse 2019?

I am trying to do a basic scala HelloWorld in Eclipse 2019 and I am getting an error.
The following is my code and the error it is producing. Can someone please help me address this error in eclipse? Thanks
package hello
object HelloWorld {
def main(args: Array[String]): Unit = {
println("Hello, world!")
}
}
Error:
Exception in thread "main" java.lang.NoClassDefFoundError:
scala/Predef$
at HelloWorld/hello.HelloWorld$.main(HelloWorld.scala:5)
at HelloWorld/hello.HelloWorld.main(HelloWorld.scala)
Caused by: java.lang.ClassNotFoundException: scala.Predef$
at
java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:583)
at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:178)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:521)
... 2 more
Scala library is already in source path
There are two required places to set your class-path:
Build/compilation time class-path: (i) Right-click on your project, (ii) Buildpath > Configure BuildPath, (iii) Add Library (or jar), (iv) Select the Scala Library. This one you already have as supported by your screenshot.
Run-time compilation class-path: This needs to be explicitly set in the Run-time configuration to also include the scala library: (i) Run configurations..., (ii) Classpath, (iii) Add Jar and use the scala-library jar. For this option, I have not tested whether User vs Bootstrap matters. Furthermore, I was unable to use the Add Library here, only Add jar results in a functioning run within Eclipse.
The second option is the likely cause of the error you are getting.
You need to add Scala library to your classpath.
From Eclipse:
Right-click on your project
Configure Buildpath
Add Library
Select the Scala Library

`NoClassDefFoundError` in Artifact built with IntelliJ

I use Intellij Idea 2017.3 (Ultimate Edition) to build an artifact (an executable Jar) from a Scala/SBT project; Scala version is 2.12.
Since I have added a dependency to Scallop recently, I can no longer execute the Jar file because the Scallop class ScallopConf is not in the Jar file:
$ java -jar executable.jar
Error: A JNI error has occurred, please check your installation and try again
Exception in thread "main" java.lang.NoClassDefFoundError: org/rogach/scallop/ScallopConf
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
[...]
Caused by: java.lang.ClassNotFoundException: org.rogach.scallop.ScallopConf
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 19 more
I can confirm that the ScallopConf class is not packaged into the Jar file by inspecting it manually. All other dependencies are there, no matter if they were added initially or later.
This is how I added the dependency to the build.sbt file in the project root directory:
libraryDependencies += "org.rogach" %% "scallop" % "3.1.1"
The project compiles fine both within the IDE and with sbt compile. I can also run it fine within the IDE.
I created the artifact within the IDE in a standard way. Is there anything particular I need to pay attention to, possibly related to Scallop?
As pointed out by #Andrey , the artifact settings are not automatically updated when the SBT dependencies change. To make sure everything is up-to-date, the workaround is hence to re-create the artifact after updating the SBT dependencies.
So this issue is not related to the specific dependency (Scallop in this case).
Conflicts are happening between class files of jars, therefore in the above example when libraries are removed from File | Project Structure | Artifacts | Output Layout . Everything runs fine.
In my case I had dependencies on other jars as well, so when I did this activity of removing all other libraries. ClassNotFoundException was gone but NoClassFoundEx is coming for dependent libraries which I removed.
In order to get to the exact solution I am forced to evaluate all the jar files one by one and removed unwanted libraries to get to the exact solution.

ClassNotFoundException for Spark job on Yarn-cluster mode

So I am trying to run a Spark job on Yarn-cluster mode kicked off via Oozie workflow, but have been encountering the following error (relevant stacktrace below)
java.sql.SQLException: ERROR 103 (08004): Unable to establish connection.
at org.apache.phoenix.exception.SQLExceptionCode$Factory$1.newException(SQLExceptionCode.java:388)
at org.apache.phoenix.exception.SQLExceptionInfo.buildException(SQLExceptionInfo.java:145)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.openConnection(ConnectionQueryServicesImpl.java:296)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.access$300(ConnectionQueryServicesImpl.java:179)
at org.apache.phoenix.query.ConnectionQueryServicesImpl$12.call(ConnectionQueryServicesImpl.java:1917)
at org.apache.phoenix.query.ConnectionQueryServicesImpl$12.call(ConnectionQueryServicesImpl.java:1896)
at org.apache.phoenix.util.PhoenixContextExecutor.call(PhoenixContextExecutor.java:77)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.init(ConnectionQueryServicesImpl.java:1896)
at org.apache.phoenix.jdbc.PhoenixDriver.getConnectionQueryServices(PhoenixDriver.java:180)
at org.apache.phoenix.jdbc.PhoenixEmbeddedDriver.connect(PhoenixEmbeddedDriver.java:132)
at org.apache.phoenix.jdbc.PhoenixDriver.connect(PhoenixDriver.java:151)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
...
Caused by: java.io.IOException: java.lang.reflect.InvocationTargetException
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:240)
at org.apache.hadoop.hbase.client.ConnectionManager.createConnection(ConnectionManager.java:414)
at org.apache.hadoop.hbase.client.ConnectionManager.createConnectionInternal(ConnectionManager.java:323)
at org.apache.hadoop.hbase.client.HConnectionManager.createConnection(HConnectionManager.java:144)
at org.apache.phoenix.query.HConnectionFactory$HConnectionFactoryImpl.createConnection(HConnectionFactory.java:47)
at org.apache.phoenix.query.ConnectionQueryServicesImpl.openConnection(ConnectionQueryServicesImpl.java:294)
... 28 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
at org.apache.hadoop.hbase.client.ConnectionFactory.createConnection(ConnectionFactory.java:238)
... 33 more
Caused by: java.lang.UnsupportedOperationException: Unable to find org.apache.hadoop.hbase.ipc.controller.ClientRpcControllerFactory
at org.apache.hadoop.hbase.util.ReflectionUtils.instantiateWithCustomCtor(ReflectionUtils.java:36)
at org.apache.hadoop.hbase.ipc.RpcControllerFactory.instantiate(RpcControllerFactory.java:58)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.createAsyncProcess(ConnectionManager.java:2317)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.<init>(ConnectionManager.java:688)
at org.apache.hadoop.hbase.client.ConnectionManager$HConnectionImplementation.<init>(ConnectionManager.java:630)
... 38 more
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hbase.ipc.controller.ClientRpcControllerFactory
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
at org.apache.hadoop.hbase.util.ReflectionUtils.instantiateWithCustomCtor(ReflectionUtils.java:32)
... 42 more
Some background information:
The job runs on spark 1.4.1 (specified correct spark.yarn.jar field in the spark.conf file).
oozie.libpath is set to the hdfs directory in which the jar of my program resides.
org.apache.hadoop.hbase.ipc.controller.ClientRpcControllerFactory, the class not found, exists in phoenix-4.5.1-HBase-1.0-client.jar. I've specified this jar in spark.driver.extraClassPath and spark.executor.extraClassPath in my spark.conf file. I've also added the phoenix-core dependency in my pom file, so that the class exists in my shaded project jar as well.
Observations so far:
adding an extra field in my spark.conf file spark.driver.userClassPathFirst and setting it to true gets rid of the classnotfound exception. However, it also prevents me from initializing a spark context (null pointer exception). From googling around it seems that including this field messes up classpaths, so may not be the way to go about it since I cannot even initialize a spark context this way.
I noticed that in the oozie stdout log, I do not see the classpath of the phoenix jar. So maybe for some reason spark.driver.extraClassPath and spark.executor.extraClassPath aren't actually picking up the jar as an extraClassPath? I do know that I'm specifying the correct jar file path, as other jobs have spark.conf files with the same parameters.
I found a hacky way to make the phoenix jar show up in the classpath (in the oozie stdout log) by copying the jar to the same directory as where my program jar resides. This works whether or not spark.executor.extraClassPath is changed to point to the new jar location. However, the classnotfound exception persists, even though I clearly see the ClientRpcControllerFactory jar when I unzip the jar)
Other things I've tried:
I tried using the sparkConf.setJars() and sparkContext.addJar() methods, but still encountered the same error
added the jar in the spark.driver.extraClassPath field in my job properties file, but it hasn't seemed to help (Spark docs indicated that this field is necessary when running in client mode, so may not be relevant for my case)
Any help/ideas/suggestions would be greatly appreciated.
I use CDH 5.5.1 + Phoenix 4.5.2 (both installed with parcels) and faced the same problem. I think the problem disappeared after I switched to client mode. I can't verify this because I am getting other error with cluster mode now.
I tried to trace Phoenix source code and found some interesting things. Hope Java / Scala expert identify the root cause.
The PhoenixDriver class was loaded.
This showed the jar was found initially. After layers of Class Loader /
context switch (?), the jar lost from the classpath.
If I Class.forName() a non-existing class in my program, there is no need to call sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331). The stack is like:
java.lang.ClassNotFoundException: NONEXISTINGCLASS
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:264)
I copied Phoenix code into my program for testing. I still get the ClassNotFoundExcpetion if I call ConnectionQueryServicesImpl.init (ConnectionQueryServicesImpl.java:1896). However, a call to ConnectionQueryServicesImpl.openConnection (ConnectionQueryServicesImpl.java:296) returned usable HBase connection. So it seems PhoenixContextExecutor was causing the loss of the jar, but I don't know how.
Source code of Cloudera Phoenix 4.5.2 : https://github.com/cloudera-labs/phoenix/blob/phoenix1-4.5.2_1.2.0/phoenix-core/src/main/java/org/apache/
(Not sure whether I should post a comment... but I have no reputation anyway)
So I managed to fix my issue and get my job to run. My solution is very hacky, but will post it here in case it may help others in the future.
Basically, the problem as I understand it was that the org.apache.hadoop.hbase.util.ReflectionUtils class, which is responsible for finding the ClientRpcControllerFactory class, was being loaded from some cloudera directory in the cluster instead of from my own jar. When I set spark.driver.userClassPathFirst to true, it prioritized loading the ReflectionUtils class from my jar, and so was able to location the ClientRpcControllerFactory class. But that messed up some other classpaths and kept giving me a NullPointerException when I tried to initialize a SparkContext, so I looked for another solution.
I tried to figure out if it was possible to exclude all default cdh jars from being included in my classpath, but found that the value in spark.yarn.jar was pulling in all these cdh jars, and I definitely needed to specify that jar.
So the solution was to include all classes under org.apache.hadoop.hbase from the Phoenix jar into spark-assembly jar (the jar that spark.yarn.jar pointed to), which got rid of the original exception and did not give me a NPE when trying to initialize a SparkContext. I found that now the ReflectionUtils class was being loaded from the spark-assembly jar, and since the ClientRpcControllerFactorywas also included in that jar, it was able to find it. After this, I encountered a few more classNotFoundExceptions for Phoenix classes, so I put those classes into the spark-assembly jar as well.
Finally, I had a java.lang.RuntimeException: hbase-default.xml File Seems to be for and old Version of HBase problem. I found that my application jar contained such a file, but changing hbase.defaults.for.version.skip to true didn't do anything. So I included another hbase-default.xml file in the spark-assembly jar with the skip flag to true, and it finally worked.
Some observations:
I noticed that my spark-assembly jar was completely missing an org.apache.hadoop.hbase directory. A coworker told me that usually I should expect to find an hbase directory in my spark-assembly jar, so maybe I was working with a bad spark-assembly jar. Edit: I checked a spark-assembly jar that I newly downloaded (v1.5.2) and it doesn't have it, so maybe the apache.hadoop.hbase package is not included in it.
ClassNotFoundExceptions and classloader problems are hard to debug.

Running tests in IntelliJ ClassNotFoundException

I tried many different run configs, but whatever I do I get this exception when running specs2 tests in IntelliJ for scala.
It always fails to find a class that ends with a $ sign. I checked - and there really is no such class file. There's AppControllerIT.class and lots of classes like AppControllerIT$innerFunctionOrclass.clas, but not AppControllerIT$.class
Any ideas?
Thanks!
com.haha.market.api.e2e.controllers.AppControllerIT$
java.lang.ClassNotFoundException: com.haha.market.api.e2e.controllers.AppControllerIT$
STACKTRACE
java.net.URLClassLoader.findClass(URLClassLoader.java:381)
java.lang.ClassLoader.loadClass(ClassLoader.java:424)
sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
java.lang.ClassLoader.loadClass(ClassLoader.java:357)
org.specs2.reflect.Classes$$anonfun$loadClassEither$1.apply(Classes.scala:140)
org.specs2.reflect.Classes$$anonfun$loadClassEither$1.apply(Classes.scala:140)
org.specs2.control.ActionT$$anonfun$safe$1.apply(ActionT.scala:89)
org.specs2.control.ActionT$$anonfun$reader$1$$anonfun$apply$6.apply(ActionT.scala:80)
org.specs2.control.Status$.safe(Status.scala:100)
Classes with $ signs at the end are generate from compiled Scala objects. This means you may have an object defined similar to this:
package com.haha.market.api.e2e.controllers
object AppControllerIT {
}
From your error, it seems that an older compiled artifact or a library (?) is polluting your classpath. First, try cleaning up the project (mvn clean or sbt clean). Next, try to clean any libraries you have in your project inside IntelliJ. IntelliJ sometimes caches multiple versions of the same libraries which may cause confusion during runtime. To clean those up go to "File -> Project Structure" in IntelliJ and manually delete any duplicated libraries you may have.

Problem creating an executable jar from scala file

I'm tryign to export my project as a jar with IntelliJ 9.0. My project compiles and runs with no problem in Intellij, but when I write it to a .jar and open it, it will show an error.
My Main class is something like:
package Main
//Imports
object Main{
def main(args: Array[String]) {
println("Main: Hello, world!")
//do stuff
}
Now, in the artifacts window I created a .jar with the following:
Main Clas: Main.Main
Class Path: lib/javacsv lib/scala-compiler.jar lib/scala-library.jar lib/scalatest-1.0-test.jar lib/scalatest-1.0.jar lib/tools.jar lib/jtds-1.2.2.jar lib/flex-messaging-common.jar lib/flex-messaging-core.jar lib/spring.jar lib/mysql-connector-java-5.1.7-bin.jar lib/ojdbc14.jar lib/commons-logging.jar lib/postgresql-8.4-701.jdbc3.jar lib/log4j-1.2.15.jar lib/poi-3.6-20091214.jar lib/poi-ooxml-3.6-20091214.jar lib/dom4j-1.6.1.jar lib/poi-ooxml-schemas-3.6-20091214.jar lib/geronimo-stax-api_1.0_spec-1.0.jar lib/xmlbeans-2.3.0.jar lib/rt.jar lib/ifxjdbc.jar lib/db2jcc4.jar
I have double checked that all those classes are on the project and are the onnly classes on it. Notice that it inlcudes lib/scala-compiler.jar and lib/scala-library.jar.
Build the project: java -jar myScalaApp.jar and I get:
Exception in thread "main" java.lang.NoClassDefFoundError: scala/ScalaObject
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:675)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:124)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:260)
at java.net.URLClassLoader.access$000(URLClassLoader.java:56)
at java.net.URLClassLoader$1.run(URLClassLoader.java:195)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
at java.lang.ClassLoader.loadClass(ClassLoader.java:316)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:288)
at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:374)
at Main.Main.main(Main.scala)
Caused by: java.lang.ClassNotFoundException: scala.ScalaObject
at java.net.URLClassLoader$1.run(URLClassLoader.java:200)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:188)
at java.lang.ClassLoader.loadClass(ClassLoader.java:316)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:288)
at java.lang.ClassLoader.loadClass(ClassLoader.java:251)
at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:374)
... 13 more
I understand that it's not finding the scala classes but I made sure they are there. What else can be the problem and how could I fix it?
I'd say one of two things has gone wrong:
scala-library.jar is not in your jar; or
the class path at runtime doesn't include scala-library.jar.
I don't know how IntelliJ builds your jar: Does it unpack all your library jars and mung them together with your code into one big jar, or does it add the library jars as-is to your big jar and manipulate the classpath to get at the jars-within-jar?
The first point is easy enough to check: Either use jar -tvf yourJar.jar to list out the contents of your jar, or use an archive viewer to look into it graphically. Note that a .jar is basically a .zip, so you can rename the extension and then use a tool that can look into .zip files.
Just had an idea about the second part: Can you build a simple Java main class that prints out System.getProperty("java.class.path") ? A Java class should be able to run in that jar even if a Scala class isn't.
There are at least three ways to do this. (One applies to Netbeans but should work in Idea too)
Use jarjar as explained here
Use the idea on this page (not so elegant but the easiest) - essentially unpack the Scala directory from scala-library.jar and add this directory to your jar.
Use the idea on this page (for NB) - essentially add "scala-library.jar" to your project libraries.